Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14269
- Subject:
- XR_001785556.1
- Aligned Length:
- 2436
- Identities:
- 1074
- Gaps:
- 1184
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GACGGAAGAGCGAGCACGGGGTGACGTAGCTCAGTTGCAACGTGCTTTAAGTCTGGGTCTGCACTCCGGTCCCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGTACGGTGTGACACTGACCGCTGTGTTCCGTGTAGTCGAACCTTCTGTGCTTTCGGGAGCGGGACGCGGAGGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGGGTCCCGTGGGAACTGCTCGGGGCGCGGAGGGAAGAGCGACAGGAGCGCATGACGGCAGGACTGCGCGGCTG 222
Query 1 ------------------------------------------------------------------------AT 2
||
Sbjct 223 AAAAAGGCTGCTCTCGGGGACTGTGAGCCGGGACGTAGCCCGGCATCCCGTGGAACCCTGTCCGGTCTCGCCAT 296
Query 3 GCTGGGGGTCCGCTGCCTGCTGCGGTCCG-TGCGCTTCTGTTCCTCCGCCCCCTTCCCCAAGCACAAACCTTCA 75
|||.||||.|||..||||||| |||..|| |||||.||||||||||||...|||.|||||.||.|....|.||.
Sbjct 297 GCTCGGGGCCCGGCGCCTGCT-CGGCGCGCTGCGCCTCTGTTCCTCCGTTTCCTGCCCCAGGCCCCGCGCGTCT 369
Query 76 GCCAAACTGAGCGTGCGGGACGCTCTCGGGGCTCAGAACGCGAGTGGGGAGCGCATTAAGATCCAGGGATGGAT 149
||||||.||.|||||||||||||.|||.|||..|||.|||||||.||||||.||.|.|.|.|.|||||||||||
Sbjct 370 GCCAAAATGCGCGTGCGGGACGCCCTCAGGGTCCAGGACGCGAGAGGGGAGTGCGTAACGGTGCAGGGATGGAT 443
Query 150 TCGTTCTGTCCGATCCCAGAAGGAAGTCTTGTTCCTGCATGTAAATGATGGGTCATCTTTGGAAAGCCTTCAGG 223
.||.||.|||.||||||||||||||||.||||||||||||||||||||.||.||.||||||||||||||||||.
Sbjct 444 CCGGTCCGTCAGATCCCAGAAGGAAGTTTTGTTCCTGCATGTAAATGACGGATCTTCTTTGGAAAGCCTTCAGA 517
Query 224 TTGTTGCAGATTCAGGCCTTGACAGTAGAGAATTAACTTTTGGGAGTTCTGTGGAAGTACAAGGGCAGCTGATA 297
|||||||.||||||.||.|.||||||||||||||.||||||||||||||||||.||||.||||||||||||.|.
Sbjct 518 TTGTTGCGGATTCAAGCTTCGACAGTAGAGAATTGACTTTTGGGAGTTCTGTGCAAGTCCAAGGGCAGCTGGTC 591
Query 298 AAAAGTCCATCCAAAAGGCAAAATGTGGAACTGAAGGCAGAAAAAATTAAAGTTATTGGAAATTGTGATGCCAA 371
|||||||..|||||.|||||||||||||||||||||||||||||.|||.|.|||||||||.|.|||||.|||||
Sbjct 592 AAAAGTCAGTCCAAGAGGCAAAATGTGGAACTGAAGGCAGAAAAGATTGAGGTTATTGGAGACTGTGAAGCCAA 665
Query 372 GGATTTCCCCATCAAATATAAAGAGAGGCATCCTCTGGAGTACCTGCGACAATATCCTCACTTTAGGTGTAGGA 445
||..|||||.||.||.|||||.|||.|.||.|||||||||||||||.||||.|||||||||.|.|||||.||||
Sbjct 666 GGCATTCCCTATAAAGTATAAGGAGCGACACCCTCTGGAGTACCTGAGACAGTATCCTCACCTGAGGTGCAGGA 739
Query 446 CTAACGTTCTGGGTTCTATATTGAGGATTCGCAGTGAAGCGACAGCTGCTATTCATTCTTTCTTTAAGGACAGT 519
||||.|.|||||||||||||||||||.|.|||||||||||.|||||||||||||||||.|.|||||||||||.|
Sbjct 740 CTAATGCTCTGGGTTCTATATTGAGGGTCCGCAGTGAAGCCACAGCTGCTATTCATTCCTACTTTAAGGACAAT 813
Query 520 GGCTTTGTACATATTCATACTCCAATAATCACATCCAATGACTCTGAGGGAGCTGGAGAACTTTTTCAACTTGA 593
||||||||.||.||||||||.|||.||.||||||||||.||||.||||||.||.|||||.|||||||||.|.||
Sbjct 814 GGCTTTGTGCACATTCATACCCCAGTACTCACATCCAACGACTGTGAGGGGGCCGGAGAGCTTTTTCAAGTGGA 887
Query 594 ACCTTCAGGCAAACTTAAGGTACCTGAGGAGAATTTCTTCAATGTTCCTGCTTTCTTAACTGTCTCAGGACAAC 667
.||||||.|||||.|.||||.|||..||||||.||||||..|||||||||||||||||||||||||||||||||
Sbjct 888 GCCTTCAAGCAAAATAAAGGGACCCAAGGAGAGTTTCTTTGATGTTCCTGCTTTCTTAACTGTCTCAGGACAAC 961
Query 668 TTCATCTAGAAGTGATGTCAGGAGCTTTTACTCAAGTGTTTACCTTTGGTCCGACCTTCCGAGCTGAAAATTCT 741
||||.||||||||||||||||||||||||||.|||||.||||||||||||||.||.|||||||||||.||||||
Sbjct 962 TTCACCTAGAAGTGATGTCAGGAGCTTTTACCCAAGTATTTACCTTTGGTCCAACATTCCGAGCTGAGAATTCT 1035
Query 742 CAGAGCCGGAGGCACCTGGCAGAGTTTTATATGATAGAAGCAGAGATTTCTTTTGTTGACAGCCTTCAAGATCT 815
|||||||||||.||||||||.||.|||||||||.|.|||||.|||||||||||||||||.||||||||.|||||
Sbjct 1036 CAGAGCCGGAGACACCTGGCTGAATTTTATATGGTTGAAGCGGAGATTTCTTTTGTTGAAAGCCTTCAGGATCT 1109
Query 816 TATGCAGGTTATAGAGGAACTGTTCAAGGCTACAACAATGATGGTTCTCTCAAAATGTCCTGAAGATGTTGAAC 889
.||||||||.||.||||||||.||||||||.||.||...|||||||||||||.|.||||||||||||||||||.
Sbjct 1110 CATGCAGGTCATGGAGGAACTCTTCAAGGCGACCACGGAGATGGTTCTCTCACACTGTCCTGAAGATGTTGAAT 1183
Query 890 TCTGTCACAAATTCATAGCACCTGGCCAAAAGGACAGATTAGAACATATGCTAAAAAACAACTTTTTAATCATT 963
|.||||||.|.||||||||..|||||||.||| ||||
Sbjct 1184 TGTGTCACCAGTTCATAGCTGCTGGCCAGAAG--------------------------------------CATT 1219
Query 964 TCTTATACTGAAGCAGTGGAGATCTTAAAGCAAGCATCCCAGAACTTCACCTTTACCCCAGAGTGGGGTGCTGA 1037
||||||||.||.|||.|.||||||||||||||||||||||||||||||.|||||||.||
Sbjct 1220 TCTTATACGGAGGCAATTGAGATCTTAAAGCAAGCATCCCAGAACTTCGCCTTTACACC--------------- 1278
Query 1038 CCTACGGACTGAACATGAAAAGTACCTGGTGAAGCACTGTGGCAACATACCTGTCTTCGTTATTAATTATCCAT 1111
Sbjct 1279 -------------------------------------------------------------------------- 1278
Query 1112 TAACACTCAAGCCTTTCTACATGAGGGATAATGAAGATGGCCCTCAGCACACGGTTGCTGCTGTTGATCTTCTG 1185
||.||||||||||||.|||||||||
Sbjct 1279 -------------------------------------------------CAAGGTTGCTGCTGTAGATCTTCTG 1303
Query 1186 GTTCCTGGAGTTGGGGAACTCTTTGGAGGAGGCCTCAGAGAAGAACGATACCATTTCTTAGAGGAGCGCTTAGC 1259
|||||||||||||||||.|||||||||||..|||||||.||.|||||.|||||..||.|||||.||||..||||
Sbjct 1304 GTTCCTGGAGTTGGGGAGCTCTTTGGAGGTAGCCTCAGGGAGGAACGGTACCACGTCCTAGAGCAGCGACTAGC 1377
Query 1260 CAGATCGGGACTTACAGAAGTCTACCAATGGTATCTGGACCTTCGTCGA-TTTGGATCTGTGCCACATGGAGGT 1332
.|||||.||||||||..|||.||||||.|||||.|||||.||||| |.| ||||||||||||||.||||||||.
Sbjct 1378 AAGATCAGGACTTACGAAAGCCTACCAGTGGTACCTGGATCTTCG-CAAGTTTGGATCTGTGCCCCATGGAGGC 1450
Query 1333 TTTGGGATGGGATTTGAACGCTACCTGCAGTGCATCTTGGGTGTTGACAATATCAAAGATGTTATCCCTTTCCC 1406
||.|||||||||||||||||||||.|.|||||||||.|.||.|||||||||||||||||||||||||||||.||
Sbjct 1451 TTCGGGATGGGATTTGAACGCTACTTACAGTGCATCCTAGGAGTTGACAATATCAAAGATGTTATCCCTTTTCC 1524
Query 1407 AAGGTTTCCTCA-TCATGCCTTTTA------------------------------------------------- 1430
|||||||.|||| ||.||.|||||.
Sbjct 1525 AAGGTTTACTCATTCGTGTCTTTTGTAGCTGAAAGACTGTTTAATGGAAAGTGCTCCATCACCTCATCTACACA 1598
Query 1431 -------------------------------------------------------------------------- 1430
Sbjct 1599 TGAGTATGTGTAGAAAAGACTGGGTGTTTGCAGTCTGGAAATGTGGATTTCAGTGCACAATTCTTGTGCTTTGA 1672
Query 1431 -------------------------------------------------------------------------- 1430
Sbjct 1673 GATGTACTATATGAAAAATAGAAATGGTCTTGATCATCTTAAGTCAAAGGCTTTTCATGGACAGATAAACTCCC 1746
Query 1431 -------------------------------------------------------------------------- 1430
Sbjct 1747 CCAAGGAGAAATACTAAGAGCAAGTGGACTTTCAAATCTGTTACCTCAATTAGGACTGGGCATGTTGTCCAGCT 1820
Query 1431 -------------------------------------------------------------------------- 1430
Sbjct 1821 AGTGGAGAAGCCGGTTCAGGAGAGTAACTTGAGCCCGGATAACATCTCAAGAAAGAGGAAAGGAAGATATGGAA 1894
Query 1431 -------------------------------------------------------------------------- 1430
Sbjct 1895 GTGTAGGATCTCAGCGTTCCTCAGGGACTCTGACTTGATAGCCATGTCTCACCCTGCTTTGCCTTTCATTGGTA 1968
Query 1431 -------------------------------------------------------------------------- 1430
Sbjct 1969 GCTCATTTCCCCTTGTTGTTTGTTTTTTAACAACTAGTGACTAAAAATAAGGTGATGTTGACCCTTTTCTTCCT 2042
Query 1431 -------------------------------------------------------------------------- 1430
Sbjct 2043 TGCCATTTAAACTTACATGACACCAATCTTATTCTCTGTGCTTTACTCAACTTTATAGAAGAAAATATTCCTTT 2116
Query 1431 -------------------------------------------------------------------------- 1430
Sbjct 2117 TCAGAGTCTAAATTGACTAATGAAGTGGCTATTCTGAATTGAACCATTCATCATTGGGTGGTGAAAAAAAATCA 2190
Query 1431 -------------------------------------------------------------------- 1430
Sbjct 2191 CATTTAATAACTGTTGATCTTTAGTTTTAAAAGTTAAAGAGCTAAAATTAACCATTTAAACTTGTCAA 2258
