Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14269
Subject:
XR_001785558.1
Aligned Length:
2497
Identities:
1074
Gaps:
1245

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GACGGAAGAGCGAGCACGGGGTGACGTAGCTCAGTTGCAACGTGCTTTAAGTCTGGGTCTGCACTCCGGTCCCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGTACGGTGTGACACTGACCGCTGTGTTCCGTGTAGTCGAACCTTCTGTGCTTTCGGGAGCGGGACGCGGAGGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGGTCCCGTGGGAACTGCTCGGGGCGCGGAGGGAAGAGCGACAGGAGCGCATGACGGCAGGACTGCGCGGCTG  222

Query    1  ------------------------------------------------------------------------AT  2
                                                                                    ||
Sbjct  223  AAAAAGGCTGCTCTCGGGGACTGTGAGCCGGGACGTAGCCCGGCATCCCGTGGAACCCTGTCCGGTCTCGCCAT  296

Query    3  GCTGGGGGTCCGCTGCCTGCTGCGGTCCG-TGCGCTTCTGTTCCTCCGCCCCCTTCCCCAAGCACAAACCTTCA  75
            |||.||||.|||..||||||| |||..|| |||||.||||||||||||...|||.|||||.||.|....|.||.
Sbjct  297  GCTCGGGGCCCGGCGCCTGCT-CGGCGCGCTGCGCCTCTGTTCCTCCGTTTCCTGCCCCAGGCCCCGCGCGTCT  369

Query   76  GCCAAACTGAGCGTGCGGGACGCTCTCGGGGCTCAGAACGCGAGTGGGGAGCGCATTAAGATCCAGGGATGGAT  149
            ||||||.||.|||||||||||||.|||.|||..|||.|||||||.||||||.||.|.|.|.|.|||||||||||
Sbjct  370  GCCAAAATGCGCGTGCGGGACGCCCTCAGGGTCCAGGACGCGAGAGGGGAGTGCGTAACGGTGCAGGGATGGAT  443

Query  150  TCGTTCTGTCCGATCCCAGAAGGAAGTCTTGTTCCTGCATGTAAATGATGGGTCATCTTTGGAAAGCCTTCAGG  223
            .||.||.|||.||||||||||||||||.||||||||||||||||||||.||.||.||||||||||||||||||.
Sbjct  444  CCGGTCCGTCAGATCCCAGAAGGAAGTTTTGTTCCTGCATGTAAATGACGGATCTTCTTTGGAAAGCCTTCAGA  517

Query  224  TTGTTGCAGATTCAGGCCTTGACAGTAGAGAATTAACTTTTGGGAGTTCTGTGGAAGTACAAGGGCAGCTGATA  297
            |||||||.||||||.||.|.||||||||||||||.||||||||||||||||||.||||.||||||||||||.|.
Sbjct  518  TTGTTGCGGATTCAAGCTTCGACAGTAGAGAATTGACTTTTGGGAGTTCTGTGCAAGTCCAAGGGCAGCTGGTC  591

Query  298  AAAAGTCCATCCAAAAGGCAAAATGTGGAACTGAAGGCAGAAAAAATTAAAGTTATTGGAAATTGTGATGCCAA  371
            |||||||..|||||.|||||||||||||||||||||||||||||.|||.|.|||||||||.|.|||||.|||||
Sbjct  592  AAAAGTCAGTCCAAGAGGCAAAATGTGGAACTGAAGGCAGAAAAGATTGAGGTTATTGGAGACTGTGAAGCCAA  665

Query  372  GGATTTCCCCATCAAATATAAAGAGAGGCATCCTCTGGAGTACCTGCGACAATATCCTCACTTTAGGTGTAGGA  445
            ||..|||||.||.||.|||||.|||.|.||.|||||||||||||||.||||.|||||||||.|.|||||.||||
Sbjct  666  GGCATTCCCTATAAAGTATAAGGAGCGACACCCTCTGGAGTACCTGAGACAGTATCCTCACCTGAGGTGCAGGA  739

Query  446  CTAACGTTCTGGGTTCTATATTGAGGATTCGCAGTGAAGCGACAGCTGCTATTCATTCTTTCTTTAAGGACAGT  519
            ||||.|.|||||||||||||||||||.|.|||||||||||.|||||||||||||||||.|.|||||||||||.|
Sbjct  740  CTAATGCTCTGGGTTCTATATTGAGGGTCCGCAGTGAAGCCACAGCTGCTATTCATTCCTACTTTAAGGACAAT  813

Query  520  GGCTTTGTACATATTCATACTCCAATAATCACATCCAATGACTCTGAGGGAGCTGGAGAACTTTTTCAACTTGA  593
            ||||||||.||.||||||||.|||.||.||||||||||.||||.||||||.||.|||||.|||||||||.|.||
Sbjct  814  GGCTTTGTGCACATTCATACCCCAGTACTCACATCCAACGACTGTGAGGGGGCCGGAGAGCTTTTTCAAGTGGA  887

Query  594  ACCTTCAGGCAAACTTAAGGTACCTGAGGAGAATTTCTTCAATGTTCCTGCTTTCTTAACTGTCTCAGGACAAC  667
            .||||||.|||||.|.||||.|||..||||||.||||||..|||||||||||||||||||||||||||||||||
Sbjct  888  GCCTTCAAGCAAAATAAAGGGACCCAAGGAGAGTTTCTTTGATGTTCCTGCTTTCTTAACTGTCTCAGGACAAC  961

Query  668  TTCATCTAGAAGTGATGTCAGGAGCTTTTACTCAAGTGTTTACCTTTGGTCCGACCTTCCGAGCTGAAAATTCT  741
            ||||.||||||||||||||||||||||||||.|||||.||||||||||||||.||.|||||||||||.||||||
Sbjct  962  TTCACCTAGAAGTGATGTCAGGAGCTTTTACCCAAGTATTTACCTTTGGTCCAACATTCCGAGCTGAGAATTCT  1035

Query  742  CAGAGCCGGAGGCACCTGGCAGAGTTTTATATGATAGAAGCAGAGATTTCTTTTGTTGACAGCCTTCAAGATCT  815
            |||||||||||.||||||||.||.|||||||||.|.|||||.|||||||||||||||||.||||||||.|||||
Sbjct 1036  CAGAGCCGGAGACACCTGGCTGAATTTTATATGGTTGAAGCGGAGATTTCTTTTGTTGAAAGCCTTCAGGATCT  1109

Query  816  TATGCAGGTTATAGAGGAACTGTTCAAGGCTACAACAATGATGGTTCTCTCAAAATGTCCTGAAGATGTTGAAC  889
            .||||||||.||.||||||||.||||||||.||.||...|||||||||||||.|.||||||||||||||||||.
Sbjct 1110  CATGCAGGTCATGGAGGAACTCTTCAAGGCGACCACGGAGATGGTTCTCTCACACTGTCCTGAAGATGTTGAAT  1183

Query  890  TCTGTCACAAATTCATAGCACCTGGCCAAAAGGACAGATTAGAACATATGCTAAAAAACAACTTTTTAATCATT  963
            |.||||||.|.||||||||..|||||||.|||                                      ||||
Sbjct 1184  TGTGTCACCAGTTCATAGCTGCTGGCCAGAAG--------------------------------------CATT  1219

Query  964  TCTTATACTGAAGCAGTGGAGATCTTAAAGCAAGCATCCCAGAACTTCACCTTTACCCCAGAGTGGGGTGCTGA  1037
            ||||||||.||.|||.|.||||||||||||||||||||||||||||||.|||||||.||               
Sbjct 1220  TCTTATACGGAGGCAATTGAGATCTTAAAGCAAGCATCCCAGAACTTCGCCTTTACACC---------------  1278

Query 1038  CCTACGGACTGAACATGAAAAGTACCTGGTGAAGCACTGTGGCAACATACCTGTCTTCGTTATTAATTATCCAT  1111
                                                                                      
Sbjct 1279  --------------------------------------------------------------------------  1278

Query 1112  TAACACTCAAGCCTTTCTACATGAGGGATAATGAAGATGGCCCTCAGCACACGGTTGCTGCTGTTGATCTTCTG  1185
                                                             ||.||||||||||||.|||||||||
Sbjct 1279  -------------------------------------------------CAAGGTTGCTGCTGTAGATCTTCTG  1303

Query 1186  GTTCCTGGAGTTGGGGAACTCTTTGGAGGAGGCCTCAGAGAAGAACGATACCATTTCTTAGAGGAGCGCTTAGC  1259
            |||||||||||||||||.|||||||||||..|||||||.||.|||||.|||||..||.|||||.||||..||||
Sbjct 1304  GTTCCTGGAGTTGGGGAGCTCTTTGGAGGTAGCCTCAGGGAGGAACGGTACCACGTCCTAGAGCAGCGACTAGC  1377

Query 1260  CAGATCGGGACTTACAGAAGTCTACCAATG--------------------------------------------  1289
            .|||||.||||||||..|||.||||||.||                                            
Sbjct 1378  AAGATCAGGACTTACGAAAGCCTACCAGTGGTAAGGATGTGGCCTATTCTGAGTCCCTGCAAAGGATTGTTACT  1451

Query 1290  -----------------GTATCTGGACCTTCGTCGA-TTTGGATCTGTGCCACATGGAGGTTTTGGGATGGGAT  1345
                             |||.|||||.||||| |.| ||||||||||||||.||||||||.||.||||||||||
Sbjct 1452  TGTGCTTCCATTCCCCTGTACCTGGATCTTCG-CAAGTTTGGATCTGTGCCCCATGGAGGCTTCGGGATGGGAT  1524

Query 1346  TTGAACGCTACCTGCAGTGCATCTTGGGTGTTGACAATATCAAAGATGTTATCCCTTTCCCAAGGTTTCCTCA-  1418
            |||||||||||.|.|||||||||.|.||.|||||||||||||||||||||||||||||.|||||||||.|||| 
Sbjct 1525  TTGAACGCTACTTACAGTGCATCCTAGGAGTTGACAATATCAAAGATGTTATCCCTTTTCCAAGGTTTACTCAT  1598

Query 1419  TCATGCCTTTTA--------------------------------------------------------------  1430
            ||.||.|||||.                                                              
Sbjct 1599  TCGTGTCTTTTGTAGCTGAAAGACTGTTTAATGGAAAGTGCTCCATCACCTCATCTACACATGAGTATGTGTAG  1672

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 1673  AAAAGACTGGGTGTTTGCAGTCTGGAAATGTGGATTTCAGTGCACAATTCTTGTGCTTTGAGATGTACTATATG  1746

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 1747  AAAAATAGAAATGGTCTTGATCATCTTAAGTCAAAGGCTTTTCATGGACAGATAAACTCCCCCAAGGAGAAATA  1820

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 1821  CTAAGAGCAAGTGGACTTTCAAATCTGTTACCTCAATTAGGACTGGGCATGTTGTCCAGCTAGTGGAGAAGCCG  1894

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 1895  GTTCAGGAGAGTAACTTGAGCCCGGATAACATCTCAAGAAAGAGGAAAGGAAGATATGGAAGTGTAGGATCTCA  1968

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 1969  GCGTTCCTCAGGGACTCTGACTTGATAGCCATGTCTCACCCTGCTTTGCCTTTCATTGGTAGCTCATTTCCCCT  2042

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2043  TGTTGTTTGTTTTTTAACAACTAGTGACTAAAAATAAGGTGATGTTGACCCTTTTCTTCCTTGCCATTTAAACT  2116

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2117  TACATGACACCAATCTTATTCTCTGTGCTTTACTCAACTTTATAGAAGAAAATATTCCTTTTCAGAGTCTAAAT  2190

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2191  TGACTAATGAAGTGGCTATTCTGAATTGAACCATTCATCATTGGGTGGTGAAAAAAAATCACATTTAATAACTG  2264

Query 1431  -------------------------------------------------------  1430
                                                                   
Sbjct 2265  TTGATCTTTAGTTTTAAAAGTTAAAGAGCTAAAATTAACCATTTAAACTTGTCAA  2319

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.