Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14686
Subject:
NM_001145831.1
Aligned Length:
2368
Identities:
1801
Gaps:
341

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGAATGTAGAAAATACAGGTGGGCGGCTCTTTGGCATCGGGAGGTGCTCAAGCCTGTCCGGGGCACCAGGCCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGACCCCGTGGTACATAGGACCGTGGAGGCCATGTCCCAGCTTCAGGAGGAGCTGGTAGTCCTTCGGGAGAGGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGGCCCTCCACGACAGTGACCGGCAAGCCACAACCACCCAGCTGCAGAACCAGGTGGAGAATCTAAAGGAAAAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTCATTAGCCAGGCCCAGGAAGTGAGCCGACTGCGATCAGAACTGGGAGGCACGGACGCGGAGAAGCACAGGGA  296

Query    1  -------ATGGTGGAGAATGAGCGACTGAGGCAGGAGATGCGGCGCTGTGAGGCCGAGCTGCAAGAGCTGCGCA  67
                   ||||||||||||||||..||||||||||||.||.||||||||||||.|||.|||||.|||||.||..
Sbjct  297  CAGACTGATGGTGGAGAATGAGCAGCTGAGGCAGGAGCTGAGGCGCTGTGAGGTCGAACTGCAGGAGCTTCGGG  370

Query   68  CAAAGCCAGCAGGT----CCCTGCCCAGGTTGTGAGCACAGCCAGGAGAGCGCCCAGCTCCGTGACAAGCTGTC  137
            |    |||||.|||    ||||||...||.|||||||||||||||||||||..|||||||||||||||||||||
Sbjct  371  C----CCAGCCGGTGGTGCCCTGCGAGGGCTGTGAGCACAGCCAGGAGAGCAGCCAGCTCCGTGACAAGCTGTC  440

Query  138  CCAGCTGCAGCTGGAGATGGCGGAAAGCAAAGGCATGCTGTCAGAGCTGAACCTAGAGGTGCAGCAGAAGACCG  211
            ||||||||||.||||..||||.||.|.|||||||||||||||.||.||||||||.||||||||||||||.||.|
Sbjct  441  CCAGCTGCAGTTGGAAGTGGCTGAGAACAAAGGCATGCTGTCGGAACTGAACCTGGAGGTGCAGCAGAAAACGG  514

Query  212  ACCGGCTGGCTGAGGTGGAGCTGCGACTCAAGGACTGCCTGGCTGAGAAGGCACAGGAGGAGGAGCGGCTTAGT  285
            ||||||||||.|||||.||||||||.|||||||||||.|||||||||||.||.|||||||||||.|||||.||.
Sbjct  515  ACCGGCTGGCAGAGGTAGAGCTGCGCCTCAAGGACTGTCTGGCTGAGAAAGCCCAGGAGGAGGAACGGCTCAGC  588

Query  286  CGGCGCCTGCGTGACAGCCACGAGACCATTGCCAGCCTGCGGGCCCAGTCCCCACCTGTCAAGTATGTCATCAA  359
            ||||||||||||||||||||.|||||.||.|||||.|||.|||||||||||||||||||.||||||||||||||
Sbjct  589  CGGCGCCTGCGTGACAGCCATGAGACTATCGCCAGTCTGAGGGCCCAGTCCCCACCTGTTAAGTATGTCATCAA  662

Query  360  GACAGTGGAGGTGGAGTCGTCCAAGACCAAGCAGGCCCTCAGCGAGTCCCAGGCCCGGAACCAGCACCTGCAGG  433
            ||||||||||||.|||||.|||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct  663  GACAGTGGAGGTAGAGTCTTCCAAGACCAAGCAGGCCCTCAGCGAGTCCCAGACCCGGAACCAGCACCTGCAGG  736

Query  434  AGCAGGTGGCTATGCAGAGGCAGGTGCTGAAGGAGATGGAACAGCAGCTGCAGAGCTCACACCAGCTGACCGCG  507
            ||||.|||||.||||||.||||||||||||||||||||||.||||||||.||||.|||.|||||||||||.|..
Sbjct  737  AGCAAGTGGCCATGCAGCGGCAGGTGCTGAAGGAGATGGAGCAGCAGCTACAGAACTCCCACCAGCTGACAGTC  810

Query  508  CGGCTCCGGGCGCAGATTGCCATGTACGAGTCAGAGCTGGAGCGGGCCCATGGGCAGATGCTGGAGGAGATGCA  581
            |.|.|.|||||.||||||||||||||.|||.||||||||||||||||.||.|||||||||||||||||||||||
Sbjct  811  CAGTTGCGGGCTCAGATTGCCATGTATGAGGCAGAGCTGGAGCGGGCACACGGGCAGATGCTGGAGGAGATGCA  884

Query  582  GTCCCTGGAAGAGGACAAGAACCGGGCCATTGAGGAGGCCTTTGCCAGAGCCCAGGTGGAGATGAAGGCTGTGC  655
            ||||.||||.|||||.|||||||||||||||||||||||||||||..|.||||||||||||||||||||.||.|
Sbjct  885  GTCCTTGGAGGAGGATAAGAACCGGGCCATTGAGGAGGCCTTTGCACGGGCCCAGGTGGAGATGAAGGCAGTAC  958

Query  656  ACGAGAATCTAGCAGGCGTCCGGACCAACTTGCTGACCTTGCAGCCGGCACTGCGGACCCTCACCAACGACTAC  729
            |||||||.||.|||||.|||.||||||||.|||||||..|||||||.||.|||.||||||||||||||||||||
Sbjct  959  ACGAGAACCTGGCAGGTGTCAGGACCAACCTGCTGACGCTGCAGCCTGCGCTGAGGACCCTCACCAACGACTAC  1032

Query  730  AATGGGCTCAAGCGGCAGGTGCGCGTCTTCCCACTGCTGCTGCAGGAGGCCCTCAGGAGTGTCAAGGCCGAGAT  803
            |||||||||||||||||||||||.|.||||||..||||||||||||||||.||||||||||||||.||.|||||
Sbjct 1033  AATGGGCTCAAGCGGCAGGTGCGGGGCTTCCCCTTGCTGCTGCAGGAGGCTCTCAGGAGTGTCAAAGCTGAGAT  1106

Query  804  AGGCCAGGCCATCGAGGAGGTCAACAGCAACAACCAGGAGCTGCTGCGCAAGTACCGCCGCGAGCTGCAGCTGC  877
            .||||||||||||||||||||.||.||||||||||||||||||.||||||||||||||||.||.||.|||||||
Sbjct 1107  CGGCCAGGCCATCGAGGAGGTTAATAGCAACAACCAGGAGCTGTTGCGCAAGTACCGCCGGGAACTACAGCTGC  1180

Query  878  GTAAGAAGTGCCACAATGAGCTCGTGCGGCTGAAAGGGAACATCCGAGTGATTGCTCGTGTCCGGCCAGTCACC  951
            |.|||||.|||||.||.|||||.||.||||||||.||.||||||||.||||||||.||.|||||||||||||||
Sbjct 1181  GCAAGAAATGCCATAACGAGCTGGTCCGGCTGAAGGGAAACATCCGGGTGATTGCCCGAGTCCGGCCAGTCACC  1254

Query  952  AAAGAGGATGGGGAAGGACCTGAGGCCACCAATGCTGTGACTTTCGATGCCGACGACGACTCCATCATCCACCT  1025
            ||.||||||||.||||||||.|||||.||||||||||||||.||.||..|.||.||.|||||||||||||||||
Sbjct 1255  AAGGAGGATGGAGAAGGACCCGAGGCAACCAATGCTGTGACCTTTGACCCTGATGATGACTCCATCATCCACCT  1328

Query 1026  GCTGCACAAGGGCAAGCCTGTGTCCTTCGAGCTGGACAAGGTCTTCTCCCCACAGGCCTCGCAGCAGGACGTGT  1099
            ||||||||||||||||||.|||||||||||||||||||||                              ||||
Sbjct 1329  GCTGCACAAGGGCAAGCCCGTGTCCTTCGAGCTGGACAAG------------------------------GTGT  1372

Query 1100  TCCAGGAGGTGCAGGCCCTGGTCACCTCTTGCATTGATGGCTTCAATGTCTGCATCTTTGCGTACGGCCAGACG  1173
            |||||||||||||||||||..|.|||||.|||||.|||||||||||||||||.||||||||.|||||||||||.
Sbjct 1373  TCCAGGAGGTGCAGGCCCTCATTACCTCCTGCATCGATGGCTTCAATGTCTGTATCTTTGCTTACGGCCAGACA  1446

Query 1174  GGCGCCGGCAAGACGTACACGATGGAGGGGACCGCTGAGAACCCAGGTATCAACCAGCGGGCCCTGCAGCTGCT  1247
            ||.|||||||||||.||.||.|||||||||||..|.||||||||.||.||||||||||||||||||||||||||
Sbjct 1447  GGTGCCGGCAAGACATATACAATGGAGGGGACTCCCGAGAACCCGGGCATCAACCAGCGGGCCCTGCAGCTGCT  1520

Query 1248  CTTCTCCGAGGTGCAGGAGAAGGCGTCTGACTGGGAGTACACCATCACCGTCAGCGCTGCGGAGATCTACAATG  1321
            ||||||.|||||||||||||||||||||||||||.||||||.|||||||||||||||.||.|||||.|||||||
Sbjct 1521  CTTCTCGGAGGTGCAGGAGAAGGCGTCTGACTGGCAGTACAACATCACCGTCAGCGCAGCTGAGATTTACAATG  1594

Query 1322  AGGTCCTCAGGGACCTGCTAGGGAAAGAGCCTCAGGAAAAACTGGAGATCCGGCTGTGCCCAGACGGCAGTGGG  1395
            |.|||||||||||||||||.|||||||||||||||||.||.|||||||||||.||||||||.||.|||||||||
Sbjct 1595  AAGTCCTCAGGGACCTGCTGGGGAAAGAGCCTCAGGAGAAGCTGGAGATCCGACTGTGCCCGGATGGCAGTGGG  1668

Query 1396  CAGCTGTATGTACCAGGGCTGACTGAGTTCCAAGTGCAGAGCGTGGACGACATCAACAAGGTGTTTGAGTTTGG  1469
            ||.||||||||.||||||||||||||||||||.||||||||||||||.||||||||||||||||||||||||||
Sbjct 1669  CAACTGTATGTGCCAGGGCTGACTGAGTTCCAGGTGCAGAGCGTGGATGACATCAACAAGGTGTTTGAGTTTGG  1742

Query 1470  CCACACTAATCGCACGACCGAGTTCACCAACCTGAACGAGCACAGCTCCCGCTCGCACGCACTGCTCATCGTGA  1543
            |.|||..||.|||||.|||||||||||||||||||||||.||||||||||||||.|||||.|||||||||||||
Sbjct 1743  CTACAACAACCGCACCACCGAGTTCACCAACCTGAACGAACACAGCTCCCGCTCCCACGCTCTGCTCATCGTGA  1816

Query 1544  CGGTGCGAGGCGTGGACTGCAGCACAGGCCTCCGCACCACGGGGAAGCTGAACCTGGTGGACTTGGCTGGCTCG  1617
            |.|||.||||.|||||.|||||||||||||||||||||||||||||||||||||||||||||.|||||||.||.
Sbjct 1817  CAGTGAGAGGTGTGGATTGCAGCACAGGCCTCCGCACCACGGGGAAGCTGAACCTGGTGGACCTGGCTGGTTCA  1890

Query 1618  GAGCGCGTGGGCAAGTCGGGGGCCGAGGGCAGCCGCCTGCGGGAGGCGCAGCACATCAACAAGTCGCTGTCGGC  1691
            |||||.|||||||||||||||||.|||||||.|||||||||.|||||.|||||||||||||.|||.||.||.||
Sbjct 1891  GAGCGTGTGGGCAAGTCGGGGGCTGAGGGCAACCGCCTGCGAGAGGCACAGCACATCAACAGGTCACTATCCGC  1964

Query 1692  TCTGGGGGACGTCATTGCTGCCCTGCGCTCCCGCCAGGGCCACGTGCCCTTCCGCAACTCCAAGCTCACCTACC  1765
            .||||||||||||||||||||||||||.||.||.||.|||||.||||||||||||||.|||||.||||||||||
Sbjct 1965  CCTGGGGGACGTCATTGCTGCCCTGCGTTCTCGACAAGGCCATGTGCCCTTCCGCAATTCCAAACTCACCTACC  2038

Query 1766  TGCTGCAGGATTCGCTTAGTGGTGACAGCAAGACCCTCATGGTGGTACAGGTGTCCCCCGTGGAGAAGAACACT  1839
            ||||||||||.||.||.||||||||||||||||||||.||||||||||||||||||||.||||||||||||||.
Sbjct 2039  TGCTGCAGGACTCACTCAGTGGTGACAGCAAGACCCTTATGGTGGTACAGGTGTCCCCAGTGGAGAAGAACACC  2112

Query 1840  AGCGAGACGCTCTATTCCCTCAAGTTTGCTGAGAGGGTGCGCTCTGTGGAGCTGGGGCCTGGGCTACGCAGGGC  1913
            ||||||||.||.||.|||||||..||||||||||||||.||||||||||||.||||.||||||...|||.|..|
Sbjct 2113  AGCGAGACTCTGTACTCCCTCAGATTTGCTGAGAGGGTTCGCTCTGTGGAGTTGGGCCCTGGGTCCCGCCGCAC  2186

Query 1914  AGAGCTTGGGTCCTGGTCAAGCCAGGAGCATCTAGAGTGGGAGCCGGCTTGTCAGACGCCACAGCCCTCGGCCT  1987
            ||||||.||.||||||||||||||||||||.||.|||||||||||||||||.|||||.||||||||..|.||..
Sbjct 2187  AGAGCTGGGTTCCTGGTCAAGCCAGGAGCACCTGGAGTGGGAGCCGGCTTGCCAGACACCACAGCCTACAGCAC  2260

Query 1988  GGGCCCACTCAGCCCCCAGCTCTGGGACCAGTAGCCGCCCTGGATCCATCCGGAGGAAGCTGCAGCCCTCGGCC  2061
            |.||||||||.|||||..||||||||||||||||||||||.||.||||||||.|||||.||||||||.||.|||
Sbjct 2261  GAGCCCACTCTGCCCCTGGCTCTGGGACCAGTAGCCGCCCAGGTTCCATCCGAAGGAAACTGCAGCCGTCAGCC  2334

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