Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14883
• Subject: NM_001348279.2
• Aligned Length: 1439
• Identities: 379
• Gaps: 1015

Alignment

Query    1  ATGGAACTCTTAACATTCAGGGATGTGGCCATAGAATTCTCTCCAGAAGAGTGGAAATGCCTGGACCCTGACCA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGAACTCTTAACATTCAGGGATGTGGCCATAGAATTCTCTCCAGAAGAGTGGAAATGCCTGGACCCTGACCA  74

Query   75  GCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGGGTGTTGCTATCTCTAACC  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGGGTGTTGCTATCTCTAACC  148

Query  149  CAGACCTGGTCACCTGTCTGGAGCAAAGAAAAGAGCCCTACAATGTGAAGATACATAAGATCGTAGCCAGACCC  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CAGACCTGGTCACCTGTCTGGAGCAAAGAAAAGAGCCCTACAATGTGAAGATACATAAGATCGTAGCCAGACCC  222

Query  223  CCAGCTAT-GTGTT---CTCATTTCACCCAAGACCATTGGCCAGTGCAGGGCATAGAAGATTCATTCCACAAAC  292
            ||||  || |.|||   |||.|.|||||| ||||   |||  ||||||               ||..|||.|.|
Sbjct  223  CCAG--ATGGAGTTTCGCTCTTGTCACCC-AGAC---TGG--AGTGCA---------------ATGGCACGATC  273

Query  293  TTATACTGAGAAGATATGAGAAATGTGGACATGATAATTTACAATTAAGAAAAGGCTGTAAAAGTTTGAATGAG  366
            ||                                                   |||              |||.
Sbjct  274  TT---------------------------------------------------GGC--------------TGAC  282

Query  367  TGTA------AGTTGCAGAAAGGAGGTTATAATGAATTTAATGAATGCTTGTCAACTAC--CCAGAGCAAAATA  432
            ||.|      |..|.|.||      |||..|.|||             ||.||  ||.|  ||   ||      
Sbjct  283  TGCAACCTCTACCTCCCGA------GTTCAAGTGA-------------TTCTC--CTGCCTCC---GC------  326

Query  433  CTTCAGTGTAAAGCAAGTGTCAAAGTTG---TTAGTAAATTTTCAAATTCAAACAAACGTAAGACAAGACATAC  503
            ||.|         |||||     ||.||   |||||                                 |||  
Sbjct  327  CTCC---------CAAGT-----AGCTGGGATTAGT---------------------------------CAT--  351

Query  504  TGGAGAG-AAACACTTTAAAGAATGTGGCAAATCATTTCAGAAGTTTTCACACCTAACTCAACATAAGGTAATT  576
                ||| .|.|||        |..||||.|||  |||.|.|..|||         |.|..|.||..|||  ||
Sbjct  352  ----GAGCCACCAC--------ACCTGGCTAAT--TTTTATATTTTT---------AGTAGAGATGGGGT--TT  400

Query  577  CATGCTGGAGAGAAACCCTACACTTGTGAAGAATG-TGGCAAAGCCTTTAAATGGTCTTTAATATTTAATGAAC  649
            |             |||               ||| ||||.|.||       ||||||..||   .|..|||.|
Sbjct  401  C-------------ACC---------------ATGTTGGCCAGGC-------TGGTCTCGAA---CTCCTGACC  436

Query  650  ATAAGAGAATTCATACTGGAGAGAAACCTTTTACTTGTGAAGAATGTGGCAGCATCTTTACCACATCCTCACAC  723
            ..|||                                                                     
Sbjct  437  TCAAG---------------------------------------------------------------------  441

Query  724  TTTGCTAAGCATAAAATAATTCATACTGGAGAAAAACCCTATAAATGTGAAGAATGTGGCAAAGCCTTTAATAG  797
                                                                                      
Sbjct  442  --------------------------------------------------------------------------  441

Query  798  GTTCACAACCCTTACTAAACATAAGAGAATTCATGCTGGAGAGAAACCCATCACATGTGAAGAATGTAGGAAAA  871
                                                                                      
Sbjct  442  --------------------------------------------------------------------------  441

Query  872  TCTTTACCTCATCCTCAAACTTTGCNAAACATAAGCGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAA  945
                                                                                      
Sbjct  442  --------------------------------------------------------------------------  441

Query  946  TGTGGCAAAGCCTTTAATAGGTCCACAACCCTTACTAAACATAAGAGAATTCATACTGGAGAGAAACCCTACAC  1019
                                                                                      
Sbjct  442  --------------------------------------------------------------------------  441

Query 1020  ATGTGAAGAATGTGGCAAAGCTTTTAGACAGTCCTCAAAACTGAATGAACATAAGAAAGTTCATACTGGAGAGC  1093
                                                                                      
Sbjct  442  --------------------------------------------------------------------------  441

Query 1094  GGCCCTACAAATGTGATGAATGTGGCAAAGCCTTTGGACGGTCCAGGGTCCTGAATGAACATAAAAAAATTCAT  1167
                                                                                      
Sbjct  442  --------------------------------------------------------------------------  441

Query 1168  ACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAGACGGTCCACAGATCGGAGTCAACATAA  1241
                                                                                      
Sbjct  442  --------------------------------------------------------------------------  441

Query 1242  GAAAATTCATAGTGCAGATAAACCCTACAAATGTAAAGAATGTGACAAAGCCTTTAAACAATTTTCGCTCCTGA  1315
                                                                                      
Sbjct  442  --------------------------------------------------------------------------  441

Query 1316  GTCAACATAAGAAAATTCATACTGTAGATAAACCCTANAAATGTAAAGATTGTGACAAAGCCTTTAAACGGTTC  1389
                                                                                      
Sbjct  442  --------------------------------------------------------------------------  441

Query 1390  TCACACCTGAATAAACATAAGAAAATTCATACT  1422
                                             
Sbjct  442  ---------------------------------  441