Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14883
Subject:
NM_182524.4
Aligned Length:
1960
Identities:
1249
Gaps:
554

Alignment

Query    1  ATGGAACTCTTAACATTCAGGGATGTGGCCATAGAATTCTCTCCAGAAGAGTGGAAATGCCTGGACCCTGACCA  74
            |||||||||.|||||||||||||||||||||||||||||||.||.||||||||||||||.||||||||||.|||
Sbjct    1  ATGGAACTCGTAACATTCAGGGATGTGGCCATAGAATTCTCCCCTGAAGAGTGGAAATGTCTGGACCCTGCCCA  74

Query   75  GCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGGGTGTTGCTATCTCTAACC  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||..||||||||||
Sbjct   75  GCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGGGTTTTGTGATCTCTAACC  148

Query  149  CAGACCTGGTCACCTGTCTGGAGCAAAGAAAAGAGCCCTACAATGTGAAGATACATAAGATCGTAGCCAGACCC  222
            |||||||||||||||||||||||||||.|||||||||||.||||.|||||||||||.|||..|.|||||.||||
Sbjct  149  CAGACCTGGTCACCTGTCTGGAGCAAATAAAAGAGCCCTGCAATTTGAAGATACATGAGACAGCAGCCAAACCC  222

Query  223  CCAGCTATGTGTTCTCATTTCACCCAAGACCATTGGCCAGTGCAGGGCATAGAAGATTCATTCCACAAACTTAT  296
            ||||||||.|||||||.|||||.||||||||.||..|||||||||||.||||||||||||||||||||||||||
Sbjct  223  CCAGCTATATGTTCTCCTTTCAGCCAAGACCTTTCACCAGTGCAGGGGATAGAAGATTCATTCCACAAACTTAT  296

Query  297  ACTGAGAAGATATGAGAAATGTGGACATGATAATTTACAATTAAGAAAAGGCTGTAAAAGTTTGAATGAGTGTA  370
            |||||.||||||.|||||||||||||||||.|||||||||||||||||||||||||||.||.||||||||||||
Sbjct  297  ACTGAAAAGATACGAGAAATGTGGACATGAGAATTTACAATTAAGAAAAGGCTGTAAACGTGTGAATGAGTGTA  370

Query  371  AGTTGCAGAAAGGAGGTTATAATGAATTTAATGAATGCTTGTCAACTACCCAGAGCAAAATACTTCAGTGTAAA  444
            ||.||||||||||||.|.||||||.|.||.|..|.|||||||||||||||||||||||||||.||||.|||||.
Sbjct  371  AGGTGCAGAAAGGAGTTAATAATGGAGTTTACCAGTGCTTGTCAACTACCCAGAGCAAAATATTTCAATGTAAT  444

Query  445  GCAAGTGTCAAAGTTGTTAGTAAATTTTCAAATTCAAACAAACGTAAGACAAGACATACTGGAGAGAAACACTT  518
            .||.||||.||||||.|||||||||||||||||||||||||||.|||||.||||||||||||||||||||.|||
Sbjct  445  ACATGTGTTAAAGTTTTTAGTAAATTTTCAAATTCAAACAAACATAAGATAAGACATACTGGAGAGAAACCCTT  518

Query  519  TAA------AGAATGTGGCAAATCATTTCAGAAGTTTTCACACCTAACTCAACATA-AGGTAATTCATGCTGGA  585
            |||      |||||||||||.|||.|||.|.|   |.||||||||||||||||||| ||| |||||||||||||
Sbjct  519  TAAATGTACAGAATGTGGCAGATCGTTTTACA---TGTCACACCTAACTCAACATACAGG-AATTCATGCTGGA  588

Query  586  GAGAAACCCTACACTTGTGAAGAATGTGGCAAAGCCTTTAAATGGTCTTTAATATTTAATGAACATAAGAGAAT  659
            |||||||||||||..||||||.|||||||||||||||||||..||||...|..|.|||.|.|||||||||||||
Sbjct  589  GAGAAACCCTACAAATGTGAAAAATGTGGCAAAGCCTTTAATAGGTCCACATCACTTAGTAAACATAAGAGAAT  662

Query  660  TCATACTGGAGAGAAACCTTTTACTTGTGAAGAATGTGGC--AGCATCTTTA------CCACA--TC-------  716
            ||||||||||||||||||.|..||.|||||||||||||||  |||  |||||      |||||  ||       
Sbjct  663  TCATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCAAAGC--CTTTAGACGGTCCACAGTTCTGAACGA  734

Query  717  -----------CTCACACT-----------------------------TTGCTAAG------------------  732
                       .|||.|||                             |.||.|||                  
Sbjct  735  ACATAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTACAAGGTCCACAA  808

Query  733  -----------CATAAAATAATTCATACTGGAGAAAAACCCTATAAATGTGAAGAATGTGGCAAAGCCTTTA-A  794
                       ||.||.|.|||||||||||||||.||||||||.||||||.||||||||||||||||||||| |
Sbjct  809  CACTGAATGAACACAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGCCTTTAGA  882

Query  795  TAGGTTCACAACCCTTACTAAACATAAGAGAATTCATGCTGGAGAGAAACCC-----AT---------------  848
            | |||.|||||.|||.|.|.|||||||||..||||||.||||||||||||||     ||               
Sbjct  883  T-GGTCCACAAGCCTGAATGAACATAAGAATATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCA  955

Query  849  ----------------------------------------------------------------CACATGTGAA  858
                                                                            ||||||||||
Sbjct  956  AAGCCTTTAGACAGTCCAGGAGCCTGAATGAACATAAAAATATTCATACTGGCGAAAAACCCTACACATGTGAA  1029

Query  859  GAATGTAGGAAAATCTTT--ACCTCATCCTC-------------------------------------AAACTT  893
            .||||| ||.|||.||||  ||| .||||||                                     ||||||
Sbjct 1030  AAATGT-GGCAAAGCTTTTAACC-AATCCTCAAGTCTTATTATACACAGGAGCATTCATTCTGAACAAAAACTT  1101

Query  894  TGC-----------------------------------------------NAAACATAAGCGAATTCATACTGG  920
            |.|                                               .|||||||||.|||||||||||||
Sbjct 1102  TACAAATGTGAAGAATGTGGCAAAGCCTTTACTTGGTCCTCATCCCTTAATAAACATAAGAGAATTCATACTGG  1175

Query  921  AGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAATAGGTCCACAACCCTTACTAAACATAAGAGAA  994
            ||||||||||||||.|||||||||||||||||||||.|||.||||||||.||..||||.|||||||||||||||
Sbjct 1176  AGAGAAACCCTACACATGTGAAGAATGTGGCAAAGCTTTTTATAGGTCCTCACACCTTGCTAAACATAAGAGAA  1249

Query  995  TTCATACTGGAGAGAAACCCTACAC-------------------------------------------------  1019
            |||||||||||||||||||||||||                                                 
Sbjct 1250  TTCATACTGGAGAGAAACCCTACACGTGCGAAGAATGTGGCAAAGCTTTTAACCAATCCTCAACTCTTATATTA  1323

Query 1020  -----------------------------------ATGTGAAGAATGTGGCAAAGCTTTTAGACAGTCCTCAAA  1058
                                               |||||||||||||||||||||.||||.||.||||.|||.
Sbjct 1324  CACAAGAGAATCCATTCTGGGCAAAAACCTTACAAATGTGAAGAATGTGGCAAAGCCTTTACACGGTCCACAAC  1397

Query 1059  ACTGAATGAACATAAGAAAGTTCATACTGGAGAGCGGCCCTACAAATGTGATGAATGTGGCAAAGCCTTTGGAC  1132
            ||||||.||||||||||||.||||||||||.|||...||||||||||||||.||||||||||||||.||...|.
Sbjct 1398  ACTGAACGAACATAAGAAAATTCATACTGGCGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTCATAT  1471

Query 1133  GGTCC---AGGGTCCTGAATGAACATAAAAAAATTCATACTGGAGAGAAACCC---------------------  1182
            |||||   ||   |||||||||||||||.||.|||||||||||||||||||||                     
Sbjct 1472  GGTCCGCAAG---CCTGAATGAACATAAGAATATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGC  1542

Query 1183  ---------------------------------------------------------------TACAAATGTGA  1193
                                                                           |||||||||||
Sbjct 1543  AAAGCTTTTAACCAATCCTCAGGCCTTATTATACACAGGAGCATTCATTCTGAACAAAAACTTTACAAATGTGA  1616

Query 1194  AGAATGTGGCAAAGCCTTTAGACGGTCCACAGATCGGAGTCAACATAAGAAAATTCATAGTGCAGATAAACCCT  1267
            ||||||||||||||||||||..||||||||||..|.||.|.|||||||||||||||||..||.|||.|||||||
Sbjct 1617  AGAATGTGGCAAAGCCTTTACTCGGTCCACAGCCCTGAATGAACATAAGAAAATTCATTCTGGAGAGAAACCCT  1690

Query 1268  ACAAATGTAAAGAATGTGACAAAGCCTTTAAACAATTTTCGCT----CCTGAGTCAACATAAGAAAATTCATAC  1337
            |||||||.||||||||||.||||||||.||   |.||.|| ||    |||.|.|.|||||||||.|||||||||
Sbjct 1691  ACAAATGCAAAGAATGTGGCAAAGCCTATA---ACTTATC-CTCAACCCTTACTAAACATAAGAGAATTCATAC  1760

Query 1338  TGTAGATAAACCCTANAAATGTAAAGATTGTGACAAAGCCTTTAAACGGTTCTCACACCTGAATAAACATAAGA  1411
            ||.|||.|||||||..|.||||.||||.||||.|||||||||.||..|||.||||..|||.|.|||||||||||
Sbjct 1761  TGGAGAGAAACCCTTCACATGTGAAGAATGTGGCAAAGCCTTCAATTGGTCCTCATCCCTTACTAAACATAAGA  1834

Query 1412  AAATTCATACT---------------------------------------------------------------  1422
            .||||||||||                                                               
Sbjct 1835  TAATTCATACTGGAGAGAAATCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAATCGGCCCTCAACCCTTACT  1908

Query 1423  ------------------------------------  1422
                                                
Sbjct 1909  GTACACAAGCGAATTCATACTGGCAAGGAACATAGT  1944

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