Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14905
Subject:
NR_024174.3
Aligned Length:
2791
Identities:
1150
Gaps:
1637

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTAGCACCGCCTCTTCCGCGTTCTCGGAGGAGCGATCTGCAGGTAGGGGTGCGCGCGACCGCTCCCCGGCGGGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCCAGCGAAGGTTTCCATGTCAGAGGCCGATGGAGAACTGAAGATTGCCACCTACGCACAAAGGCCATTGAGAC  148

Query    1  ----------------------------------------------------------------------ATGG  4
                                                                                  ||||
Sbjct  149  ACTTCGTGTAGCTGGAAGACACCAACTTCCTGACAGGAGCTTTATTTCATTTGGGATTTCAAGTTTACAGATGG  222

Query    5  TATCTTCTCAAAAGTTGGAAAAACCTATAGAGATGGGCAGTAGCGAACCCCTTCCCATCGCAGATGGTGACAGG  78
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TATCTTCTCAAAAGTTGGAAAAACCTATAGAGATGGGCAGTAGCGAACCCCTTCCCATCGCAGATGGTGACAGG  296

Query   79  AGGAGGAAGAAGAAGCGGAGGGGCCGGGCCACTGACTCCTTGCCAGGAAAGTTTGAAGATATGTACAAGCTGAC  152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AGGAGGAAGAAGAAGCGGAGGGGCCGGGCCACTGACTCCTTGCCAGGAAAGTTTGAAGATATGTACAAGCTGAC  370

Query  153  CTCTGAATTGCTTGGAGAGGGAGCCTATGCCAAAGTTCAAGGTGCCGTGAGCCTACAGAATGGCAAAGAGTATG  226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CTCTGAATTGCTTGGAGAGGGAGCCTATGCCAAAGTTCAAGGTGCCGTGAGCCTACAGAATGGCAAAGAGTATG  444

Query  227  CCGTCAAAATCATCGAGAAACAAGCAGGGCACAGTCGGAGTAGGGTGTTTCGAGAGGTGGAGACGCTGTATCAG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CCGTCAAAATCATCGAGAAACAAGCAGGGCACAGTCGGAGTAGGGTGTTTCGAGAGGTGGAGACGCTGTATCAG  518

Query  301  TGTCAGGGAAACAAGAACATTTTGGAGCTGATTGAGTTCTTTGAAGATGACACAAGGTTTTACTTGGTCTTTGA  374
            ||||||||||||||                                                            
Sbjct  519  TGTCAGGGAAACAA------------------------------------------------------------  532

Query  375  GAAATTGCAAGGAGGTTCCATCTTAGCCCACATCCAGAAGCAAAAGCACTTCAATGAGCGAGAAGCCAGCCGAG  448
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  533  --------------GTTCCATCTTAGCCCACATCCAGAAGCAAAAGCACTTCAATGAGCGAGAAGCCAGCCGAG  592

Query  449  TGGTGCGGGACGTTGCTGCTGCCCTTGACTTCCTGCATACCAAAGACAAAGTCTCTCTCTGTCACCTAGGCTGG  522
            |||||||||||||||||||||||||||||||||||||||||||||.||                          
Sbjct  593  TGGTGCGGGACGTTGCTGCTGCCCTTGACTTCCTGCATACCAAAGGCA--------------------------  640

Query  523  AGTGCTATGGCGCCATCAGGGCTCACTGCAGCCCCAACCTCCCTGGGCTCCAGTGATCCTCCCACCTCAGCCTC  596
                                                                                      
Sbjct  641  --------------------------------------------------------------------------  640

Query  597  CCAAGTAGCTGGGACTACANGCATTTGCTCATNGTGATNTGAAACCAAGNAAAATATATTGTGTGAATCTCCAG  670
                                    ||||||||.|||||.||||||||  .||||||||||||||||||||||| 
Sbjct  641  ------------------------TTGCTCATCGTGATCTGAAACCA--GAAAATATATTGTGTGAATCTCCA-  687

Query  671  GAAAAGGTGTCTCCAGTGAAAAATCTGTGACTTTGACTTGGGCAGTGGGATGAAACTGAACAACTCCTTGTACC  744
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  688  GAAAAGGTGTCTCCAGTG-AAAATCTGTGACTTTGACTTGGGCAGTGGGATGAAACTGAACAACTCC-TGTACC  759

Query  745  CCCATAACCACACCAGAGCTGACCACCCCATGTGGCTCTGCAGAATACATGGCCCCTGGAGGTAGTGGAGGTCT  818
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  760  CCCATAACCACACCAGAGCTGACCACCCCATGTGGCTCTGCAGAATACATGGCCCCT-GAGGTAGTGGAGGTCT  832

Query  819  TCACGGACCAGGCCACATTCTACGACAAGCGCTGTGACCTGTGGAGCCTGGGCGTGGTCCTCTACATCATGCTG  892
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  833  TCACGGACCAGGCCACATTCTACGACAAGCGCTGTGACCTGTGGAGCCTGGGCGTGGTCCTCTACATCATGCTG  906

Query  893  AGTGGCTACCCACCCTTCGTGGGTCACTGCGGGGCCGACTGTGGCTGGGACCGGGGCGAGGTCTGCAGGGTGTG  966
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  907  AGTGGCTACCCACCCTTCGTGGGTCACTGCGGGGCCGACTGTGGCTGGGACCGGGGCGAGGTCTGCAGGGTGTG  980

Query  967  CCAGAACAAGCTGTTTGAAAGCATCCAGGAAGGCAAGTATGAGTTTCCTGACAAGGACTGGGCACACATCTCCA  1040
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  981  CCAGAACAAGCTGTTTGAAAGCATCCAGGAAGGCAAGTATGAGTTTCCTGACAAGGACTGGGCACACATCTCCA  1054

Query 1041  GTGAAGCCAAAGACCTCATCTCCAAGCTCCTGGTGCGAGATGCAAAGCAGAGACTTAGCGCCGCCCAAGTTCTG  1114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055  GTGAAGCCAAAGACCTCATCTCCAAGCTCCTGGTGCGAGATGCAAAGCAGAGACTTAGCGCCGCCCAAGTTCTG  1128

Query 1115  CAGCACCCATGGGTGCAGGGGCAAGCTCCAGAAAAGGGACTCCCCACGCCGCAAGTCCTCCAGAGGAACAGCAG  1188
            ||||||||||||||||||||                                            ||||||||||
Sbjct 1129  CAGCACCCATGGGTGCAGGG--------------------------------------------GGAACAGCAG  1158

Query 1189  CACAATGGACCTGACGCTCTTCGCAGCTGAGGCCATCGCCCTTAACCGCCAGCTATCTCAGCACGAAGAGAACG  1262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159  CACAATGGACCTGACGCTCTTCGCAGCTGAGGCCATCGCCCTTAACCGCCAGCTATCTCAGCACGAAGAGAACG  1232

Query 1263  AACTAGCAGAGGAGCCAGAGGCACTAGCTGATGGCCTCTGCTCCATGAAGCTTTCCCCTCCCTGCAAGTCACGC  1336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233  AACTAGCAGAGGAGCCAGAGGCACTAGCTGATGGCCTCTGCTCCATGAAGCTTTCCCCTCCCTGCAAGTCACGC  1306

Query 1337  CTGGCCCGGAGACGGGCCCTGGCCCAGGCAGGCCGTGGTGAAGACAGGAGCCCGCCCACAGCACTC--------  1402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct 1307  CTGGCCCGGAGACGGGCCCTGGCCCAGGCAGGCCGTGGTGAAGACAGGAGCCCGCCCACAGCACTCTGAAATGC  1380

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1381  TCCAGTCACACCTTATAGGCCCTAGGCCTGGCCAGGCATTGTCCCCTGGAAACCTGTGTGGCTAAAGTCTGCTG  1454

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1455  AGCAGGCAGCAGCCTCTGCTCTGTGGCTCCATTCAGGCTTTTTCATCTACGAAGGCCCTGAGGTTCCCATCAAC  1528

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1529  CCCCATTTCCCTAGGGTCCTGGAGGAAAAAGCTTTTTCCAAAGGGGTTGTCTTTGAAAAGGAAAGCAATCACTT  1602

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1603  CTCACTTTGCATAATTGCCTGCAGCAGGAACATCTCTTCACTGGGCTCCACCTGCTCACCCGCCTGCAGATCTG  1676

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1677  GGATCCAGCCTGCTCTCACCGCTGTAGCTGTGGCGGCTGGGGCTGCAGCCTGCAGGGAGAAGCAAGAAGCATCA  1750

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1751  GTTGACAGAGGCTGCCGACACGTGCCTCTTCCCTCTCTTCTCTGTCACCCTCCTCTGGCGGTCCTTCCACCTTC  1824

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1825  CTCTGTCCTCCGGATGTCCTCTTTGCCCGTCTTCTCCCTTGGCTGAGCAAAGCCATCCCCTCAATTCAGGGAAG  1898

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1899  GGCAAGGAGCCTTCCTCATTCAGGAAATCAAATCAGTCTTCCGGTCTGCAGCACGGAAAAGCACATAATCTTTC  1972

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1973  TTTGCTGTGACTGAAATGTATCCCTCGTTTATCATCCCCTTTGTTTGTGATTGCTGCTAAAGTCAGTAGTATCG  2046

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2047  TTTTTTTAAAAAAAAAGTTTGGTGTTTTTAACCATGCTGTTCCAGCAAAGATGATACCTTAAACTCCCACTGCA  2120

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2121  AGCCCATGAACTTCCCAGAGAGTGGAACGGCTTGCTCTTCTTTCTAGAATGTCCATGCACTTGGGTTTTAATCA  2194

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2195  GCAGTTCCCTATTATTCTGATTTTAAGCTGTTCCTGTGATGAACTTAGAGACAGCATCGGTGTCTGCTGCTGTG  2268

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2269  TCCCCAGGTCTTGTGTGGGTGGCACAGATCTGGGCAGTTAGATAGTGCTCTGTGCCTAAGGTGAAGCCACACTA  2342

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2343  GGGTGAAGCCTCACTTCCCTGTTTGAGCAATGCAGTGCCTGCTGCCCGTGTGCATGAAGGTACAGCCATTCAGA  2416

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2417  TAAGTGGAACTATTGAGTTACATAAAGAAAATAGATTTGCATTTGTCAGGCAGACGTTTATACAACACCACGGT  2490

Query 1403  -----------------------------------------------------  1402
                                                                 
Sbjct 2491  GCTTTTATACATTGTGCTTATTTTAATAAAACTGAAATTCTATGTGTGGCCTA  2543

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