Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14905
- Subject:
- NR_024176.3
- Aligned Length:
- 2892
- Identities:
- 1194
- Gaps:
- 1694
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTAGCACCGCCTCTTCCGCGTTCTCGGAGGAGCGATCTGCAGGTAGGGGTGCGCGCGACCGCTCCCCGGCGGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCCAGCGAAGGTTTCCATGTCAGAGGCCGATGGAGAACTGAAGATTGCCACCTACGCACAAAGGCCATTGAGAC 148
Query 1 ----------------------------------------------------------------------ATGG 4
||||
Sbjct 149 ACTTCGTGTAGCTGGAAGACACCAACTTCCTGACAGGAGCTTTATTTCATTTGGGATTTCAAGTTTACAGATGG 222
Query 5 TATCTTCTCAAAAGTTGGAAAAACCTAT---------------------------------------------- 32
||||||||||||||||||||||||||||
Sbjct 223 TATCTTCTCAAAAGTTGGAAAAACCTATAGTTTCAGAAACAACTCTCCAAGTTCCATTTCCAAGGAAAGTCTTA 296
Query 33 -------------------------------------------------------AGAGATGGGCAGTAGCGAA 51
|||||||||||||||||||
Sbjct 297 ACCATTTGTCCCTTCTGGCGTACCCTCTTTCATTGAAATCCATGCAGAATATACCAGAGATGGGCAGTAGCGAA 370
Query 52 CCCCTTCCCATCGCAGATGGTGACAGGAGGAGGAAGAAGAAGCGGAGGGGCCGGGCCACTGACTCCTTGCCAGG 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CCCCTTCCCATCGCAGATGGTGACAGGAGGAGGAAGAAGAAGCGGAGGGGCCGGGCCACTGACTCCTTGCCAGG 444
Query 126 AAAGTTTGAAGATATGTACAAGCTGACCTCTGAATTGCTTGGAGAGGGAGCCTATGCCAAAGTTCAAGGTGCCG 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AAAGTTTGAAGATATGTACAAGCTGACCTCTGAATTGCTTGGAGAGGGAGCCTATGCCAAAGTTCAAGGTGCCG 518
Query 200 TGAGCCTACAGAATGGCAAAGAGTATGCCGTCAAAATCATCGAGAAACAAGCAGGGCACAGTCGGAGTAGGGTG 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGAGCCTACAGAATGGCAAAGAGTATGCCGTCAAAATCATCGAGAAACAAGCAGGGCACAGTCGGAGTAGGGTG 592
Query 274 TTTCGAGAGGTGGAGACGCTGTATCAGTGTCAGGGAAACAAGAACATTTTGGAGCTGATTGAGTTCTTTGAAGA 347
|||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTTCGAGAGGTGGAGACGCTGTATCAGTGTCAGGGAAACAA--------------------------------- 633
Query 348 TGACACAAGGTTTTACTTGGTCTTTGAGAAATTGCAAGGAGGTTCCATCTTAGCCCACATCCAGAAGCAAAAGC 421
|||||||||||||||||||||||||||||||||
Sbjct 634 -----------------------------------------GTTCCATCTTAGCCCACATCCAGAAGCAAAAGC 666
Query 422 ACTTCAATGAGCGAGAAGCCAGCCGAGTGGTGCGGGACGTTGCTGCTGCCCTTGACTTCCTGCATACCAAAGAC 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 667 ACTTCAATGAGCGAGAAGCCAGCCGAGTGGTGCGGGACGTTGCTGCTGCCCTTGACTTCCTGCATACCAAAGGC 740
Query 496 AAAGTCTCTCTCTGTCACCTAGGCTGGAGTGCTATGGCGCCATCAGGGCTCACTGCAGCCCCAACCTCCCTGGG 569
|
Sbjct 741 A------------------------------------------------------------------------- 741
Query 570 CTCCAGTGATCCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACANGCATTTGCTCATNGTGATNTGAAACCA 643
||||||||.|||||.||||||||
Sbjct 742 ---------------------------------------------------TTGCTCATCGTGATCTGAAACCA 764
Query 644 AGNAAAATATATTGTGTGAATCTCCAGGAAAAGGTGTCTCCAGTGAAAAATCTGTGACTTTGACTTGGGCAGTG 717
.||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 765 --GAAAATATATTGTGTGAATCTCCA-GAAAAGGTGTCTCCAGTG-AAAATCTGTGACTTTGACTTGGGCAGTG 834
Query 718 GGATGAAACTGAACAACTCCTTGTACCCCCATAACCACACCAGAGCTGACCACCCCATGTGGCTCTGCAGAATA 791
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GGATGAAACTGAACAACTCC-TGTACCCCCATAACCACACCAGAGCTGACCACCCCATGTGGCTCTGCAGAATA 907
Query 792 CATGGCCCCTGGAGGTAGTGGAGGTCTTCACGGACCAGGCCACATTCTACGACAAGCGCTGTGACCTGTGGAGC 865
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 CATGGCCCCT-GAGGTAGTGGAGGTCTTCACGGACCAGGCCACATTCTACGACAAGCGCTGTGACCTGTGGAGC 980
Query 866 CTGGGCGTGGTCCTCTACATCATGCTGAGTGGCTACCCACCCTTCGTGGGTCACTGCGGGGCCGACTGTGGCTG 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 CTGGGCGTGGTCCTCTACATCATGCTGAGTGGCTACCCACCCTTCGTGGGTCACTGCGGGGCCGACTGTGGCTG 1054
Query 940 GGACCGGGGCGAGGTCTGCAGGGTGTGCCAGAACAAGCTGTTTGAAAGCATCCAGGAAGGCAAGTATGAGTTTC 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 GGACCGGGGCGAGGTCTGCAGGGTGTGCCAGAACAAGCTGTTTGAAAGCATCCAGGAAGGCAAGTATGAGTTTC 1128
Query 1014 CTGACAAGGACTGGGCACACATCTCCAGTGAAGCCAAAGACCTCATCTCCAAGCTCCTGGTGCGAGATGCAAAG 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 CTGACAAGGACTGGGCACACATCTCCAGTGAAGCCAAAGACCTCATCTCCAAGCTCCTGGTGCGAGATGCAAAG 1202
Query 1088 CAGAGACTTAGCGCCGCCCAAGTTCTGCAGCACCCATGGGTGCAGGGGCAAGCTCCAGAAAAGGGACTCCCCAC 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 CAGAGACTTAGCGCCGCCCAAGTTCTGCAGCACCCATGGGTGCAGGGGCAAGCTCCAGAAAAGGGACTCCCCAC 1276
Query 1162 GCCGCAAGTCCTCCAGAGGAACAGCAGCACAATGGACCTGACGCTCTTCGCAGCTGAGGCCATCGCCCTTAACC 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 GCCGCAAGTCCTCCAGAGGAACAGCAGCACAATGGACCTGACGCTCTTCGCAGCTGAGGCCATCGCCCTTAACC 1350
Query 1236 GCCAGCTATCTCAGCACGAAGAGAACGAACTAGCAGAGGAGCCAGAGGCACTAGCTGATGGCCTCTGCTCCATG 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 GCCAGCTATCTCAGCACGAAGAGAACGAACTAGCAGAGGAGCCAGAGGCACTAGCTGATGGCCTCTGCTCCATG 1424
Query 1310 AAGCTTTCCCCTCCCTGCAAGTCACGCCTGGCCCGGAGACGGGCCCTGGCCCAGGCAGGCCGTGGTGAAGACAG 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 AAGCTTTCCCCTCCCTGCAAGTCACGCCTGGCCCGGAGACGGGCCCTGGCCCAGGCAGGCCGTGGTGAAGACAG 1498
Query 1384 GAGCCCGCCCACAGCACTC------------------------------------------------------- 1402
|||||||||||||||||||
Sbjct 1499 GAGCCCGCCCACAGCACTCTGAAATGCTCCAGTCACACCTTATAGGCCCTAGGCCTGGCCAGGCATTGTCCCCT 1572
Query 1403 -------------------------------------------------------------------------- 1402
Sbjct 1573 GGAAACCTGTGTGGCTAAAGTCTGCTGAGCAGGCAGCAGCCTCTGCTCTGTGGCTCCATTCAGGCTTTTTCATC 1646
Query 1403 -------------------------------------------------------------------------- 1402
Sbjct 1647 TACGAAGGCCCTGAGGTTCCCATCAACCCCCATTTCCCTAGGGTCCTGGAGGAAAAAGCTTTTTCCAAAGGGGT 1720
Query 1403 -------------------------------------------------------------------------- 1402
Sbjct 1721 TGTCTTTGAAAAGGAAAGCAATCACTTCTCACTTTGCATAATTGCCTGCAGCAGGAACATCTCTTCACTGGGCT 1794
Query 1403 -------------------------------------------------------------------------- 1402
Sbjct 1795 CCACCTGCTCACCCGCCTGCAGATCTGGGATCCAGCCTGCTCTCACCGCTGTAGCTGTGGCGGCTGGGGCTGCA 1868
Query 1403 -------------------------------------------------------------------------- 1402
Sbjct 1869 GCCTGCAGGGAGAAGCAAGAAGCATCAGTTGACAGAGGCTGCCGACACGTGCCTCTTCCCTCTCTTCTCTGTCA 1942
Query 1403 -------------------------------------------------------------------------- 1402
Sbjct 1943 CCCTCCTCTGGCGGTCCTTCCACCTTCCTCTGTCCTCCGGATGTCCTCTTTGCCCGTCTTCTCCCTTGGCTGAG 2016
Query 1403 -------------------------------------------------------------------------- 1402
Sbjct 2017 CAAAGCCATCCCCTCAATTCAGGGAAGGGCAAGGAGCCTTCCTCATTCAGGAAATCAAATCAGTCTTCCGGTCT 2090
Query 1403 -------------------------------------------------------------------------- 1402
Sbjct 2091 GCAGCACGGAAAAGCACATAATCTTTCTTTGCTGTGACTGAAATGTATCCCTCGTTTATCATCCCCTTTGTTTG 2164
Query 1403 -------------------------------------------------------------------------- 1402
Sbjct 2165 TGATTGCTGCTAAAGTCAGTAGTATCGTTTTTTTAAAAAAAAAGTTTGGTGTTTTTAACCATGCTGTTCCAGCA 2238
Query 1403 -------------------------------------------------------------------------- 1402
Sbjct 2239 AAGATGATACCTTAAACTCCCACTGCAAGCCCATGAACTTCCCAGAGAGTGGAACGGCTTGCTCTTCTTTCTAG 2312
Query 1403 -------------------------------------------------------------------------- 1402
Sbjct 2313 AATGTCCATGCACTTGGGTTTTAATCAGCAGTTCCCTATTATTCTGATTTTAAGCTGTTCCTGTGATGAACTTA 2386
Query 1403 -------------------------------------------------------------------------- 1402
Sbjct 2387 GAGACAGCATCGGTGTCTGCTGCTGTGTCCCCAGGTCTTGTGTGGGTGGCACAGATCTGGGCAGTTAGATAGTG 2460
Query 1403 -------------------------------------------------------------------------- 1402
Sbjct 2461 CTCTGTGCCTAAGGTGAAGCCACACTAGGGTGAAGCCTCACTTCCCTGTTTGAGCAATGCAGTGCCTGCTGCCC 2534
Query 1403 -------------------------------------------------------------------------- 1402
Sbjct 2535 GTGTGCATGAAGGTACAGCCATTCAGATAAGTGGAACTATTGAGTTACATAAAGAAAATAGATTTGCATTTGTC 2608
Query 1403 -------------------------------------------------------------------------- 1402
Sbjct 2609 AGGCAGACGTTTATACAACACCACGGTGCTTTTATACATTGTGCTTATTTTAATAAAACTGAAATTCTATGTGT 2682
Query 1403 ------ 1402
Sbjct 2683 GGCCTA 2688
