Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14905
Subject:
NR_024176.3
Aligned Length:
2892
Identities:
1194
Gaps:
1694

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTAGCACCGCCTCTTCCGCGTTCTCGGAGGAGCGATCTGCAGGTAGGGGTGCGCGCGACCGCTCCCCGGCGGGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCCAGCGAAGGTTTCCATGTCAGAGGCCGATGGAGAACTGAAGATTGCCACCTACGCACAAAGGCCATTGAGAC  148

Query    1  ----------------------------------------------------------------------ATGG  4
                                                                                  ||||
Sbjct  149  ACTTCGTGTAGCTGGAAGACACCAACTTCCTGACAGGAGCTTTATTTCATTTGGGATTTCAAGTTTACAGATGG  222

Query    5  TATCTTCTCAAAAGTTGGAAAAACCTAT----------------------------------------------  32
            ||||||||||||||||||||||||||||                                              
Sbjct  223  TATCTTCTCAAAAGTTGGAAAAACCTATAGTTTCAGAAACAACTCTCCAAGTTCCATTTCCAAGGAAAGTCTTA  296

Query   33  -------------------------------------------------------AGAGATGGGCAGTAGCGAA  51
                                                                   |||||||||||||||||||
Sbjct  297  ACCATTTGTCCCTTCTGGCGTACCCTCTTTCATTGAAATCCATGCAGAATATACCAGAGATGGGCAGTAGCGAA  370

Query   52  CCCCTTCCCATCGCAGATGGTGACAGGAGGAGGAAGAAGAAGCGGAGGGGCCGGGCCACTGACTCCTTGCCAGG  125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCCCTTCCCATCGCAGATGGTGACAGGAGGAGGAAGAAGAAGCGGAGGGGCCGGGCCACTGACTCCTTGCCAGG  444

Query  126  AAAGTTTGAAGATATGTACAAGCTGACCTCTGAATTGCTTGGAGAGGGAGCCTATGCCAAAGTTCAAGGTGCCG  199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAAGTTTGAAGATATGTACAAGCTGACCTCTGAATTGCTTGGAGAGGGAGCCTATGCCAAAGTTCAAGGTGCCG  518

Query  200  TGAGCCTACAGAATGGCAAAGAGTATGCCGTCAAAATCATCGAGAAACAAGCAGGGCACAGTCGGAGTAGGGTG  273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGAGCCTACAGAATGGCAAAGAGTATGCCGTCAAAATCATCGAGAAACAAGCAGGGCACAGTCGGAGTAGGGTG  592

Query  274  TTTCGAGAGGTGGAGACGCTGTATCAGTGTCAGGGAAACAAGAACATTTTGGAGCTGATTGAGTTCTTTGAAGA  347
            |||||||||||||||||||||||||||||||||||||||||                                 
Sbjct  593  TTTCGAGAGGTGGAGACGCTGTATCAGTGTCAGGGAAACAA---------------------------------  633

Query  348  TGACACAAGGTTTTACTTGGTCTTTGAGAAATTGCAAGGAGGTTCCATCTTAGCCCACATCCAGAAGCAAAAGC  421
                                                     |||||||||||||||||||||||||||||||||
Sbjct  634  -----------------------------------------GTTCCATCTTAGCCCACATCCAGAAGCAAAAGC  666

Query  422  ACTTCAATGAGCGAGAAGCCAGCCGAGTGGTGCGGGACGTTGCTGCTGCCCTTGACTTCCTGCATACCAAAGAC  495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct  667  ACTTCAATGAGCGAGAAGCCAGCCGAGTGGTGCGGGACGTTGCTGCTGCCCTTGACTTCCTGCATACCAAAGGC  740

Query  496  AAAGTCTCTCTCTGTCACCTAGGCTGGAGTGCTATGGCGCCATCAGGGCTCACTGCAGCCCCAACCTCCCTGGG  569
            |                                                                         
Sbjct  741  A-------------------------------------------------------------------------  741

Query  570  CTCCAGTGATCCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACANGCATTTGCTCATNGTGATNTGAAACCA  643
                                                               ||||||||.|||||.||||||||
Sbjct  742  ---------------------------------------------------TTGCTCATCGTGATCTGAAACCA  764

Query  644  AGNAAAATATATTGTGTGAATCTCCAGGAAAAGGTGTCTCCAGTGAAAAATCTGTGACTTTGACTTGGGCAGTG  717
              .||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  765  --GAAAATATATTGTGTGAATCTCCA-GAAAAGGTGTCTCCAGTG-AAAATCTGTGACTTTGACTTGGGCAGTG  834

Query  718  GGATGAAACTGAACAACTCCTTGTACCCCCATAACCACACCAGAGCTGACCACCCCATGTGGCTCTGCAGAATA  791
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  835  GGATGAAACTGAACAACTCC-TGTACCCCCATAACCACACCAGAGCTGACCACCCCATGTGGCTCTGCAGAATA  907

Query  792  CATGGCCCCTGGAGGTAGTGGAGGTCTTCACGGACCAGGCCACATTCTACGACAAGCGCTGTGACCTGTGGAGC  865
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  908  CATGGCCCCT-GAGGTAGTGGAGGTCTTCACGGACCAGGCCACATTCTACGACAAGCGCTGTGACCTGTGGAGC  980

Query  866  CTGGGCGTGGTCCTCTACATCATGCTGAGTGGCTACCCACCCTTCGTGGGTCACTGCGGGGCCGACTGTGGCTG  939
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  981  CTGGGCGTGGTCCTCTACATCATGCTGAGTGGCTACCCACCCTTCGTGGGTCACTGCGGGGCCGACTGTGGCTG  1054

Query  940  GGACCGGGGCGAGGTCTGCAGGGTGTGCCAGAACAAGCTGTTTGAAAGCATCCAGGAAGGCAAGTATGAGTTTC  1013
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055  GGACCGGGGCGAGGTCTGCAGGGTGTGCCAGAACAAGCTGTTTGAAAGCATCCAGGAAGGCAAGTATGAGTTTC  1128

Query 1014  CTGACAAGGACTGGGCACACATCTCCAGTGAAGCCAAAGACCTCATCTCCAAGCTCCTGGTGCGAGATGCAAAG  1087
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129  CTGACAAGGACTGGGCACACATCTCCAGTGAAGCCAAAGACCTCATCTCCAAGCTCCTGGTGCGAGATGCAAAG  1202

Query 1088  CAGAGACTTAGCGCCGCCCAAGTTCTGCAGCACCCATGGGTGCAGGGGCAAGCTCCAGAAAAGGGACTCCCCAC  1161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203  CAGAGACTTAGCGCCGCCCAAGTTCTGCAGCACCCATGGGTGCAGGGGCAAGCTCCAGAAAAGGGACTCCCCAC  1276

Query 1162  GCCGCAAGTCCTCCAGAGGAACAGCAGCACAATGGACCTGACGCTCTTCGCAGCTGAGGCCATCGCCCTTAACC  1235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277  GCCGCAAGTCCTCCAGAGGAACAGCAGCACAATGGACCTGACGCTCTTCGCAGCTGAGGCCATCGCCCTTAACC  1350

Query 1236  GCCAGCTATCTCAGCACGAAGAGAACGAACTAGCAGAGGAGCCAGAGGCACTAGCTGATGGCCTCTGCTCCATG  1309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351  GCCAGCTATCTCAGCACGAAGAGAACGAACTAGCAGAGGAGCCAGAGGCACTAGCTGATGGCCTCTGCTCCATG  1424

Query 1310  AAGCTTTCCCCTCCCTGCAAGTCACGCCTGGCCCGGAGACGGGCCCTGGCCCAGGCAGGCCGTGGTGAAGACAG  1383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425  AAGCTTTCCCCTCCCTGCAAGTCACGCCTGGCCCGGAGACGGGCCCTGGCCCAGGCAGGCCGTGGTGAAGACAG  1498

Query 1384  GAGCCCGCCCACAGCACTC-------------------------------------------------------  1402
            |||||||||||||||||||                                                       
Sbjct 1499  GAGCCCGCCCACAGCACTCTGAAATGCTCCAGTCACACCTTATAGGCCCTAGGCCTGGCCAGGCATTGTCCCCT  1572

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1573  GGAAACCTGTGTGGCTAAAGTCTGCTGAGCAGGCAGCAGCCTCTGCTCTGTGGCTCCATTCAGGCTTTTTCATC  1646

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1647  TACGAAGGCCCTGAGGTTCCCATCAACCCCCATTTCCCTAGGGTCCTGGAGGAAAAAGCTTTTTCCAAAGGGGT  1720

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1721  TGTCTTTGAAAAGGAAAGCAATCACTTCTCACTTTGCATAATTGCCTGCAGCAGGAACATCTCTTCACTGGGCT  1794

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1795  CCACCTGCTCACCCGCCTGCAGATCTGGGATCCAGCCTGCTCTCACCGCTGTAGCTGTGGCGGCTGGGGCTGCA  1868

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1869  GCCTGCAGGGAGAAGCAAGAAGCATCAGTTGACAGAGGCTGCCGACACGTGCCTCTTCCCTCTCTTCTCTGTCA  1942

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1943  CCCTCCTCTGGCGGTCCTTCCACCTTCCTCTGTCCTCCGGATGTCCTCTTTGCCCGTCTTCTCCCTTGGCTGAG  2016

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2017  CAAAGCCATCCCCTCAATTCAGGGAAGGGCAAGGAGCCTTCCTCATTCAGGAAATCAAATCAGTCTTCCGGTCT  2090

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2091  GCAGCACGGAAAAGCACATAATCTTTCTTTGCTGTGACTGAAATGTATCCCTCGTTTATCATCCCCTTTGTTTG  2164

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2165  TGATTGCTGCTAAAGTCAGTAGTATCGTTTTTTTAAAAAAAAAGTTTGGTGTTTTTAACCATGCTGTTCCAGCA  2238

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2239  AAGATGATACCTTAAACTCCCACTGCAAGCCCATGAACTTCCCAGAGAGTGGAACGGCTTGCTCTTCTTTCTAG  2312

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2313  AATGTCCATGCACTTGGGTTTTAATCAGCAGTTCCCTATTATTCTGATTTTAAGCTGTTCCTGTGATGAACTTA  2386

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2387  GAGACAGCATCGGTGTCTGCTGCTGTGTCCCCAGGTCTTGTGTGGGTGGCACAGATCTGGGCAGTTAGATAGTG  2460

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2461  CTCTGTGCCTAAGGTGAAGCCACACTAGGGTGAAGCCTCACTTCCCTGTTTGAGCAATGCAGTGCCTGCTGCCC  2534

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2535  GTGTGCATGAAGGTACAGCCATTCAGATAAGTGGAACTATTGAGTTACATAAAGAAAATAGATTTGCATTTGTC  2608

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2609  AGGCAGACGTTTATACAACACCACGGTGCTTTTATACATTGTGCTTATTTTAATAAAACTGAAATTCTATGTGT  2682

Query 1403  ------  1402
                  
Sbjct 2683  GGCCTA  2688

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