Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14905
Subject:
NR_146512.2
Aligned Length:
2780
Identities:
1224
Gaps:
1552

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTAGCACCGCCTCTTCCGCGTTCTCGGAGGAGCGATCTGCAGGTTTCCATGTCAGAGGCCGATGGAGAACTGAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GATTGCCACCTACGCACAAAGGCCATTGAGACACTTCGTGTAGCTGGAAGACACCAACTTCCTGACAGGAGCTT  148

Query    1  ----------------------------ATGGTATCTTCTCAAAAGTTGGAAAAACCTATAGAGATGGGCAGTA  46
                                        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TATTTCATTTGGGATTTCAAGTTTACAGATGGTATCTTCTCAAAAGTTGGAAAAACCTATAGAGATGGGCAGTA  222

Query   47  GCGAACCCCTTCCCATCGCAGATGGTGACAGGAGGAGGAAGAAGAAGCGGAGGGGCCGGGCCACTGACTCCTTG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GCGAACCCCTTCCCATCGCAGATGGTGACAGGAGGAGGAAGAAGAAGCGGAGGGGCCGGGCCACTGACTCCTTG  296

Query  121  CCAGGAAAGTTTGAAGATATGTACAAGCTGACCTCTGAATTGCTTGGAGAGGGAGCCTATGCCAAAGTTCAAGG  194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CCAGGAAAGTTTGAAGATATGTACAAGCTGACCTCTGAATTGCTTGGAGAGGGAGCCTATGCCAAAGTTCAAGG  370

Query  195  TGCCGTGAGCCTACAGAATGGCAAAGAGTATGCCGTCAAAATCATCGAGAAACAAGCAGGGCACAGTCGGAGTA  268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TGCCGTGAGCCTACAGAATGGCAAAGAGTATGCCGTCAAAATCATCGAGAAACAAGCAGGGCACAGTCGGAGTA  444

Query  269  GGGTGTTTCGAGAGGTGGAGACGCTGTATCAGTGTCAGGGAAACAAGAACATTTTGGAGCTGATTGAGTTCTTT  342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GGGTGTTTCGAGAGGTGGAGACGCTGTATCAGTGTCAGGGAAACAAGAACATTTTGGAGCTGATTGAGTTCTTT  518

Query  343  GAAGATGACACAAGGTTTTACTTGGTCTTTGAGAAATTGCAAGGAGGTTCCATCTTAGCCCACATCCAGAAGCA  416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GAAGATGACACAAGGTTTTACTTGGTCTTTGAGAAATTGCAAGGAGGTTCCATCTTAGCCCACATCCAGAAGCA  592

Query  417  AAAGCACTTCAATGAGCGAGAAGCCAGCCGAGTGGTGCGGGACGTTGCTGCTGCCCTTGACTTCCTGCATACCA  490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AAAGCACTTCAATGAGCGAGAAGCCAGCCGAGTGGTGCGGGACGTTGCTGCTGCCCTTGACTTCCTGCATACCA  666

Query  491  AAGACAAAGTCTCTCTCTGTCACCTAGGCTGGAGTGCTATGGCGCCATCAGGGCTCACTGCAGCCCCAACCTCC  564
            |||.||                                                                    
Sbjct  667  AAGGCA--------------------------------------------------------------------  672

Query  565  CTGGGCTCCAGTGATCCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACANGCATTTGCTCATNGTGATNTGA  638
                                                                    ||||||||.|||||.|||
Sbjct  673  --------------------------------------------------------TTGCTCATCGTGATCTGA  690

Query  639  AACCAAGNAAAATATATTGTGTGAATCTCCAGGAAAAGGTGTCTCCAGTGAAAAATCTGTGACTTTGACTTGGG  712
            |||||  .||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct  691  AACCA--GAAAATATATTGTGTGAATCTCCA-GAAAAGGTGTCTCCAGTG-AAAATCTGTGACTTTGACTTGGG  760

Query  713  CAGTGGGATGAAACTGAACAACTCCTTGTACCCCCATAACCACACCAGAGCTGACCACCCCATGTGGCTCTGCA  786
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  761  CAGTGGGATGAAACTGAACAACTCC-TGTACCCCCATAACCACACCAGAGCTGACCACCCCATGTGGCTCTGCA  833

Query  787  GAATACATGGCCCCTGGAGGTAGTGGAGGTCTTCACGGACCAGGCCACATTCTACGACAAGCGCTGTGACCTGT  860
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  834  GAATACATGGCCCCT-GAGGTAGTGGAGGTCTTCACGGACCAGGCCACATTCTACGACAAGCGCTGTGACCTGT  906

Query  861  GGAGCCTGGGCGTGGTCCTCTACATCATGCTGAGTGGCTACCCACCCTTCGTGGGTCACTGCGGGGCCGACTGT  934
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  907  GGAGCCTGGGCGTGGTCCTCTACATCATGCTGAGTGGCTACCCACCCTTCGTGGGTCACTGCGGGGCCGACTGT  980

Query  935  GGCTGGGACCGGGGCGAGGTCTGCAGGGTGTGCC-------------------------------AGAACAAGC  977
            ||||||||||||||||||||||||||||||||||                               |||||||||
Sbjct  981  GGCTGGGACCGGGGCGAGGTCTGCAGGGTGTGCCAGTGTGGCCTCAGGAGGAATCTTTTGTACCTAGAACAAGC  1054

Query  978  TGTTTGAAAGCATCCAGGAAGGCAAGTATGAGTTTCCTGACAAGGACTGGGCACACATCTCCAGTGAAGCCAAA  1051
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055  TGTTTGAAAGCATCCAGGAAGGCAAGTATGAGTTTCCTGACAAGGACTGGGCACACATCTCCAGTGAAGCCAAA  1128

Query 1052  GACCTCATCTCCAAGCTCCTGGTGCGAGATGCAAAGCAGAGACTTAGCGCCGCCCAAGTTCTGCAGCACCCATG  1125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129  GACCTCATCTCCAAGCTCCTGGTGCGAGATGCAAAGCAGAGACTTAGCGCCGCCCAAGTTCTGCAGCACCCATG  1202

Query 1126  GGTGCAGGGGCAAGCTCCAGAAAAGGGACTCCCCACGCCGCAAGTCCTCCAGAGGAACAGCAGCACAATGGACC  1199
            |||||||||                                            |||||||||||||||||||||
Sbjct 1203  GGTGCAGGG--------------------------------------------GGAACAGCAGCACAATGGACC  1232

Query 1200  TGACGCTCTTCGCAGCTGAGGCCATCGCCCTTAACCGCCAGCTATCTCAGCACGAAGAGAACGAACTAGCAGAG  1273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233  TGACGCTCTTCGCAGCTGAGGCCATCGCCCTTAACCGCCAGCTATCTCAGCACGAAGAGAACGAACTAGCAGAG  1306

Query 1274  GAGCCAGAGGCACTAGCTGATGGCCTCTGCTCCATGAAGCTTTCCCCTCCCTGCAAGTCACGCCTGGCCCGGAG  1347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307  GAGCCAGAGGCACTAGCTGATGGCCTCTGCTCCATGAAGCTTTCCCCTCCCTGCAAGTCACGCCTGGCCCGGAG  1380

Query 1348  ACGGGCCCTGGCCCAGGCAGGCCGTGGTGAAGACAGGAGCCCGCCCACAGCACTC-------------------  1402
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
Sbjct 1381  ACGGGCCCTGGCCCAGGCAGGCCGTGGTGAAGACAGGAGCCCGCCCACAGCACTCTGAAATGCTCCAGTCACAC  1454

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1455  CTTATAGGCCCTAGGCCTGGCCAGGCATTGTCCCCTGGAAACCTGTGTGGCTAAAGTCTGCTGAGCAGGCAGCA  1528

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1529  GCCTCTGCTCTGTGGCTCCATTCAGGCTTTTTCATCTACGAAGGCCCTGAGGTTCCCATCAACCCCCATTTCCC  1602

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1603  TAGGGTCCTGGAGGAAAAAGCTTTTTCCAAAGGGGTTGTCTTTGAAAAGGAAAGCAATCACTTCTCACTTTGCA  1676

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1677  TAATTGCCTGCAGCAGGAACATCTCTTCACTGGGCTCCACCTGCTCACCCGCCTGCAGATCTGGGATCCAGCCT  1750

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1751  GCTCTCACCGCTGTAGCTGTGGCGGCTGGGGCTGCAGCCTGCAGGGAGAAGCAAGAAGCATCAGTTGACAGAGG  1824

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1825  CTGCCGACACGTGCCTCTTCCCTCTCTTCTCTGTCACCCTCCTCTGGCGGTCCTTCCACCTTCCTCTGTCCTCC  1898

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1899  GGATGTCCTCTTTGCCCGTCTTCTCCCTTGGCTGAGCAAAGCCATCCCCTCAATTCAGGGAAGGGCAAGGAGCC  1972

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 1973  TTCCTCATTCAGGAAATCAAATCAGTCTTCCGGTCTGCAGCACGGAAAAGCACATAATCTTTCTTTGCTGTGAC  2046

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2047  TGAAATGTATCCCTCGTTTATCATCCCCTTTGTTTGTGATTGCTGCTAAAGTCAGTAGTATCGTTTTTTTAAAA  2120

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2121  AAAAAGTTTGGTGTTTTTAACCATGCTGTTCCAGCAAAGATGATACCTTAAACTCCCACTGCAAGCCCATGAAC  2194

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2195  TTCCCAGAGAGTGGAACGGCTTGCTCTTCTTTCTAGAATGTCCATGCACTTGGGTTTTAATCAGCAGTTCCCTA  2268

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2269  TTATTCTGATTTTAAGCTGTTCCTGTGATGAACTTAGAGACAGCATCGGTGTCTGCTGCTGTGTCCCCAGGTCT  2342

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2343  TGTGTGGGTGGCACAGATCTGGGCAGTTAGATAGTGCTCTGTGCCTAAGGTGAAGCCACACTAGGGTGAAGCCT  2416

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2417  CACTTCCCTGTTTGAGCAATGCAGTGCCTGCTGCCCGTGTGCATGAAGGTACAGCCATTCAGATAAGTGGAACT  2490

Query 1403  --------------------------------------------------------------------------  1402
                                                                                      
Sbjct 2491  ATTGAGTTACATAAAGAAAATAGATTTGCATTTGTCAGGCAGACGTTTATACAACACCACGGTGCTTTTATACA  2564

Query 1403  ------------------------------------------  1402
                                                      
Sbjct 2565  TTGTGCTTATTTTAATAAAACTGAAATTCTATGTGTGGCCTA  2606

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