Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14982
• Subject: NM_175451.1
• Aligned Length: 1810
• Identities: 1478
• Gaps: 89

Alignment

Query    1  ATGCCCTCGGCCAAACAAAGGGGCTCCAAGGGCGGCCACGGCGCCGCGAGCCCCTCGGAGAAGGGTGCCCACCC  74
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.||||||||
Sbjct    1  ATGCCCTCGGCCAAACAAAGGGGCTCCAAGGGCGGCCACGGCGCCGCGAGCCCCTCGGACAAGGGCGCCCACCC  74

Query   75  GTCGGGCGGCGCGGATGACGTGGCGAAGAAGCCGCCGCCGGCGCCGCAGCAGCCGCCGCCGCCGCCCGCGCCGC  148
            |||||||||||||||||||||||||||||||||||||.|||||||||||||   |||||.|||.||||||||  
Sbjct   75  GTCGGGCGGCGCGGATGACGTGGCGAAGAAGCCGCCGGCGGCGCCGCAGCA---GCCGCAGCCTCCCGCGCC--  143

Query  149  ACCCGCAGCAGCACCCGCAGCAGCACCCGCAGAACCAGGCGCACGGCAAGGGCGGCCACCGCGGCGGCGGCGGC  222
                      ||||||||.|||||||||||||||||||||||||.|   ||||||||||||||||.|       
Sbjct  144  ----------GCACCCGCCGCAGCACCCGCAGAACCAGGCGCACCG---GGGCGGCCACCGCGGCCG-------  197

Query  223  GGCGGCGGCAAGTCCTCCTCCTCCTCCTCCGCCGCCGGCGCCGCAGCAGCCGCCGCCGCCTCGTCCTCGGCGTC  296
                       |||||                           ||||.|||.|||||..|.|||||||.|||||
Sbjct  198  -----------GTCCT---------------------------CAGCCGCCACCGCCAACGCGTCCTCCGCGTC  233

Query  297  CTGCTCGCGCAGGCTCGGCAGGGCGCTCAACTTTCTCTTCTACCTCGCCCTGGTGGCGGCGGCCGCTTTCTCGG  370
            |||||||||||||||.|||.|||.||||||||||||||||||||||.|||||||||||||||||||.|||||||
Sbjct  234  CTGCTCGCGCAGGCTTGGCCGGGTGCTCAACTTTCTCTTCTACCTCTCCCTGGTGGCGGCGGCCGCCTTCTCGG  307

Query  371  GCTGGTGCGTCCACCACGTCCTGGAGGAGGTCCAGCAGGTCCGGCGCAGCCACCAGGACTTCTCCCGGCAGAGG  444
            ||||||..|||||.||||||||||||||||||||||||||||||||..|||||||||||||||||||.||||||
Sbjct  308  GCTGGTATGTCCATCACGTCCTGGAGGAGGTCCAGCAGGTCCGGCGTGGCCACCAGGACTTCTCCCGTCAGAGG  381

Query  445  GAGGAGCTGGGCCAGGGCTTGCAGGGCGTCGAGCAGAAGGTGCAGTCTTTGCAAGCCACATTTGGAACTTTTGA  518
            ||.||||||||||||||||||||||||||||||||||||||.||.||..||||||||||||||||.|||||.||
Sbjct  382  GATGAGCTGGGCCAGGGCTTGCAGGGCGTCGAGCAGAAGGTCCAATCCCTGCAAGCCACATTTGGGACTTTCGA  455

Query  519  GTCCATCTTGAGAAGCTCCCAACATAAACAAGACCTCACAGAGAAAGCTGTGAAGCAAGGGGAGAGTGAGGTCA  592
            ||||.||.||||||.||||||.||||||||.||.||||||||||||||.||||||.||||||||||.|||.|||
Sbjct  456  GTCCCTCCTGAGAAACTCCCAGCATAAACAGGATCTCACAGAGAAAGCCGTGAAGGAAGGGGAGAGCGAGCTCA  529

Query  593  GCCGGATCAGCGAAGTGCTGCAGAAACTCCAGAATGAGATTCTCAAAGACCTCTCGGATGGGATCCATGTGGTG  666
            .|||.||.||||||||.||.|||||..|.||||||||||||||||||||.||.|||||.||||||||.||||||
Sbjct  530  ACCGAATTAGCGAAGTTCTACAGAAGTTGCAGAATGAGATTCTCAAAGATCTGTCGGACGGGATCCACGTGGTG  603

Query  667  AAGGACGCCCGGGAGCGGGACTTCACGTCCCTGGAGAACACGGTGGAGGAGCGGCTGACGGAGCTCACCAAATC  740
            |||||.|||||||||||||||||||||||||||||||||||.||.||||||||.|||||||||||.|||||.||
Sbjct  604  AAGGATGCCCGGGAGCGGGACTTCACGTCCCTGGAGAACACAGTCGAGGAGCGCCTGACGGAGCTTACCAAGTC  677

Query  741  CATCAACGACAACATCGCCATCTTCACAGAAGTCCAGAAGAGGAGCCAGAAGGAGATCAATGACATGAAGGCAA  814
            .|||||.||||||||||||||||||||.||.||||||||||||||||||||||||||||||||..|.|||...|
Sbjct  678  TATCAATGACAACATCGCCATCTTCACTGATGTCCAGAAGAGGAGCCAGAAGGAGATCAATGAGGTCAAGATGA  751

Query  815  AGGTTGCCTCCCTGGAAGAATCTGAGGGGAA---CAAGCAGGATTTGAAAGCCTTAAAGGAAGCTGTGAAGGAG  885
            ||||.|||||||||||||||||..|||||.|   ||..|||||..|||||.|..|.|||||.||.|||||||||
Sbjct  752  AGGTGGCCTCCCTGGAAGAATCCAAGGGGGATCGCAGTCAGGACGTGAAAACTCTGAAGGACGCCGTGAAGGAG  825

Query  886  ATACAGACCTCAGCCAAGTCCAGAGAGTGGGACATGGAGGCCCTGAGAAGTACCCTTCAGACTATGGAGTCTGA  959
            .|.|||.||||....|.|||.||.|||.|||||||.||||||||||..|||.||||||||||.||||||||.||
Sbjct  826  GTCCAGGCCTCCATGATGTCGAGGGAGAGGGACATTGAGGCCCTGAAGAGTTCCCTTCAGACGATGGAGTCCGA  899

Query  960  CATCTACACCGAGGTCCGCGAGCTGGTGAGCCTCAAGCAGGAGCAGCAGGCTTTCAAGGAGGCGGCCGACACGG  1033
            |.|||||||.|||||.||.||.|||||||||||||||||||||||.|||||.||||||.|||||||||||.|.|
Sbjct  900  CGTCTACACAGAGGTGCGGGAACTGGTGAGCCTCAAGCAGGAGCAACAGGCGTTCAAGCAGGCGGCCGACTCAG  973

Query 1034  AGCGGCTCGCCCTGCAGGCCCTCACGGAGAAGCTTCTCAGGTCTGAGGAGTCCGTCTCCCGCCTCCCGGAGGAG  1107
            ||||.||.||.||||||||||||||||||||||||||..||||.|||||||||..|||.||.|||||.|||||.
Sbjct  974  AGCGCCTGGCTCTGCAGGCCCTCACGGAGAAGCTTCTGCGGTCCGAGGAGTCCTCCTCTCGTCTCCCAGAGGAC  1047

Query 1108  ATCCGGAGACTGGAGGAAGAGCTCCGCCAGCTGAAGTCCGATTCCCACGGGCCGAAGGAGGACGGAGGCTTCAG  1181
            |||||||||||||||||||||||.|..|||||||||..||...||||.|||.|..||||.|..|..|.|||||.
Sbjct 1048  ATCCGGAGACTGGAGGAAGAGCTACAGCAGCTGAAGGTCGGGGCCCATGGGTCAGAGGAAGGTGCCGTCTTCAA  1121

Query 1182  ACACTCGGAAGCCTTTGAGGCACTCCAGCAAAAGAGTCAGGGACTGGACTCCAGGCTCCAGCACGTGGAGGATG  1255
            |.||||..|||||||.||||.|||.|||....|||.|.||||.||||...|||||||||||.|.||.|||||.|
Sbjct 1122  AGACTCCAAAGCCTTAGAGGAACTGCAGAGGCAGATTGAGGGCCTGGGTGCCAGGCTCCAGTATGTAGAGGACG  1195

Query 1256  GGGTGCT-CTCCATGCAGGTGGCTTCTGCGCGCCAGACCGAGAGCCTGGAGTCCCTCCTGTCCAAGAGCCAGGA  1328
            |||| || |||.|||||||||||||||||.|||||.|||||.|||||||||||.||||||||||||||||||||
Sbjct 1196  GGGT-CTACTCAATGCAGGTGGCTTCTGCACGCCACACCGAAAGCCTGGAGTCGCTCCTGTCCAAGAGCCAGGA  1268

Query 1329  GCACGAGCAGCGCCTGGCCGCCCTGCAGGGGCGCCTGGAAGGCCTCGGGTCCTCAGAGGCAGACCAGGATGGCC  1402
            |.|||||||.||||||||....|||||||.||.|.|||.|..|||.||.||||||            ..||.||
Sbjct 1269  GTACGAGCAACGCCTGGCTATGCTGCAGGAGCACGTGGGAAACCTGGGCTCCTCA------------TCTGACC  1330

Query 1403  TGGCCAGCACGGTGAGGAGCCTGGGCGAGACCCAGCTGGTGCTCTACGGTGACGTGGAGGAGCTGAAGAGGAGT  1476
            ||||||||||.||.|||||||||||.|||||||||||||.|||.|.|.|.|||.||.|||||||||||..|||.
Sbjct 1331  TGGCCAGCACAGTCAGGAGCCTGGGGGAGACCCAGCTGGCGCTGTCCAGCGACTTGAAGGAGCTGAAGCAGAGC  1404

Query 1477  GTGGGCGAGCTCCCCAGCACCGTGGAATCACTCCAGAAGGTGCAGGAGCAGGTGCACACGCTGCTCAGTCAGGA  1550
            .||||.|||||.|||.|.||||||||.||||         ||||||||||.||||.|.|.||||||||.|||||
Sbjct 1405  CTGGGTGAGCTGCCCGGTACCGTGGAGTCAC---------TGCAGGAGCAAGTGCTCTCACTGCTCAGCCAGGA  1469

Query 1551  CCAAGCCCAGGCCGCCCGTCTGCCTCCTCAGGACTTCCTGGACAGACTTTCTTCTCTAGACAACCTGAAAGCCT  1624
            ||||||||||||||...|..||||||||||||||||||||||||||||.||.||||||||||||||||||.|||
Sbjct 1470  CCAAGCCCAGGCCGAGGGCTTGCCTCCTCAGGACTTCCTGGACAGACTGTCCTCTCTAGACAACCTGAAATCCT  1543

Query 1625  CAGTCAGCCAAGTGGAGGCGGACTTGAAAATGCTCAGGACTGCTGTGGACAGTTTGGTTGCATACTCGGTCAAA  1698
            ||||.||||||||||||.|.|||||||||||||||||||||||.||||||||||||||.||.||.||.||||||
Sbjct 1544  CAGTGAGCCAAGTGGAGTCAGACTTGAAAATGCTCAGGACTGCCGTGGACAGTTTGGTGGCCTATTCCGTCAAA  1617

Query 1699  ATAGAAACCAACGAGAACAATCTGGAATCAGCCAAGGGTTTACTAGATGACCTGAGGAATGATCTGGATAGGTT  1772
            ||.|||||.||.|||||.||..|.||.|||||||||||.||.||.|||||||||.||||.||.|||||||||||
Sbjct 1618  ATCGAAACGAATGAGAATAACTTAGAGTCAGCCAAGGGCTTGCTGGATGACCTGCGGAACGACCTGGATAGGTT  1691

Query 1773  GTTTGTGAAAGTGGAGAAGATTCACGAAAAGGTC  1806
            ||||.|||||||.||||||||.||.||||||.||
Sbjct 1692  GTTTCTGAAAGTTGAGAAGATCCATGAAAAGATC  1725