Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15013
Subject:
XM_011246543.2
Aligned Length:
4210
Identities:
1518
Gaps:
2492

Alignment

Query    1  ATGTCTGCGGAGAGCGGCCCTGGGACGAGATTGAGAAATCTGCCAGTAATGGGGGATGGACTAGAAACTTCCCA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AATGTCTACAACACAGGCCCAGGCCCAACCCCAGCCAGCCAACGCAGCCAGCACCAACCCCCCGCCCCCAGAGA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CCTCCAACCCTAACAAGCCCAAGAGGCAGACCAACCAACTGCAATACCTGCTCAGAGTGGTGCTCAAGACACTA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TGGAAACACCAGTTTGCATGGCCTTTCCAGCAGCCTGTGGATGCCGTCAAGCTGAACCTCCCTGATTACTATAA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  GATCATTAAAACGCCTATGGATATGGGAACAATAAAGAAGCGCTTGGAAAACAACTATTACTGGAATGCTCAGG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AATGTATCCAGGACTTCAACACTATGTTTACAAATTGTTACATCTACAACAAGCCTGGAGATGACATAGTCTTA  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  ATGGCAGAAGCTCTGGAAAAGCTCTTCTTGCAAAAAATAAATGAGCTACCCACAGAAGAAACCGAGATCATGAT  518
            |||||||||||||||||.||||||||||||||||||||.|||||.||.||.|||||||||||.|||||||||||
Sbjct    1  ATGGCAGAAGCTCTGGAGAAGCTCTTCTTGCAAAAAATCAATGAACTGCCTACAGAAGAAACTGAGATCATGAT  74

Query  519  AGTCCAGGCAAAAGGAAGAGGACGTGGGAGGAAAGAAACAG---GGACAGCAAAACCTGGCGTTTCCACGGTAC  589
            ||||||||||||||||||||||||.||||||||||||||||   ||.|||||||.|||||.||.||||||||||
Sbjct   75  AGTCCAGGCAAAAGGAAGAGGACGAGGGAGGAAAGAAACAGGTAGGGCAGCAAAGCCTGGTGTATCCACGGTAC  148

Query  590  CAAACACAACTCAAGCATCGACTCCTCCGCAGACCCAGACCCCTCAGCCGAA---TCCTCCTCCTGTGCAGGCC  660
            |||||||||||||||||||.|||.||||||||||||||||.|||||||.|||   ||||||.||||||||||||
Sbjct  149  CAAACACAACTCAAGCATCAACTTCTCCGCAGACCCAGACGCCTCAGCAGAACCCTCCTCCACCTGTGCAGGCC  222

Query  661  ACGCCTCACCCCTTCCCTGCCGTCACCCCGGACCTCATCGTCCAGACCCCTGTCATGACAGTGGTGCCTCCCCA  734
            ||..||||||||||.|||||.||||||||.||||||||.|.||||.|.||||||||||||.|||||||.||.||
Sbjct  223  ACAACTCACCCCTTTCCTGCTGTCACCCCAGACCTCATTGCCCAGCCTCCTGTCATGACAATGGTGCCCCCTCA  296

Query  735  GCCACTGCAGACGCC--CCCCGCCAGTGCCCCCCCAGCCACAACCCCAACCCGCTTCAGCTCCCCAGCCCGTAC  806
            ||||||.|||||.||  |.|||   ||.|||||||||||||.|||||.|||.|||.|||.|||.|||||.||.|
Sbjct  297  GCCACTTCAGACTCCTTCACCG---GTACCCCCCCAGCCACCACCCCCACCTGCTCCAGTTCCACAGCCTGTGC  367

Query  807  AGAGCCACCCACCCATCATCGCGGCCACCCCACAGCCTGTGAAGACAAAGAAGGGAGTGAAGAGGAAAGCAGAC  880
            ||||.|||||.||||||||.|||.|||||||.||||||||||||||||||||.||.|||||||||||||||||.
Sbjct  368  AGAGTCACCCGCCCATCATTGCGACCACCCCCCAGCCTGTGAAGACAAAGAAAGGGGTGAAGAGGAAAGCAGAT  441

Query  881  ACCACCACCCCCACCACCATTGACCCCATTCACGAGCCACCCTCGCTGCCCCCGGAGCCCAAGACCACCAAGCT  954
            |||||||||||.||||||||.|||||||||||.|||||||||||.|||.||||.||||||||||||.|||||||
Sbjct  442  ACCACCACCCCTACCACCATCGACCCCATTCATGAGCCACCCTCACTGGCCCCAGAGCCCAAGACCGCCAAGCT  515

Query  955  GGGCCAGCGGCGGGAGAGCAGCCGGCCTGTGAAACCTCCAAAGAAGGACGTGCCCGACTCTCAGCAGCACCCAG  1028
            |||.|..|||||||||||||||.|.||||||||.||||||||||||||.||.||.|||||.|||||||||||||
Sbjct  516  GGGTCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGACTCACAGCAGCACCCAG  589

Query 1029  CACCAGAGAAGAGCAGCAAGGTCTCGGAGCAGCTCAAGTGCTGCAGCGGCATCCTCAAGGAGATGTTTGCCAAG  1102
            ..||||||||||||||||||.||||.||||||||.|||||||||||.|||||||||||||||||||||||||||
Sbjct  590  GGCCAGAGAAGAGCAGCAAGATCTCTGAGCAGCTAAAGTGCTGCAGTGGCATCCTCAAGGAGATGTTTGCCAAG  663

Query 1103  AAGCACGCCGCCTACGCCTGGCCCTTCTACAAGCCTGTGGACGTGGAGGCACTGGGCCTACACGACTACTGTGA  1176
            ||.||.||.|||||.||||||||.|||||||||||||||||.||||||||||||||.||.||||||||||||||
Sbjct  664  AAACATGCTGCCTATGCCTGGCCTTTCTACAAGCCTGTGGATGTGGAGGCACTGGGTCTGCACGACTACTGTGA  737

Query 1177  CATCATCAAGCACCCCATGGACATGAGCACAATCAAGTCTAAACTGGAGGCCCGTGAGTACCGTGATGCTCAGG  1250
            |||||||||.||.||||||||||||||||||||||||||||||||.|||.||||.||||||.|.|||||.||||
Sbjct  738  CATCATCAAACATCCCATGGACATGAGCACAATCAAGTCTAAACTAGAGTCCCGAGAGTACAGAGATGCCCAGG  811

Query 1251  AGTTTGGTGCTGACGTCCGATTGATGTTCTCCAACTGCTATAAGTACAACCCTCCTGACCATGAGGTGGTGGCC  1324
            |.|||||||||||.||||||||||||||||||||||||||.|||||||||||.|||||||||||.|||||.|||
Sbjct  812  AATTTGGTGCTGATGTCCGATTGATGTTCTCCAACTGCTACAAGTACAACCCCCCTGACCATGAAGTGGTAGCC  885

Query 1325  ATGGCCCGCAAGCTCCAGGATGTGTTCGAAATGCGCTTTGCCAAGATGCCGGACGAGCCTGAGGAGCCAGTGGT  1398
            |||||.||.||.||||||||||||||.|||||||||||||||||||||||.||.||||||||.||||||||.||
Sbjct  886  ATGGCTCGAAAACTCCAGGATGTGTTTGAAATGCGCTTTGCCAAGATGCCTGATGAGCCTGAAGAGCCAGTTGT  959

Query 1399  GGCCGTGTCCTCCCCCGGCAGTGCTCCCTCCCACCAAGGTTGTGGCCCCGCCCTCATCCCAGCGACAGCAGCAG  1472
            ..|.||||||| |.||.|||||||..||.||.||.|||||.||.|||||.||||||| |.||.|||||||||||
Sbjct  960  TACAGTGTCCT-CTCCTGCAGTGCCACCCCCTACAAAGGTGGTAGCCCCACCCTCAT-CTAGTGACAGCAGCAG  1031

Query 1473  CGATAGCTCCTCGGACAGTGACAGTTCGACTGATGACTCTGAGGAGGAGCGAGCCCAGCGGCTGGCTGAGCTCC  1546
            |||.||.||.||.|||||.||||||||.|||||.|||||||||||.|||||||||||||||||||||||.||||
Sbjct 1032  CGACAGTTCTTCCGACAGCGACAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCAGCGGCTGGCTGAACTCC  1105

Query 1547  AGGAGCAGCTCAAAGCCGTGCACGAGCAGCTTGCAGCCCTCTCTCAGCCCCAGCAGAACAAACCAAAGAAAAAG  1620
            ||||.||||||||.||||||||.||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1106  AGGAACAGCTCAAGGCCGTGCATGAGCAGCTTGCAGCCCTCTCACAGCCCCAGCAGAACAAACCAAAGAAAAAG  1179

Query 1621  GAGAAAGACAAGAAGGAAAAGAAAAAAGAAAAGCACAAAAGGAAAGAGGAAGTGGAAGAGAATAAAAAAAGCAA  1694
            |||||.||||||||||||||||||||.|||||||||||||.||||||.||||||||.||.||||||||||||||
Sbjct 1180  GAGAAGGACAAGAAGGAAAAGAAAAAGGAAAAGCACAAAAAGAAAGAAGAAGTGGAGGAAAATAAAAAAAGCAA  1253

Query 1695  AGCCAAGGAACCTCCTCCTAAAAAGACGAAGAAAAATAATAGCAGCAACAGCAATGTGAGCAAGAAGGAGCCAG  1768
            |.|||||||||.||||||.||||||||.|||||||||||.|||||||||||||||||||||||||||||.||||
Sbjct 1254  AACCAAGGAACTTCCTCCCAAAAAGACAAAGAAAAATAACAGCAGCAACAGCAATGTGAGCAAGAAGGAACCAG  1327

Query 1769  CGCCCATGAAGAGCAAGCCCCCTCCCACGTATGAGTCGGAGGAAGAGGACAAGTGCAAGCCTATGTCCTATGAG  1842
            ..||||.|||||.||||||.||||||||.|||||.||.||.||.|||||.|||||.|||||.|||||.||||||
Sbjct 1328  TACCCACGAAGACCAAGCCGCCTCCCACATATGAATCAGAAGAGGAGGATAAGTGTAAGCCCATGTCTTATGAG  1401

Query 1843  GAGAAGCGGCAGCTCAGCTTGGACATCAACAAGCTCCCCGGCGAGAAGCTGGGCCGCGTGGTGCACATCATCCA  1916
            ||||||||||||||.||..|.||.||||||||.||.||.||.||||||||.|||||.||.||.|||||.||.||
Sbjct 1402  GAGAAGCGGCAGCTAAGTCTAGATATCAACAAACTTCCTGGTGAGAAGCTAGGCCGTGTAGTACACATAATTCA  1475

Query 1917  GTCACGGGAGCCCTCCCTGAAGAATTCCAACCCCGACGAGATTGAAATCGACTTTGAGACCCTGAAGCCGTCCA  1990
            ||||.||||.||.||.||.||.||.|||||||||||.||||||||.||.||||||||||||||||||||.||.|
Sbjct 1476  GTCAAGGGAACCATCACTTAAAAACTCCAACCCCGATGAGATTGAGATTGACTTTGAGACCCTGAAGCCATCTA  1549

Query 1991  CACTGCGTGAGCTGGAGCGCTATGTCACCTCCTGTTTGCGGAAGAAAAGGAAACCTCAAGCTGAGAAAGTTGAT  2064
            ||||.||.|||.|||||||.||||||||||||||||||||||||||||||||||||||||||||.||||||||.
Sbjct 1550  CACTACGAGAGTTGGAGCGATATGTCACCTCCTGTTTGCGGAAGAAAAGGAAACCTCAAGCTGAAAAAGTTGAC  1623

Query 2065  GTGATTGCCGGCTCCTCCAAGATGAAGGGCTTCTCGTCCTCAGAGTCGGAGAGCTCCAGTGAGTCCAGCTCCTC  2138
            ||||||||.||.||.||||||||||||||.|||||.|||||.||||||||||||.||||.||.|||||||||||
Sbjct 1624  GTGATTGCTGGTTCTTCCAAGATGAAGGGATTCTCATCCTCTGAGTCGGAGAGCACCAGCGAATCCAGCTCCTC  1697

Query 2139  TGACAGCGAAGACTCCGAAACA-----GGTCCTGCC--------------------------------------  2169
            ||||||.||||||||.||||||     ||  ||.||                                      
Sbjct 1698  TGACAGTGAAGACTCTGAAACAGAGATGG--CTCCCAAGTCAAAAAAGAAGGGGCACACTGGGAGGGACCAGAA  1769

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 1770  AAAGCATCATCACCATCACCATCCACAGATGCAGCCAGCCCCAGCTCCTGTGCCCCAGCAGCCGCCCCCACCTC  1843

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 1844  CACAGCAGCCTCCTCCACCCCCACCTCCGCAGCAGCAGCAGCAGCAACCTCCACCCCCACCACCTCCGCCCTCC  1917

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 1918  ATGCCACAGCAGACTGCCCCAGCGATGAAGTCCTCGCCCCCACCCTTCATCACTGCCCAGGTCCCCGTCCTGGA  1991

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 1992  ACCACAGCTGCCAGGCAGTGTCTTTGACCCTATTGGCCACTTCACCCAGCCCATCTTGCACCTGCCGCAGCCGG  2065

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 2066  AGCTGCCTCCTCACCTGCCCCAGCCACCTGAGCACAGCACTCCACCCCATCTCAACCAGCATGCTGTGGTCTCT  2139

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 2140  CCTCCAGCTTTGCACAATGCGCTGCCCCAACAGCCATCTCGGCCCAGTAACCGAGCTGCTGCTCTGCCCCCAAA  2213

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 2214  GCCTACCCGACCCCCAGCTGTGTCCCCTGCCCTGGCCCAGCCCCCCCTGCTCCCACAACCACCAATGGCTCAGC  2287

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 2288  CCCCCCAAGTGCTGCTGGAGGATGAAGAGCCACCTGCCCCACCCCTCACCTCCATGCAGATGCAGTTGTACCTA  2361

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 2362  CAGCAGCTGCAGAAGGTGCAGCCTCCCACACCACTACTCCCTTCCGTGAAGGTGCAGTCCCAACCCCCACCGCC  2435

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 2436  TTTGCCGCCTCCACCCCACCCTTCTGTGCAGCAGCAGCAGCTCCAGCCACAGCCACCGCCACCCCCACCTCCTC  2509

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 2510  AGCCACAGCCACCACCCCAGCAACAACACCAGCCTCCACCACGACCAGTTCACTTGCCATCCATGCCCTTTTCT  2583

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 2584  GCTCATATTCAGCAGCCCCCACCACCCCCAGGACAGCAACCTACTCACCCACCCCCAGGACAGCAGCCCCCACC  2657

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 2658  ACCACAGCCTGCCAAGCCCCAGCAAGTCATCCAGCATCACCCTTCCCCCCGGCACCACAAGTCAGACCCCTACT  2731

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 2732  CAGCTGGTCATCTTCGTGAGGCTCCCTCTCCGCTTATGATACATTCCCCTCAGATGCCACAGTTCCAGAGCCTG  2805

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 2806  ACCCATCAGTCTCCTCCCCAGCAAAACGTCCAGCCTAAGAAGCAGGTAAAGGGCAGGGCTGAGCCACAGCCACC  2879

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 2880  AGGGCCAGTCATGGGCCAAGGCCAGGGATGCCCACCTGCCTCACCGGCTGCCGTGCCTATGCTGTCCCAGGAGC  2953

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 2954  TGCGACCACCTTCAGTCGTCCAGCCCCAGCCCCTGGTGGTAGTAAAGGAGGAGAAGATTCACTCACCAATCATT  3027

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 3028  CGCAGCGAGCCTTTCAGCACCTCACTTCGACCAGAGCCCCCCAAGCACCCAGAGAACATCAAGGCCCCAGTCCA  3101

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 3102  CCTGCCCCAGCGGCCTGAGATGAAGCCTGTAGACATAGGGAGGCCTGTGATCCGGCCTCCAGAGCAGAGTGCAC  3175

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 3176  CCCCACCAGGGGCCCCTGACAAGGACAAACAGAAGCAGGAGCCAAAAACACCAGTGGCACCCAAAAAGGACCTG  3249

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 3250  AAAATTAAGAACATGGGCTCCTGGGCCAGCCTGGTACAGAAGCATCCGACCACCCCATCCTCCACAGCCAAGTC  3323

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 3324  CTCAAGTGACAGCTTTGAGCATTTCCGCCGTGCTGCTCGGGAGAAGGAGGAGAGGGAAAAGGCCCTGAAGGCTC  3397

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 3398  AGGCTGAGCATGCAGAGAAGGAGAAGGAGCGGCTGAGGCAGGAGCGCATGAGGAGCCGAGAGGATGAAGATGCG  3471

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 3472  CTGGAACAGGCACGTCGAGCCCATGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAG  3545

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 3546  ACAGGAGCAGCAGCAGCAGCAGCAGCAGGCAGCTGCTGTGGCCGCTGCCTCTGCCCCCCAGGCCCAGAGCTCCC  3619

Query 2170  --------------------------------------------------------------------------  2169
                                                                                      
Sbjct 3620  AGCCCCAGTCTATGCTGGACCAGCAGAGGGAGTTGGCCCGGAAACGAGAGCAGGAGCGGAGGCGCAGGGAGGCA  3693

Query 2170  ------------------------------------------------------------------  2169
                                                                              
Sbjct 3694  ATGGCAGCTACAATTGACATGAATTTCCAGAGTGATCTTTTGTCAATATTTGAAGAAAATCTTTTT  3759

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