Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15026
Subject:
XM_006529356.3
Aligned Length:
2788
Identities:
2084
Gaps:
437

Alignment

Query    1  ATGGAGGGCGACGGGGTGCCATGGGGCAGCGAGCCCGTCTCGGGTCCCGGCCCCGGCGGCGGCGGAATGATCCG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CGAGCTGTGCCGGGGCTTCGGCCGCTACCGCCGCTACCTGGGACGGCTGCGACAGAACCTGCGCGAGACCCAGA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AGTTCTTCCGCGACATCAAGTGCTCCCACAACCACACTTGTCTCTCCTCCCTCACGGGCGGCGGCGGGGCCGAG  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  CGCGGCCCTGCAGGCGATGTCGCCGAAACCGGGCTGCAGGCGGGCCAACTGAGCTGCATTTCCTTCCCACCTAA  296
                                                                                    |.
Sbjct    1  ------------------------------------------------------------------------AT  2

Query  297  GGAAGAGAAGTACCTCCAGCAGATTGTGGACTGCCTCCCTTGCATACTGATCCTCGGCCAGGATTGTAACGTCA  370
            ||||||||.|||.||.||||||.||||||||.||||.||.||.||||||||||||||||||||.||.||||.||
Sbjct    3  GGAAGAGACGTATCTGCAGCAGCTTGTGGACCGCCTTCCCTGTATACTGATCCTCGGCCAGGACTGCAACGCCA  76

Query  371  AGTGCCAGCTGTTGAATCTGCTGTTGGGGGTGCAGGTGCTTCCCACCACCAAGCTGGGCAGTGAGGAGAGCTGT  444
            |||||||||||.||||.||||||||||||||||||||||||||||||..||||||||.||||||.|||||||||
Sbjct   77  AGTGCCAGCTGCTGAACCTGCTGTTGGGGGTGCAGGTGCTTCCCACCCTCAAGCTGGACAGTGATGAGAGCTGT  150

Query  445  AAGCTTCGGCGCCTCCGCTTCACCTATGGGACTCAGACTCGGGTCAGCCTGGCGCTCCCTGGACAGTATGAACT  518
            ||||||||.|||||||||||||||||||||||||.|||||||||||||.||||||||||.||.|||||||||||
Sbjct  151  AAGCTTCGTCGCCTCCGCTTCACCTATGGGACTCGGACTCGGGTCAGCTTGGCGCTCCCCGGTCAGTATGAACT  224

Query  519  AGTGCACACGCTGGTTGCTCATCAGGGCAACTGGGAGACCATCCCTGAGGAGGATCTGGAGGTCCAAGAGAACA  592
            ||||||||||||.|.|.|.|||||||.||||||||||||.||||||||||||||.||||||||.|||||..|||
Sbjct  225  AGTGCACACGCTAGCTTCACATCAGGACAACTGGGAGACTATCCCTGAGGAGGACCTGGAGGTTCAAGAAGACA  298

Query  593  ATGAGGATGCTGCTCATGTTTTAGCGGAACTGGAGGTAACGATGCACCATGCTCTCTTACAGGAAGTGGACGTT  666
            .||||||.|||||||||||..||||.||.||.|||||.||.|||||.|||||||||.|.||||||||||||.||
Sbjct  299  GTGAGGACGCTGCTCATGTGCTAGCTGACCTCGAGGTGACAATGCATCATGCTCTCCTGCAGGAAGTGGACATT  372

Query  667  GTGGTAGCACCATGCCAAGGCCTCCGGCCCACAGTGGATGTTCTGGGTGACTTGGTGAATGATTTCTTGCCTGT  740
            |||||.|||||.||||...|||.|||||||.||||.|||||||||.|||||||||..|||||.|||||||||||
Sbjct  373  GTGGTGGCACCGTGCCCGAGCCACCGGCCCTCAGTAGATGTTCTGAGTGACTTGGCAAATGACTTCTTGCCTGT  446

Query  741  GATAACCTATGCACTCCACAAAGATGAACTCTCTGAGAGGGATGAGCAAGAGCTTCAGGAAATCCGAAAGTATT  814
            |||||||||||||||.|||||.|||||||||||||||.|||.||||||||||||||.||||.|..||.||||||
Sbjct  447  GATAACCTATGCACTTCACAAGGATGAACTCTCTGAGCGGGGTGAGCAAGAGCTTCGGGAAGTTAGACAGTATT  520

Query  815  TCTCCTTTCCTGTATTCTTTTTCAAAGTGCCGAAACTGGGCTCGGAGATAAT-AGACTCCTCAACCAGGAGAAT  887
            |||||||.||..|.||||||||||||||.||.||.||      ||||||||| || |||.||.|...|||||..
Sbjct  521  TCTCCTTCCCCATGTTCTTTTTCAAAGTACCCAAGCT------GGAGATAATCAG-CTCTTCCAGTGGGAGAGC  587

Query  888  GGAGAGCGAAAGATCACCGCTTTATCGCCAGCTAATTGACCTGGGCTATCTGAGCAGCAGTCACTGGAACTGTG  961
            .|||||.|||||.|||||.||.|||.|.|||||..|.|||||||||||.|||||||||||||||.|||||||||
Sbjct  588  AGAGAGTGAAAGGTCACCACTGTATGGACAGCTGGTGGACCTGGGCTACCTGAGCAGCAGTCACAGGAACTGTG  661

Query  962  GGGCTCCTGGCCAGGATACTAAAGCTCAGAGCATGTTGGTGGAACAGAGTGAAAAGCTGAGACACTTGAGCACA  1035
            .|.|..|||.||||||...||||||||||||||||||||||||.||.|||||.|||||||.|||..||||.|||
Sbjct  662  TGCCCTCTGACCAGGACTGTAAAGCTCAGAGCATGTTGGTGGAGCAAAGTGAGAAGCTGAAACAACTGAGTACA  735

Query 1036  TTTTCTCACCAGGTGTTACAGACTCGCCTGGTGGATGCAGCCAAGGCCCTGAACCTGGTGCACTGCCACTGCCT  1109
            ||||||||||||.||.||||||..|||||.|||||||||||||||||||||||..||||||||.||||||||||
Sbjct  736  TTTTCTCACCAGCTGCTACAGAACCGCCTAGTGGATGCAGCCAAGGCCCTGAATGTGGTGCACAGCCACTGCCT  809

Query 1110  TGACATCTTTATTAACCAGGCATTTGACATGCAGCGGGACCTGCAGATCACTCCCAAACGTCTGGAATATACTC  1183
            |||||||||||||||||||||.||||||||||||||||||||||||||.|||||||||||.||.|||||||||.
Sbjct  810  TGACATCTTTATTAACCAGGCTTTTGACATGCAGCGGGACCTGCAGATTACTCCCAAACGCCTAGAATATACTA  883

Query 1184  GAAAAAAGGAGAATGAGTTGTATGAATCATTGATGAATATTGCCAACCGAAAGCAGGAGGAAATGAAGGATATG  1257
            ||||||||||||||||.|||||||||||.||||||||||||||||||||||||||.||||||||||||||||||
Sbjct  884  GAAAAAAGGAGAATGAATTGTATGAATCGTTGATGAATATTGCCAACCGAAAGCAAGAGGAAATGAAGGATATG  957

Query 1258  ATTGTTGAGACACTTAATACCATGAAGGAGGAACTTCTGGATGATGCTACTAACATGGAGTTTAAAGACGTCAT  1331
            |||||||||||||||||.||||||||.|||||||||||||||||||||.|.|||||||||||||||||.|||||
Sbjct  958  ATTGTTGAGACACTTAACACCATGAAAGAGGAACTTCTGGATGATGCTGCCAACATGGAGTTTAAAGATGTCAT  1031

Query 1332  TGTCCCTGAGAATGGAGAACCAGTAGGCACCAGAGAGATCAAATGCTGCATCCGACAGATCCAGGAACTCATCA  1405
            |||||||||||||||||||.||.|.||.|||||.||||||||||.|||||||||.|||||||||||.|||||||
Sbjct 1032  TGTCCCTGAGAATGGAGAAACAATCGGGACCAGGGAGATCAAATCCTGCATCCGCCAGATCCAGGAGCTCATCA  1105

Query 1406  TCTCCCGACTTAATCAGGCAGTGGCTAATAAGCTGATCAGCTCAGTGGATTACCTGAGGGAAAGCTTCGTCGGA  1479
            |||||.|.||.||||||||.|||||.||.||||||||||||||||||||.||||||.||||||||||.||.||.
Sbjct 1106  TCTCCAGGCTCAATCAGGCCGTGGCCAACAAGCTGATCAGCTCAGTGGACTACCTGCGGGAAAGCTTTGTTGGG  1179

Query 1480  ACCCTGGAACGATGTCTGCAGAGCCTGGAGAAGTCTCAGGATGTCTCAGTTCACATCACCAGTAATTATCTCAA  1553
            ||||||||.||.||||||||||||||.||.||.||.|||||||||||||||||.||.|||||.||.||||||||
Sbjct 1180  ACCCTGGAGCGGTGTCTGCAGAGCCTTGAAAAATCACAGGATGTCTCAGTTCATATTACCAGCAACTATCTCAA  1253

Query 1554  ACAGATCTTAAATGCTGCCTATCATGTTGAAGTCACGTTTCACTCAGGGTCGTCAGTTACAAGGATGCTATGGG  1627
            |||||||||||||||.||.||.||||||||.|||||.||||||||.||.||.||||||||..|||||||.||||
Sbjct 1254  ACAGATCTTAAATGCCGCTTACCATGTTGAGGTCACTTTTCACTCGGGATCCTCAGTTACTCGGATGCTTTGGG  1327

Query 1628  AGCAAATCAAACAGATCATCCAGCGCATCACATGGGTGAGCCCACCTGCCATCACTCTGGAATGGAAGAGGAAG  1701
            |.||||||||.||||||||||||||.|||||||||||||.||||||..||||||||||.||.||||||||||||
Sbjct 1328  AACAAATCAAGCAGATCATCCAGCGTATCACATGGGTGAACCCACCCACCATCACTCTAGAGTGGAAGAGGAAG  1401

Query 1702  GTGGCCCAGGAAGCCATTGAGAGCCTCAGCGCCTCCAAATTGGCTAAGAGCATTTGCAGCCAATTCCGGACTCG  1775
            |||||||||||||||||.||.|||||||||||||||||.|||||.|||||||||||||||||.|||||.||.||
Sbjct 1402  GTGGCCCAGGAAGCCATCGACAGCCTCAGCGCCTCCAAGTTGGCCAAGAGCATTTGCAGCCAGTTCCGCACGCG  1475

Query 1776  GCTCAATAGTTCCCACGAGGCTTTTGCAGCCTCCTTGCGGCAGCTGGAAGCTGGCCACTCAGGCCGGTTAGAGA  1849
            ||||||||||||.||.|||||.|||||||||||||||.|||||||||||||||||||.||.|||||..|.||||
Sbjct 1476  GCTCAATAGTTCTCATGAGGCGTTTGCAGCCTCCTTGAGGCAGCTGGAAGCTGGCCATTCTGGCCGTCTGGAGA  1549

Query 1850  AAACGGAAGATCTATGGCTGAGGGTTCGGAAAGATCATGCTCCCCGCCTGGCCCGCCTTTCTCTGGAAAGCCGT  1923
            ||||.||||||||.|||||.|.||||||.||||||||.||.||.||.||||||||||||||.||.||.|||||.
Sbjct 1550  AAACTGAAGATCTGTGGCTAAAGGTTCGAAAAGATCACGCCCCTCGTCTGGCCCGCCTTTCGCTAGAGAGCCGG  1623

Query 1924  TCTTTACAGGATGTCTTGCTTCATCGTAAACCTAAACTGGGACAGGAACTGGGCCGGGGCCAGTATGGTGTGGT  1997
            |||||||||||||||||||||||.||||||||||||.|.|||||||||||.|||||||||||.|||||||||||
Sbjct 1624  TCTTTACAGGATGTCTTGCTTCACCGTAAACCTAAATTAGGACAGGAACTAGGCCGGGGCCAATATGGTGTGGT  1697

Query 1998  ATACCTGTGTGACAACTGGGGAGGACACTTCCCTTGTGCCCTCAAATCAGTTGTCCCTCCAGATGAGAAGCACT  2071
            |||||||||||||||||||||.||||||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1698  ATACCTGTGTGACAACTGGGGGGGACACTTCCCTTGTGCCCTCAAATCAGTTGTTCCTCCAGATGAGAAGCACT  1771

Query 2072  GGAATGATCTGGCTTTGGAATTTCACTATATGAGGTCTCTGCCGAAGCATGAGCGATTGGTGGATCTCCATGGT  2145
            ||||.||||||||.|||||.|||||.||.||||||||||||||.|||||||||||..||||.|||||.|||||.
Sbjct 1772  GGAACGATCTGGCATTGGAGTTTCATTACATGAGGTCTCTGCCAAAGCATGAGCGGCTGGTCGATCTTCATGGC  1845

Query 2146  TCAGTCATTGACTACAACTATGGTGGTGGCTCCAGCATTGCTGTGCTCCTCATTATGGAGCGGCTACACCGGGA  2219
            ||||||||||||||||||||||||||.|||||||||.|||||||.||.||.||.||||||||||||||||||||
Sbjct 1846  TCAGTCATTGACTACAACTATGGTGGCGGCTCCAGCGTTGCTGTACTGCTTATCATGGAGCGGCTACACCGGGA  1919

Query 2220  TCTCTACACAGGGCTGAAGGCTGGGCTGACCCTGGAGACACGTTTGCAGATAGCACTAGATGTGGTGGAGGGAA  2293
            .|||||||||||||||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||||
Sbjct 1920  CCTCTACACAGGGCTGAAGGCTGGGCTGACCCTGGAGACACGTTTGCAAATAGCTCTGGATGTGGTGGAGGGAA  1993

Query 2294  TCCGCTTCCTGCACAGCCAGGGACTTGTCCATCGTGATATCAAACTGAAAAATGTGCTGCTGGATAAGCAGAAC  2367
            |||||||.||||||||||||||.|||||.|||||.|||||||||||||||||||||||||||||.||.||.|||
Sbjct 1994  TCCGCTTTCTGCACAGCCAGGGGCTTGTTCATCGGGATATCAAACTGAAAAATGTGCTGCTGGACAAACAAAAC  2067

Query 2368  CGTGCCAAGATCACTGACTTAGGATTCTGCAAGCCAGAGGCCATGATGTCAGGCAGCATTGTGGGGACACCAAT  2441
            ||||||||||||||.||||||||||||||.||.|||||.||.||||||||||||||||||||||||||||||||
Sbjct 2068  CGTGCCAAGATCACCGACTTAGGATTCTGTAAACCAGAAGCTATGATGTCAGGCAGCATTGTGGGGACACCAAT  2141

Query 2442  CCATATGGCCCCTGAACTTTTCACAGG-----------------------------------------------  2468
            |||||||||||||||||||||||||||                                               
Sbjct 2142  CCATATGGCCCCTGAACTTTTCACAGGAAAGTATGATAACTCTGTGGACGTCTATGCTTTTGGGATCCTTTTTT  2215

Query 2469  --------------GGCT--------------------------------------------------------  2472
                          ||||                                                        
Sbjct 2216  GGTATATCTGCTCCGGCTCTATCAAGCTCCCTGAGGCATTTGAGAGGTGTGCTAGCAAAGACCATCTCTGGAAT  2289

Query 2473  ------------------CGCCCAGAACGTCTTCCTGTGTTTGATGAGGAGTGCTGGCAGTTGATGGAAGCCTG  2528
                              ||.|||||.|||||||||||||||||||||||||||||||||||||||||.||.||
Sbjct 2290  AATGTGCGCAGAGGGACCCGTCCAGAGCGTCTTCCTGTGTTTGATGAGGAGTGCTGGCAGTTGATGGAGGCGTG  2363

Query 2529  TTGGGATGGCGACCCCTTGAAGAGGCCTCTCTTGGGCATTGTCCAGCCCATGCTCCAGGGCATCATGAATCGGC  2602
            |||||||||.|||||||||||||||||.|||||||||||.||.|||||.|||||||...||||.|||.|.||||
Sbjct 2364  TTGGGATGGTGACCCCTTGAAGAGGCCCCTCTTGGGCATCGTGCAGCCTATGCTCCGAAGCATTATGGACCGGC  2437

Query 2603  TCTGCAAGTCCAATTCTGAGCAGCCAAACAGAGGACTAGATGATTCTACT  2652
            |||||||||.||..|||||.||.|||||||||||||||||.|||||||||
Sbjct 2438  TCTGCAAGTGCAGCTCTGAACAACCAAACAGAGGACTAGACGATTCTACT  2487

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.