Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15026
Subject:
XM_011509393.2
Aligned Length:
2799
Identities:
2039
Gaps:
744

Alignment

Query    1  ATGGAGGGCGACGGGGTGCCATGGGGCAGCGAGCCCGTCTCGGGTCCCGGCCCCGGCGGCGGCGGAATGATCCG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CGAGCTGTGCCGGGGCTTCGGCCGCTACCGCCGCTACCTGGGACGGCTGCGACAGAACCTGCGCGAGACCCAGA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AGTTCTTCCGCGACATCAAGTGCTCCCACAACCACACTTGTCTCTCCTCCCTCACGGGCGGCGGCGGGGCCGAG  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  CGCGGCCCTGCAGGCGATGTCGCCGAAACCGGGCTGCAGGCGGGCCAACTGAGCTGCATTTCCTTCCCACCTAA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  GGAAGAGAAGTACCTCCAGCAGATTGTGGACTGCCTCCCTTGCATACTGATCCTCGGCCAGGATTGTAACGTCA  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AGTGCCAGCTGTTGAATCTGCTGTTGGGGGTGCAGGTGCTTCCCACCACCAAGCTGGGCAGTGAGGAGAGCTGT  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  AAGCTTCGGCGCCTCCGCTTCACCTATGGGACTCAGACTCGGGTCAGCCTGGCGCTCCCTGGACAGTATGAACT  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  AGTGCACACGCTGGTTGCTCATCAGGGCAACTGGGAGACCATCCCTGAGGAGGATCT------GGAGGTCCAAG  586
                                                              |.|.|||      |||     |||
Sbjct    1  --------------------------------------------------ATGCTCTCTTACAGGA-----AAG  19

Query  587  ----AGA--ACAATGAGGATGCTGCTCATGTTTTAGCGGAACTGGAGGTAACGATGCACCATGCTCTCTTACAG  654
                |||  ||||.|.|||                    ||.||.||   ||||.||| .|.|..||.|...||
Sbjct   20  AAGCAGAACACAAAGTGGA--------------------AAGTGCAG---ACGAGGCA-AAGGACCTGTGGAAG  69

Query  655  GAAGTGGACGTTGTGGTAGCACCATGCCAAGGCCTCCGGCCCACAGTGGATGTTCTGGGTGACTTGGTGAATGA  728
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   70  GAAGTGGACGTTGTGGTAGCACCATGCCAAGGCCTCCGGCCCACAGTGGATGTTCTGGGTGACTTGGTGAATGA  143

Query  729  TTTCTTGCCTGTGATAACCTATGCACTCCACAAAGATGAACTCTCTGAGAGGGATGAGCAAGAGCTTCAGGAAA  802
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  144  TTTCTTGCCTGTGATAACCTATGCACTCCACAAAGATGAACTCTCTGAGAGGGATGAGCAAGAGCTTCAGGAAA  217

Query  803  TCCGAAAGTATTTCTCCTTTCCTGTATTCTTTTTCAAAGTGCCGAAACTGGGCTCGGAGATAATAGACTCCTCA  876
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  218  TCCGAAAGTATTTCTCCTTTCCTGTATTCTTTTTCAAAGTGCCGAAACTGGGCTCGGAGATAATAGACTCCTCA  291

Query  877  ACCAGGAGAATGGAGAGCGAAAGATCACCGCTTTATCGCCAGCTAATTGACCTGGGCTATCTGAGCAGCAGTCA  950
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  292  ACCAGGAGAATGGAGAGCGAAAGATCACCGCTTTATCGCCAGCTAATTGACCTGGGCTATCTGAGCAGCAGTCA  365

Query  951  CTGGAACTGTGGGGCTCCTGGCCAGGATACTAAAGCTCAGAGCATGTTGGTGGAACAGAGTGAAAAGCTGAGAC  1024
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  366  CTGGAACTGTGGGGCTCCTGGCCAGGATACTAAAGCTCAGAGCATGTTGGTGGAACAGAGTGAAAAGCTGAGAC  439

Query 1025  ACTTGAGCACATTTTCTCACCAGGTGTTACAGACTCGCCTGGTGGATGCAGCCAAGGCCCTGAACCTGGTGCAC  1098
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  440  ACTTGAGCACATTTTCTCACCAGGTGTTACAGACTCGCCTGGTGGATGCAGCCAAGGCCCTGAACCTGGTGCAC  513

Query 1099  TGCCACTGCCTTGACATCTTTATTAACCAGGCATTTGACATGCAGCGGGACCTGCAGATCACTCCCAAACGTCT  1172
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  514  TGCCACTGCCTTGACATCTTTATTAACCAGGCATTTGACATGCAGCGGGACCTGCAGATCACTCCCAAACGTCT  587

Query 1173  GGAATATACTCGAAAAAAGGAGAATGAGTTGTATGAATCATTGATGAATATTGCCAACCGAAAGCAGGAGGAAA  1246
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  588  GGAATATACTCGAAAAAAGGAGAATGAGTTGTATGAATCATTGATGAATATTGCCAACCGAAAGCAGGAGGAAA  661

Query 1247  TGAAGGATATGATTGTTGAGACACTTAATACCATGAAGGAGGAACTTCTGGATGATGCTACTAACATGGAGTTT  1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  662  TGAAGGATATGATTGTTGAGACACTTAATACCATGAAGGAGGAACTTCTGGATGATGCTACTAACATGGAGTTT  735

Query 1321  AAAGACGTCATTGTCCCTGAGAATGGAGAACCAGTAGGCACCAGAGAGATCAAATGCTGCATCCGACAGATCCA  1394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  736  AAAGACGTCATTGTCCCTGAGAATGGAGAACCAGTAGGCACCAGAGAGATCAAATGCTGCATCCGACAGATCCA  809

Query 1395  GGAACTCATCATCTCCCGACTTAATCAGGCAGTGGCTAATAAGCTGATCAGCTCAGTGGATTACCTGAGGGAAA  1468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  810  GGAACTCATCATCTCCCGACTTAATCAGGCAGTGGCTAATAAGCTGATCAGCTCAGTGGATTACCTGAGGGAAA  883

Query 1469  GCTTCGTCGGAACCCTGGAACGATGTCTGCAGAGCCTGGAGAAGTCTCAGGATGTCTCAGTTCACATCACCAGT  1542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  884  GCTTCGTCGGAACCCTGGAACGATGTCTGCAGAGCCTGGAGAAGTCTCAGGATGTCTCAGTTCACATCACCAGT  957

Query 1543  AATTATCTCAAACAGATCTTAAATGCTGCCTATCATGTTGAAGTCACGTTTCACTCAGGGTCGTCAGTTACAAG  1616
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  958  AATTATCTCAAACAGATCTTAAATGCTGCCTATCATGTTGAAGTCACGTTTCACTCAGGGTCGTCAGTTACAAG  1031

Query 1617  GATGCTATGGGAGCAAATCAAACAGATCATCCAGCGCATCACATGGGTGAGCCCACCTGCCATCACTCTGGAAT  1690
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032  GATGCTATGGGAGCAAATCAAACAGATCATCCAGCGCATCACATGGGTGAGCCCACCTGCCATCACTCTGGAAT  1105

Query 1691  GGAAGAGGAAGGTGGCCCAGGAAGCCATTGAGAGCCTCAGCGCCTCCAAATTGGCTAAGAGCATTTGCAGCCAA  1764
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106  GGAAGAGGAAGGTGGCCCAGGAAGCCATTGAGAGCCTCAGCGCCTCCAAATTGGCTAAGAGCATTTGCAGCCAA  1179

Query 1765  TTCCGGACTCGGCTCAATAGTTCCCACGAGGCTTTTGCAGCCTCCTTGCGGCAGCTGGAAGCTGGCCACTCAGG  1838
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180  TTCCGGACTCGGCTCAATAGTTCCCACGAGGCTTTTGCAGCCTCCTTGCGGCAGCTGGAAGCTGGCCACTCAGG  1253

Query 1839  CCGGTTAGAGAAAACGGAAGATCTATGGCTGAGGGTTCGGAAAGATCATGCTCCCCGCCTGGCCCGCCTTTCTC  1912
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254  CCGGTTAGAGAAAACGGAAGATCTATGGCTGAGGGTTCGGAAAGATCATGCTCCCCGCCTGGCCCGCCTTTCTC  1327

Query 1913  TGGAAAGCCGTTCTTTACAGGATGTCTTGCTTCATCGTAAACCTAAACTGGGACAGGAACTGGGCCGGGGCCAG  1986
            ||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328  TGGAAAGCTGTTCTTTACAGGATGTCTTGCTTCATCGTAAACCTAAACTGGGACAGGAACTGGGCCGGGGCCAG  1401

Query 1987  TATGGTGTGGTATACCTGTGTGACAACTGGGGAGGACACTTCCCTTGTGCCCTCAAATCAGTTGTCCCTCCAGA  2060
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402  TATGGTGTGGTATACCTGTGTGACAACTGGGGAGGACACTTCCCTTGTGCCCTCAAATCAGTTGTCCCTCCAGA  1475

Query 2061  TGAGAAGCACTGGAATGATCTGGCTTTGGAATTTCACTATATGAGGTCTCTGCCGAAGCATGAGCGATTGGTGG  2134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476  TGAGAAGCACTGGAATGATCTGGCTTTGGAATTTCACTATATGAGGTCTCTGCCGAAGCATGAGCGATTGGTGG  1549

Query 2135  ATCTCCATGGTTCAGTCATTGACTACAACTATGGTGGTGGCTCCAGCATTGCTGTGCTCCTCATTATGGAGCGG  2208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550  ATCTCCATGGTTCAGTCATTGACTACAACTATGGTGGTGGCTCCAGCATTGCTGTGCTCCTCATTATGGAGCGG  1623

Query 2209  CTACACCGGGATCTCTACACAGGGCTGAAGGCTGGGCTGACCCTGGAGACACGTTTGCAGATAGCACTAGATGT  2282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624  CTACACCGGGATCTCTACACAGGGCTGAAGGCTGGGCTGACCCTGGAGACACGTTTGCAGATAGCACTAGATGT  1697

Query 2283  GGTGGAGGGAATCCGCTTCCTGCACAGCCAGGGACTTGTCCATCGTGATATCAAACTGAAAAATGTGCTGCTGG  2356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698  GGTGGAGGGAATCCGCTTCCTGCACAGCCAGGGACTTGTCCATCGTGATATCAAACTGAAAAATGTGCTGCTGG  1771

Query 2357  ATAAGCAGAACCGTGCCAAGATCACTGACTTAGGATTCTGCAAGCCAGAGGCCATGATGTCAGGCAGCATTGTG  2430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772  ATAAGCAGAACCGTGCCAAGATCACTGACTTAGGATTCTGCAAGCCAGAGGCCATGATGTCAGGCAGCATTGTG  1845

Query 2431  GGGACACCAATCCATATGGCCCCTGAACTTTTCACA--------------------------------------  2466
            ||||||||||||||||||||||||||||||||||||                                      
Sbjct 1846  GGGACACCAATCCATATGGCCCCTGAACTTTTCACAGGGAAGTACGATAATTCCGTGGATGTCTACGCTTTTGG  1919

Query 2467  --------------------------------------------------------------------------  2466
                                                                                      
Sbjct 1920  AATTCTTTTCTGGTATATCTGCTCAGGCTCTGTCAAGCTCCCTGAGGCATTTGAGAGGTGTGCTAGCAAAGACC  1993

Query 2467  -----------------------GGGGCTCGCCCAGAACGTCTTCCTGTGTTTGATGAGGAGTGCTGGCAGTTG  2517
                                   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1994  ATCTCTGGAACAATGTGCGGAGGGGGGCTCGCCCAGAACGTCTTCCTGTGTTTGATGAGGAGTGCTGGCAGTTG  2067

Query 2518  ATGGAAGCCTGTTGGGATGGCGACCCCTTGAAGAGGCCTCTCTTGGGCATTGTCCAGCCCATGCTCCAGGGCAT  2591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2068  ATGGAAGCCTGTTGGGATGGCGACCCCTTGAAGAGGCCTCTCTTGGGCATTGTCCAGCCCATGCTCCAGGGCAT  2141

Query 2592  CATGAATCGGCTCTGCAAGTCCAATTCTGAGCAGCCAAACAGAGGACTAGATGATTCTACT  2652
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2142  CATGAATCGGCTCTGCAAGTCCAATTCTGAGCAGCCAAACAGAGGACTAGATGATTCTACT  2202

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.