Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15076
Subject:
NM_011382.2
Aligned Length:
2346
Identities:
2034
Gaps:
87

Alignment

Query    1  ---------------------------------------------------------------ATGGAAAGCGC  11
                                                                           |||||||||||
Sbjct    1  ATGTCCTCTTCCTCCCCCACCGGGCAGATTGCAAGTGCGGCGGACATCAAGCAGGAGAATGGGATGGAAAGCGC  74

Query   12  CTCGGAAGGGCAGGAGGCGCACCGAGAAGTGGCGGGGGGCGCGGCGGTAGGGCTGAGCCCCCCGGCTCCAGCCC  85
            |||||||||.|||||||||||||||||||||||||||||||||||||..|||||||||||||||||||||||.|
Sbjct   75  CTCGGAAGGACAGGAGGCGCACCGAGAAGTGGCGGGGGGCGCGGCGGCTGGGCTGAGCCCCCCGGCTCCAGCTC  148

Query   86  CTTTTCCCCTGGAGCCGGGGGACGCCGCGACCGCTGCCGCCAGGGTGAGCGGAGAGGAAGGGGCAGTGGCGGCG  159
            ||||.||||||||||||||||||||||||   ||||||.|||||||.|||.|.||||||||||||         
Sbjct  149  CTTTCCCCCTGGAGCCGGGGGACGCCGCG---GCTGCCTCCAGGGTAAGCCGGGAGGAAGGGGCA---------  210

Query  160  GCGGCGGCCGGAGCGGCGGCGGATCAGGTACAACTCCACTCGGAACTTCTGGGCAGGCACCACCACGCCGCCGC  233
            ||||||||.|||   |||||.|||||||||||||||||||||||||||||||||||||||||.||      |||
Sbjct  211  GCGGCGGCGGGA---GCGGCAGATCAGGTACAACTCCACTCGGAACTTCTGGGCAGGCACCAGCA------CGC  275

Query  234  CGCCGCCGCGCAGACCCCGCTGGCCTTCTCGCCCGACCACGTCGCCTGCGTGTGCGAGGCACTGCAGCAGGGGG  307
            .||||||||||||.||||.||||||||||||||.|||||.||||||||||||||||||||..||||||||||||
Sbjct  276  AGCCGCCGCGCAGCCCCCACTGGCCTTCTCGCCGGACCATGTCGCCTGCGTGTGCGAGGCGTTGCAGCAGGGGG  349

Query  308  GCAACCTGGACCGCCTGGCCCGGTTCCTGTGGTCCCTGCCCCAGAGCGACCTGCTACGTGGCAACGAGAGCCTG  381
            |||||||||||||||||||||||||.||.||||||||||||||||||||.|||||||||||||||||||||||.
Sbjct  350  GCAACCTGGACCGCCTGGCCCGGTTTCTTTGGTCCCTGCCCCAGAGCGATCTGCTACGTGGCAACGAGAGCCTT  423

Query  382  CTGAAGGCGCGGGCGCTCGTGGCCTTCCACCAGGGCATCTACCCCGAGCTCTACAGCATCCTCGAGAGCCACAG  455
            |||||||||||.||||||||||||||||||||||||||||||||.|||.|.|||||||||||||||||||||||
Sbjct  424  CTGAAGGCGCGAGCGCTCGTGGCCTTCCACCAGGGCATCTACCCTGAGTTGTACAGCATCCTCGAGAGCCACAG  497

Query  456  CTTCGAGTCGGCCAACCACCCGCTGCTGCAGCAGCTCTGGTACAAGGCGCGCTACACCGAGGCCGAGCGAGCCC  529
            ||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct  498  CTTCGAGTCGGCCAACCATCCGCTGCTGCAGCAGCTCTGGTACAAGGCGCGCTACACCGAGGCCGAGCGAGCGC  571

Query  530  GCGGCCGGCCGCTGGGAGCCGTAGACAAGTACCGGCTGCGCAGGAAATTCCCCCTGCCCCGCACCATCTGGGAC  603
            ||||||||||||||||.|||||.||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct  572  GCGGCCGGCCGCTGGGCGCCGTGGACAAGTACCGGCTGCGCAGGAAATTCCCCTTGCCCCGCACCATCTGGGAC  645

Query  604  GGCGAGGAGACGGTGTATTGTTTCAAGGAGAAGTCGCGCAACGCGCTCAAGGAGCTCTACAAGCAGAATCGCTA  677
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  646  GGCGAGGAGACGGTGTATTGTTTCAAGGAGAAGTCGCGCAACGCGCTCAAGGAGCTCTACAAGCAGAATCGCTA  719

Query  678  CCCTTCGCCCGCCGAGAAGCGGCACCTGGCCAAGATCACCGGCCTCTCCCTCACCCAGGTCAGCAACTGGTTCA  751
            |||.|||||.||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  720  CCCCTCGCCGGCTGAGAAGCGGCACCTGGCCAAGATCACCGGCCTCTCCCTCACCCAGGTCAGCAACTGGTTCA  793

Query  752  AGAACCGCCGGCAGCGCGACAGGAACCCCTCCGAGACCCAGTCCAAAAGTGAGTCAGATGGCAACCCCAGCACT  825
            |||||||.||||||||.|||.|.||||||||||||||||||||||||||.||.||.||||||||||||||.||.
Sbjct  794  AGAACCGGCGGCAGCGTGACCGAAACCCCTCCGAGACCCAGTCCAAAAGCGAATCGGATGGCAACCCCAGTACC  867

Query  826  GAAGATGAATCCAGCAAGGGACATGAGGATTTATCTCCTCACCCACTCTCCAGTTCATCTGATGGCATCACCAA  899
            ||.|||||||||||||||||||||||||||||.||||||||.|||||.||..|..|||||||||||.|||||||
Sbjct  868  GAGGATGAATCCAGCAAGGGACATGAGGATTTGTCTCCTCATCCACTTTCAGGCGCATCTGATGGCGTCACCAA  941

Query  900  CCTCAGCCTTTCCAGTCATATGGAGCCAGTATATATGCAACAAATTGGAAATGCTAAGATATCATTAAGCTCTT  973
            |||||||||.||.||.||..||||||||||||||||||||||||||||||||||||||||||||.|||||||.|
Sbjct  942  CCTCAGCCTCTCTAGCCACGTGGAGCCAGTATATATGCAACAAATTGGAAATGCTAAGATATCACTAAGCTCGT  1015

Query  974  CTGGAGTTCTGTTGAATGGAAGCTTGGTACCTGCAAGTACTTCACCTGTCTTCCTTAATGGAAATTCTTTTATT  1047
            ||||||||.||||||||||||||||.|||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct 1016  CTGGAGTTTTGTTGAATGGAAGCTTAGTACCTGCAAGTACTTCACCTGTCTTCCTTAATGGCAATTCTTTTATT  1089

Query 1048  CAGGGACCCAGTGGAGTTATCCTTAATGGATTAAATGTGGGAAATACACAGGCAGTGGCATTGAACCCACCAAA  1121
            |||||||.||.|||||||||||||||||||.|.||||||||||||||||||.|||||.||.||||||||||.||
Sbjct 1090  CAGGGACACAATGGAGTTATCCTTAATGGACTGAATGTGGGAAATACACAGACAGTGTCACTGAACCCACCCAA  1163

Query 1122  AATGTCATCAAACATTGTGAGCAATGGTATATCCATGACTGACATACTGGGGTCTACTTCCCAGGACGTGAAGG  1195
            ||||||.||||||||||||.|||||||.|||.|||||||.|||||.|||||.|||||.||||||||.|||||.|
Sbjct 1164  AATGTCTTCAAACATTGTGGGCAATGGCATAGCCATGACAGACATCCTGGGATCTACCTCCCAGGATGTGAAAG  1237

Query 1196  AATTCAAAGTCCTCCAGAGTTCTGCT---AACTCAGCAACCACCACGTCCTACAGCCCCAGTGTCCCTGTCTCA  1266
            ||||||||||||||||||||||||||   |||||||||.|||||||.|||||||||||.||||.||||||.|||
Sbjct 1238  AATTCAAAGTCCTCCAGAGTTCTGCTGTGAACTCAGCAGCCACCACCTCCTACAGCCCTAGTGCCCCTGTGTCA  1311

Query 1267  TTCCCAGGCCTGATACCCAGCACTGAGGTGAAAAGAGAAGGCATTCAAACAGTGGCTTCCCAAGATGGAGGGTC  1340
            ||||||||.|||||||||.|||||||.||||||||||||||||||||.||||||||.|||||.||.||.||.||
Sbjct 1312  TTCCCAGGGCTGATACCCTGCACTGAAGTGAAAAGAGAAGGCATTCAGACAGTGGCCTCCCAGGACGGTGGCTC  1385

Query 1341  TGTAGTGACTTTTACTACACCAGTGCAAATTAACCAGTATGGCATTGTCCAGATCCCCAATTCCGGAGCAAACA  1414
            |||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||.|||||.|||.
Sbjct 1386  TGTGGTGACTTTTACTACACCCGTGCAAATTAACCAGTATGGCATTGTCCAGATCCCTAATTCTGGAGCCAACG  1459

Query 1415  GCCAGTTCCTTAATGGGAGCATTGGATTCTCTCCACTGCAGCTGCCCCCTGTGTCAGTGGCAGCTTCACAAGGT  1488
            ||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.|||||||||||||||
Sbjct 1460  GCCAGTTCCTTAATGGGAGCATTGGATTCTCTCCACTGCAGCTGCCTCCTGTCTCAGTAGCAGCTTCACAAGGT  1533

Query 1489  AATATCTCAGTAAGCTCAAGCACTTCAGATGGAAGCACATTTACAAGTGAGTCTACCACAGTCCAGCAAGGAAA  1562
            |||.|.|||||.|.|.||||||||||.||.|||||||||||||||||||||.|..|||||||||||||.||.||
Sbjct 1534  AATCTTTCAGTTACCCCAAGCACTTCGGACGGAAGCACATTTACAAGTGAGCCAGCCACAGTCCAGCACGGTAA  1607

Query 1563  GGTTTTCTTGAGCTCTCTTGCTCCCAGTGCAGTGGTATACACGGTTCCTAATACAGGCCAGACTATAGGATCTG  1636
            ..|||||.|||||.|||||.|.||||||||||||||||||||.|||||||||.|||||||||||.|||||.|||
Sbjct 1608  ACTTTTCCTGAGCCCTCTTACCCCCAGTGCAGTGGTATACACCGTTCCTAATTCAGGCCAGACTGTAGGAGCTG  1681

Query 1637  TGAAACAGGAAGGCTTGGAAAGGAGCCTGGTATTTTCTCAGTTGATGCCTGTCAATCAGAATGCACAAGTAAAT  1710
            ||||||||||||||||.|||||..|||||||.||||||||||||||||||||||||||.|.|||||||||||||
Sbjct 1682  TGAAACAGGAAGGCTTAGAAAGAGGCCTGGTCTTTTCTCAGTTGATGCCTGTCAATCACAGTGCACAAGTAAAT  1755

Query 1711  GCAAACCTGTCTTCTGAAAACATCTCGGGGAGTGGCCTGCATCCACTGGCCTCCTCATTAGTTAATGTATCTCC  1784
            ||||.|||||||||.|||||..||||.|||||||||||.|||||.|||.||||.||.||.||||||||.||..|
Sbjct 1756  GCAAGCCTGTCTTCGGAAAATCTCTCTGGGAGTGGCCTCCATCCTCTGACCTCGTCGTTGGTTAATGTGTCCGC  1829

Query 1785  AACTCACAATTTTTCTCTCAGTCCCTCTACACTACTAAATCCCACTGAGCTAAACCGCGACATTGCCGATAGCC  1858
            ..|.|||..||||||.||.|..|||.||||||||||.||||||||||||||.||||..|||.|||||||.||||
Sbjct 1830  CGCCCACGGTTTTTCCCTGACCCCCCCTACACTACTTAATCCCACTGAGCTCAACCCTGACCTTGCCGAGAGCC  1903

Query 1859  AACCAATGTCTGCACCGGTGGCAAGCAAATCTACTGTGACATCTGTCAGCAACACTAACTATGCAACTCTTCAG  1932
            |.||..||||||||||.|||||||||||||.|||||||.||||||||||||||||||||||||||||.||||||
Sbjct 1904  AGCCCGTGTCTGCACCTGTGGCAAGCAAATGTACTGTGTCATCTGTCAGCAACACTAACTATGCAACCCTTCAG  1977

Query 1933  AACTGCTCCCTTATTACTGGTCAAGACCTATTGTCAGTCCCTATGACTCAGGCTGCCCTTGGGGAAATAGTTCC  2006
            |||||.|||||||||.|.||.||||||||||||||.|.|||.|||||.|||||||||||.||.||.||.||.||
Sbjct 1978  AACTGTTCCCTTATTCCGGGGCAAGACCTATTGTCCGGCCCGATGACCCAGGCTGCCCTGGGTGAGATCGTACC  2051

Query 2007  TACAGCTGAAGATCAGGTAGGTCACCCCTCCCCAGCAGTACATCAGGATTTTGTCCAAGAACATCGTTTGGTTC  2080
            .|||||||||||.|||||..|.|||.||||..|||||||.||.||||||||||||..||||||.||.|||||||
Sbjct 2052  CACAGCTGAAGAGCAGGTGAGCCACGCCTCAACAGCAGTCCACCAGGATTTTGTCAGAGAACAGCGCTTGGTTC  2125

Query 2081  TGCAATCGGTAGCTAACATGAAAGAGAATTTCTTATCAAATTCTGAGAGCAAAGCAACAAGTAGCTTAATGATG  2154
            ||||.||.||..|||||||.|||||||||||||||..|||||||||||.|||||||||||..|.||||||||||
Sbjct 2126  TGCAGTCAGTCCCTAACATAAAAGAGAATTTCTTACAAAATTCTGAGAACAAAGCAACAAACAACTTAATGATG  2199

Query 2155  CTGGACTCTAAATCCAAGTATGTCTTAGATGGCATGGTTGATACTGTCTGTGAAGACCTGGAAACAGACAAAAA  2228
            .|.|||||.|||||||||||.|||.|.||.|||||||||||..|.|.||||||||||||||.|||.||||||||
Sbjct 2200  TTAGACTCGAAATCCAAGTACGTCCTGGACGGCATGGTTGAAGCCGGCTGTGAAGACCTGGGAACGGACAAAAA  2273

Query 2229  AGAGCTTGCCAAGCTCCAGACTGTCCAGCTGGATGAAGATATGCAAGACTTA  2280
            ||||||.|||||||||||.||.||||||.||||||||||.||||||||||||
Sbjct 2274  AGAGCTGGCCAAGCTCCAAACCGTCCAGTTGGATGAAGACATGCAAGACTTA  2325

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