Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15300
Subject:
NM_001278300.2
Aligned Length:
3427
Identities:
1103
Gaps:
2270

Alignment

Query    1  ATGCAATTCCCCTCGCCTCCAGCCGCGAGGAGCTCCCCGGCGCCGCAGGCAGCGTCCTCCTCCGAAGCAGCTGC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  ACCTGCAACTGGGCAGCCTGGACCCTCGTGCCCTGTTCCCGGGACCTCGCGCAGGGGGCGCCCCGGGACACCCC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CTGCGGGCCGGGTGGAGGAGGAAGAGGAGGAGGAGGAAGAAGACGTGGACAAGGACCCCCATCCTACCCAGAAC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  ACCTGCCTGCGCTGCCGCCACTTCTCTTTAAGGGAGAGGAAAAGAGAGCCTAGGAGAACCATGGGGGGCTGCGA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  AGTCCGGGAATTTCTTTTGCAATTTGGTTTCTTCTTGCCTCTGCTGACAGCGTGGCCAGGCGACTGCAGTCACG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  TCTCCAACAACCAAGTTGTGTTGCTTGATACAACAACTGTACTGGGAGAGCTAGGATGGAAAACATATCCATTA  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  AATGGGTGGGATGCCATCACTGAAATGGATGAACATAATAGGCCCATTCACACATACCAGGTATGTAATGTAAT  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  GGAACCAAACCAAAACAACTGGCTTCGTACAAACTGGATCTCCCGTGATGCAGCTCAGAAAATTTATGTGGAAA  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  TGAAATTCACACTAAGGGATTGTAACAGCATCCCATGGGTCTTGGGGACTTGCAAAGAAACATTTAATCTGTTT  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  TATATGGAATCAGATGAGTCCCACGGAATTAAATTCAAGCCAAACCAGTATACAAAGATCGACACAATTGCTGC  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  TGATGAGAGTTTTACCCAGATGGATTTGGGTGATCGCATCCTCAAACTCAACACTGAAATTCGTGAGGTGGGGC  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  CTATAGAAAGGAAAGGATTTTATCTGGCTTTTCAAGACATTGGGGCGTGCATTGCCCTGGTTTCAGTCCGTGTT  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  TTCTACAAGAAATGCCCCTTCACTGTTCGTAACTTGGCCATGTTTCCTGATACCATTCCAAGGGTTGATTCCTC  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  CTCTTTGGTTGAAGTACGGGGTTCTTGTGTGAAGAGTGCTGAAGAGCGTGACACTCCTAAACTGTATTGTGGAG  1036
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1037  CTGATGGAGATTGGCTGGTTCCTCTTGGAAGGTGCATCTGCAGTACAGGATATGAAGAAATTGAGGGTTCTTGC  1110
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1111  CATGCTTGCAGACCAGGATTCTATAAAGCTTTTGCTGGGAACACAAAATGTTCTAAATGTCCTCCACACAGTTT  1184
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1185  AACATACATGGAAGCAACTTCTGTCTGTCAGTGTGAAAAGGGTTATTTCCGAGCTGAAAAAGACCCACCTTCTA  1258
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1259  TGGCATGTACCAGGCCACCTTCAGCTCCTAGGAATGTGGTTTTTAACATCAATGAAACAGCCCTTATTTTGGAA  1332
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1333  TGGAGCCCACCAAGTGACACAGGAGGGAGAAAAGATCTCACATACAGTGTAATCTGTAAGAAATGTGGCTTAGA  1406
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1407  CACCAGCCAGTGTGAGGACTGTGGTGGAGGACTCCGCTTCATCCCAAGACATACAGGCCTGATCAACAATTCCG  1480
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1481  TGATAGTACTTGACTTTGTGTCTCACGTGAATTACACCTTTGAAATAGAAGCAATGAATGGAGTTTCTGAGTTG  1554
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1555  AGTTTTTCTCCCAAGCCATTCACAGCTATTACAGTGACCACGGATCAAGATGCACCTTCCCTGATAGGTGTGGT  1628
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1629  AAGGAAGGACTGGGCATCCCAAAATAGCATTGCCCTATCATGGCAAGCACCTGCTTTTTCCAATGGAGCCATTC  1702
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1703  TGGACTACGAGATCAAGTACTATGAGAAAGAACATGAGCAGCTGACCTACTCTTCCA---CAAGGTCCAAAGCC  1773
                                 ||  |||||                  |||| ||||   ||||...||||   
Sbjct    1  ---------------------AT--GAAAG------------------ACTC-TCCATTTCAAGTGACAAA---  29

Query 1774  CCCAGTGTCATCATCACAGGTCTTAAGCCAGCCACCAAATATGTATTTCACATCCGAGTGAGAACTGCGACAGG  1847
               |.|||       ||.|| |||||                                |||.||.||.|||   
Sbjct   30  ---ACTGT-------ACTGG-CTTAA--------------------------------TGAAAAGTGGGAC---  57

Query 1848  ATACAGTGGCTACAGTCAGAAATTTGAATTTGAAACAGGAGATGAAACTTCTGACATGGCAGCAGAACAAGGAC  1921
             |..|.||.|| |||                                |||||||||||||||||||||||||||
Sbjct   58  -TTTATTGCCT-CAG--------------------------------CTTCTGACATGGCAGCAGAACAAGGAC  97

Query 1922  AGATTCTCGTGATAGCCACCGCCGCTGTTGGCGGATTCACTCTCCTCGTCATCCTCACTTTATTCTTCTTGATC  1995
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   98  AGATTCTCGTGATAGCCACCGCCGCTGTTGGCGGATTCACTCTCCTCGTCATCCTCACTTTATTCTTCTTGATC  171

Query 1996  ACTGGGAGATGTCAGTGGTACATAAAAGCCAAGATGAAGTCAGAAGAGAAGAGAAGAAACCACTTACAGAATGG  2069
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  172  ACTGGGAGATGTCAGTGGTACATAAAAGCCAAGATGAAGTCAGAAGAGAAGAGAAGAAACCACTTACAGAATGG  245

Query 2070  GCATTTGCGCTTCCCGGGAATTAAAACTTACATTGATCCAGATACATATGAAGACCCATCCCTAGCAGTCCATG  2143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  246  GCATTTGCGCTTCCCGGGAATTAAAACTTACATTGATCCAGATACATATGAAGACCCATCCCTAGCAGTCCATG  319

Query 2144  AATTTGCAAAGGAGATTGATCCCTCAAGAATTCGTATTGAGAGAGTCATTGGGGCAGGTGAATTTGGAGAAGTC  2217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  320  AATTTGCAAAGGAGATTGATCCCTCAAGAATTCGTATTGAGAGAGTCATTGGGGCAGGTGAATTTGGAGAAGTC  393

Query 2218  TGTAGTGGGCGTTTGAAGACACCAGGGAAAAGAGAGATCCCAGTTGCCATTAAAACTTTGAAAGGTGGCCACAT  2291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  394  TGTAGTGGGCGTTTGAAGACACCAGGGAAAAGAGAGATCCCAGTTGCCATTAAAACTTTGAAAGGTGGCCACAT  467

Query 2292  GGATCGGCAAAGAAGAGATTTTCTAAGAGAAGCTAGTATCATGGGCCAGTTTGACCATCCAAACATCATTCGCC  2365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  468  GGATCGGCAAAGAAGAGATTTTCTAAGAGAAGCTAGTATCATGGGCCAGTTTGACCATCCAAACATCATTCGCC  541

Query 2366  TAGAAGGGGTTGTCACCAAAAGATCCTTCCCGGCCATTGGGGTGGAGGCGTTTTGCCCCAGCTTCCTGAGGGCA  2439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  542  TAGAAGGGGTTGTCACCAAAAGATCCTTCCCGGCCATTGGGGTGGAGGCGTTTTGCCCCAGCTTCCTGAGGGCA  615

Query 2440  GGGTTTTTAAATAGCATCCAGGCCCCGCATCCAGTGCCAGGGGGAGGATCTTTGCCCCCCAGGATTCCTGCTGG  2513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  616  GGGTTTTTAAATAGCATCCAGGCCCCGCATCCAGTGCCAGGGGGAGGATCTTTGCCCCCCAGGATTCCTGCTGG  689

Query 2514  CAGACCAGTAATGATTGTGGTGGAATATATGGAGAATGGATCCCTAGACTCCTTTTTGCGGAAGCATGATGGCC  2587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  690  CAGACCAGTAATGATTGTGGTGGAATATATGGAGAATGGATCCCTAGACTCCTTTTTGCGGAAGCATGATGGCC  763

Query 2588  ACTTCACAGTCATCCAGTTGGTCGGAATGCTCCGAGGCATTGCATCAGGCATGAAGTATCTTTCTGATATGGGT  2661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  764  ACTTCACAGTCATCCAGTTGGTCGGAATGCTCCGAGGCATTGCATCAGGCATGAAGTATCTTTCTGATATGGGT  837

Query 2662  TATGTTCATCGAGACCTAGCGGCTCGGAATATACTGGTCAATAGCAACTTAGTATGCAAAGTTTCTGATTTTGG  2735
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  838  TATGTTCATCGAGACCTAGCGGCTCGGAATATACTGGTCAATAGCAACTTAGTATGCAAAGTTTCTGATTTTGG  911

Query 2736  TCTCTCCAGAGTGCTGGAAGATGATCCAGAAGCTGCTTATACAACAACTGGTGGAA-----AAATCCCCATAAG  2804
            |||||||||||||||||||||||||||||||||||||||||||||||||.|    |     |||||.|.|.||.
Sbjct  912  TCTCTCCAGAGTGCTGGAAGATGATCCAGAAGCTGCTTATACAACAACTAG----ACCCACAAATCACAACAAA  981

Query 2805  GTGGACAGCCCCAGAAGCCATC------GCCTACAGAAAAT--TCTCCTCAGCAAGC------GATGCA-----  2859
            |              |||.|||      |..||.||||.||  |||    .|.||||      || |||     
Sbjct  982  G--------------AGCAATCAGAACTGGTTAAAGAAGATGGTCT----GGAAAGCTTGTGTGA-GCAGTGCG  1036

Query 2860  --TGGAGCTATGG-CATTGTCATGTGGGA--GGTCATGTCCTATGGAGAGAGACCTTATTGGGAAATGTCTAAC  2928
              |..||||.||| .||.||..|   |||  ||||  .||.|.|||| |||||                  |||
Sbjct 1037  AGTCCAGCTCTGGTTATGGTACT---GGACTGGTC--CTCATGTGGA-AGAGA------------------AAC  1086

Query 2929  CAAGATGTCATTCTGTCCATTGAAGAAGGGTACAGACTTCCAGCTCCCATGGG-----CTGTCCAGCATCTCTA  2997
                                   |||||||                |||||||     .||.||||        
Sbjct 1087  -----------------------AGAAGGG----------------CCATGGGAGCCAGTGGCCAG--------  1113

Query 2998  CACCAGCTGATGCTCCACTGCTGGCAGAAGGAGAGAAATCACAGACCAAAATTTACTGACATTGTCAGCTTCCT  3071
             |||||  .|.|   ||.|| ||.||     |||||.||.||...|||      ||.|||.|      ||||  
Sbjct 1114  -ACCAG--AAAG---CAATG-TGACA-----AGAGAGATAACCCTCCA------ACAGACCT------CTTC--  1161

Query 3072  TGACAAACTGATCCGAAATCCCAGTGCCCTTCACACCCTGGTGGAGGACATCCTTGTAATGCCAGAGTCCCCTG  3145
               ||||||    |.||         |.|||.|| |.|||.|       ||.| ||.|                
Sbjct 1162  ---CAAACT----CTAA---------CACTTAAC-CTCTGCT-------ATTC-TGCA----------------  1194

Query 3146  GTGAAGTTCCGGAATATCCTTTGTTTGTCACAGTTGGTGACTGGCTAGATTCTATAAAGATGGGGCAATACAAG  3219
                                                                                      
Sbjct 1195  --------------------------------------------------------------------------  1194

Query 3220  AATAACTTCGTGGCAGCAGGGTTTACAACATTTGACCTGATTTCAAGAATGAGCATTGATGACATTAGAAGAAT  3293
                                                                                      
Sbjct 1195  --------------------------------------------------------------------------  1194

Query 3294  TGGAGTCATACTTATTGGACACCAGAGACGAATAGTCAGCAGCATACAGACTTTACGTTTACACATGATGCACA  3367
                                                                                      
Sbjct 1195  --------------------------------------------------------------------------  1194

Query 3368  TACAGGAGAAGGGATTTCATGTA  3390
                                   
Sbjct 1195  -----------------------  1194

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