Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15336
Subject:
XR_388248.2
Aligned Length:
2256
Identities:
800
Gaps:
1325

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CCTTTACAGGACCCTCGCGACCCCTAGACAAGGCCCCGCCCCCGGTGCGCCGACCCCTCCCTCATCGTGGACTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACCGCCTGAGCCTAGGAGGGGCTGTGCCGCAGCCAATGGGAAAGCGGCGTGGCGAGGGTGGCGGCGGTTGTGAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCGCCAAAGCGTCCAATCAGCGGCGAGCGCGGGGGCGGGCGGTGACGCTGGGCTCTCCGCGTGCAGCGCTGTAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGGAGCGAGCGCCGCGGCCCCCTATAGCAGTCGCCTGCCGTCAGCCTCCCGCGCTCGTCTCTCGTTACTGCTGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTGACGTCCATTGCTGCCTCTCCCCGCCGTCGCCGACGTCGCCTCCCCGCGCGCTCCCACAACCGCCGCCCGGC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CGGTCAGTGAAGCCGGCGAGCCATTCCCCGCGCCGGCCCCCAGAGGCGGGCATCCAGCCGGACCCTGAGTGTGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCCTCTCGTGCTGTGGCCGCCCGCGCCTTCTCGGCCGCTTGTCCAGCATGAAAACCAAGTTCTGCACCGGGGGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAGGCCGAGCCGTCGCCTCTCGGGCTGCTGCTGAGCTGCGGTGGCAACGCTGCCCCGACGCCCGGCGTAGGGCA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCAGCGGGACGCCGCAGGCGAGCTGGAGTCCAAGCAGCTTGGTGGCCGAACCCAACCTCTCGCGCTGCCGCCGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CGCCGCCGCCGCCCCTGCCGCTGCCCCCGCCGCCATCACCGCCGCTAGCGGACGAACAACCCGAGCCCCGGACC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AGGCGCAGGGCCTACCTGTGGTGTAAGGAATTCCTGCCCGGAGCCTGGCGAGGCCTTCGCGAGGACCAGTTCCA  814

Query    1  -------------------------------ATGCTGTTCCAGTGCTCCCTACCTGACACCACAGCCACCCTTG  43
                                           ||||||||||||||||||||.||.|||.|||.|||||.|.|||
Sbjct  815  CATCAGTGTCATCAGGGGTGGTCTCAGTAACATGCTGTTCCAGTGCTCCCTGCCAGACTCCATAGCCAGCGTTG  888

Query   44  GTGATGAGCCTCGGAAAGTGCTCCTGCGGCTGTATGGAGCGATTTTGCAGATG---------------------  96
            |.|||||||||||||||||||||.|||||||.|||||.||.||.||..|||||                     
Sbjct  889  GCGATGAGCCTCGGAAAGTGCTCTTGCGGCTCTATGGGGCAATCTTAAAGATGGTGTTTTTGATAAAGCTGTGG  962

Query   97  ---------------------------------------------------------------GGGGCTGAGGC  107
                                                                           |||||||||||
Sbjct  963  AATGGCAAGAGGTCCTGTAATAAAGAGGGATCCGAACAAGCTCAGAATGAAAATGAATTTCAAGGGGCTGAGGC  1036

Query  108  CATGGTTCTGGAGAGCGTTATGTTTGCCATTCTCGCAGAGAGGTCACTTGGGCCAAAACTCTATGGCATCTTTC  181
            .||||||||||||||.|||||||||||||||||.||||||||||||||||||||||||||||.|||||||||||
Sbjct 1037  GATGGTTCTGGAGAGTGTTATGTTTGCCATTCTTGCAGAGAGGTCACTTGGGCCAAAACTCTTTGGCATCTTTC  1110

Query  182  CCCAAGGCCGACTGGAGCAGTTCATCCCGAGCCGGCGATTAGATACTGAAGAATTAAGTTTGCCAGATATTTCT  255
            ||||||||||||||||||||||.|||||||||||||||||.||.||||||||.|||.||||.||||||||||||
Sbjct 1111  CCCAAGGCCGACTGGAGCAGTTTATCCCGAGCCGGCGATTGGACACTGAAGAGTTACGTTTACCAGATATTTCT  1184

Query  256  GCAGAAATCGCCGAGAAAATGGCTACATTTCATGGTATGAAAATGCCATTCAATAAGGAACCAAAATGGCTTTT  329
            ||||||||.||.|||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GCAGAAATAGCTGAGAAAATGGCCACATTTCATGGTATGAAAATGCCATTCAATAAGGAACCAAAATGGCTTTT  1258

Query  330  TGGCACAATGGAAAAGTATCTAAAGGAAGTGCTGAGAATTAAATTTA-CTGAGGAATCCAGAATTAAAAAGCTC  402
            |||.|||||||||||.||.||.||..||||.||.|||.|.|||||.| |.| |||..|||||.||.|..|.||.
Sbjct 1259  TGGAACAATGGAAAAATACCTGAATCAAGTACTAAGACTCAAATTCAGCAG-GGAGGCCAGAGTTCAGCAACTG  1331

Query  403  CACAAATTGCTCAGTTACAATCTGCC-CTTGGAACTGGAAAACCTGAGATCATTGCTTGAATCTACTCCATCTC  475
            |||||..|.|||..||||||.||||| ||| ||.||.||.||||||||.||||||||..|.|.||||..|||||
Sbjct 1332  CACAAGATCCTCTCTTACAACCTGCCTCTT-GAGCTCGAGAACCTGAGGTCATTGCTGCAGTATACTAGATCTC  1404

Query  476  CAGTTGTATTTTGTCATAATGACTGTCAAGAAGGTAATATCTTGTTGCTGGAAGGCCGAGAGAATTCTGAAAAA  549
            |||||||||||||||||||||||||||||||||||||||||||.|||.|||||||||..|||||.|||||||..
Sbjct 1405  CAGTTGTATTTTGTCATAATGACTGTCAAGAAGGTAATATCTTATTGTTGGAAGGCCAGGAGAACTCTGAAAGG  1478

Query  550  CAGAAACTGATGCTCATTGATTTCGAATACAGCAGTTACAATTACAGGGGATTCGACATTGGAAATCACTTCTG  623
            |.|||.||||||||.|||||.||.||.||||||||||||||||||||||||||.||||||||||||||.|||||
Sbjct 1479  CGGAAGCTGATGCTTATTGACTTTGAGTACAGCAGTTACAATTACAGGGGATTTGACATTGGAAATCATTTCTG  1552

Query  624  TGAGTGGATGTATGATTATAGCTATGAAAAATACCCTTTTTTCAGAGCAANNNNCCGGAAGTATCCCACCAAGA  697
            |||.||||||||||||||||.||||||.||.||.|||||.||||||||.|.....|.|||||||||..||...|
Sbjct 1553  TGAATGGATGTATGATTATACCTATGAGAAGTATCCTTTCTTCAGAGCGAACATTCAGAAGTATCCTTCCCGAA  1626

Query  698  AACAACAGCTCCATTTTATTTCCAGTTACTTGCCTGCATTCCAAAATGACTTTGAAAACCTCAGTACTGAAGAA  771
            |||||                 ||||||||||.||.|||||||||||||.|||||||.||||||||.||||||.
Sbjct 1627  AACAA-----------------CAGTTACTTGACTACATTCCAAAATGATTTTGAAAGCCTCAGTAGTGAAGAG  1683

Query  772  AAATCCATTATAAAAGAAGAAATGTTGCTTGAAGTTAATAGGTTTGCCCTTGCATCTCATTTCCTCTGGGGACT  845
            .|.|....||.|||||||||.||||||||||||||.||.||.|||||.|||||.||||||||||||||||||||
Sbjct 1684  CAGTTTGCTACAAAAGAAGACATGTTGCTTGAAGTCAACAGATTTGCTCTTGCCTCTCATTTCCTCTGGGGACT  1757

Query  846  GTGGTCCATTGTACAAGCCAAGATTTCATCTATTGAATTTGGGTACATGNNCNACGCCCAAGCAAGGTTTGATG  919
            .||||||||||||||.||||||||.|||||.||||||||||||||||||....|.||||||||.||.||.||.|
Sbjct 1758  TTGGTCCATTGTACAGGCCAAGATCTCATCCATTGAATTTGGGTACATGGAATATGCCCAAGCCAGATTCGAGG  1831

Query  920  CCTATTTCCAGTTACTTG-CCNGNAGAGGAAGCTTGGGGTG---------------------------------  959
            ||||.|         ||| ||.|.|||||||||||||||||                                 
Sbjct 1832  CCTACT---------TTGACCAGAAGAGGAAGCTTGGGGTGTGAATGGGGTGGCTCCATTCTTCACCACTGGAC  1896

Query  960  --------------------------------------------------------------------------  959
                                                                                      
Sbjct 1897  TGCGGGAGGCGGCTGCACCAGGCCCTCAGTGGAGCGCTGCTGTGACCACTGCCCTGGGCAGAAGGCCTGGATGT  1970

Query  960  --------------------------------------------------------------------------  959
                                                                                      
Sbjct 1971  CTCACTACTGAGCACCGATGTGTATGATACTACAGACTATATTAAAGTGGAGTAACATTTCTTTCATCTTTGTT  2044

Query  960  --------------------------------------------------------------------------  959
                                                                                      
Sbjct 2045  TACACTCTCACTAGGACTCTGAACCATGATTGGAAGCAGAAATATAGTACGATAGTGCAATAGCTCAGAACCCG  2118

Query  960  --------------------------------------------------------------------------  959
                                                                                      
Sbjct 2119  CCTAAACTGAAGGCCTTTTGGCTGCATGGCTACAGCTTTCAGCCACTTACGGCCCCAGCTGGACAGAGCAGTGC  2192

Query  960  ------------------------------------  959
                                                
Sbjct 2193  TGTGTGGGTACTCCAAGTGCTGACTTAGGATATTAA  2228

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