Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15496
- Subject:
- XR_001740145.2
- Aligned Length:
- 5728
- Identities:
- 1028
- Gaps:
- 4700
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTCTTTTCACTGCAGCTGAATGAGTTGTGGCGCCCACAATGCTCCCATGACAAGGAGCTGACAAGTTCCATTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCGTCGCGGGCATCTTGGAATCATGACTCCCACAATGCCTTGGGCACTTGGTCGACAGTGGGGCCGCCTCTGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAAAAAAATGTGAGAGGTTGGTACTAAGAAGTGCCTTTCCTGACGTCTCTGCTGCTTGGAACCGCTTCTAGAGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGTCTCTGCTTTTGCCTTGCTTGCTGCCAGCTAGACTGTGACGACAGCACATCCACCCTCCACCTCTAGCCCAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACACCCCCATTTCTACTTATAATCAAGAGAAAAGCTCTAAGTATCTGGCATTGCCCTAGGCTGCTTTAGTGTTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAAGAAAAGTTTGCTGAAAAAGTAAGATATCTTCTGCCAGGAAATCAAGGAGGAAAAAAAAAATCATTTTCTCG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTTGCTCTAAACTGCTGCATCTGTCTATGCCAAACTAATCAATACCGATTGCACCACCAAACTCCATTGCAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATTCAGCTGTGAGGAGATTCCCTTTCAGACAACTTTGCTGAAAGCAGCTTGGAAATTCGGTGTCGAAGGGTCTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCACGTTTTCATGCTTGCATTTTGGGCTCCAAATTGGCACTGGGAAGGGGTTACTGAGAGCACAAGGCTGATAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAGGCCCTACTTTTAAACGTTCATCTACTTACAATCCTAGTATTTCTCTAAAAACCAAAACCTCTTTGAATTAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAGTTTCATGCTGTGAATTTCTAGTGGGAGATCTTTTCCTTGATATTGACGACACAATTTTCCATGTACTTTTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGCAGGGAGTGGGGAAAAGTATTTTGAGGGGACATTTTCATCATCAGTTCAGCTTTTTTTTTTTGGTTGTTGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TCTTTTTTGGGGGGGTTGGGTTTGTTGGTTTCACTGAAACATTTAACTACCTGTAAAATCTAAACATGGCTGTT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGTGTCACACCAATTCGGGACACAAAATGGCTAACACTGGAAGTATGTAGAGAGTTCCAGAGGGGGACTTGCTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ACGGCCAGACACGGAATGTAAATTTGCACATCCTTCGAAAAGCTGCCAAGTTGAAAATGGACGAGTAATCGCCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCTTTGATTCATTGAAAGCCAGAGCCACGCATTTTATGGAAAATGTAACTAGAAGTAAGGTGCTGAACTGCTGC 1184
Query 1 ----------------------------------ATGGGCCGTTGCTCCAGGGAGAACTGCAAATATCTTCATC 40
|| |||||||||||||||||||||||||||||||||||||
Sbjct 1185 TACAGCACCTTACCTGAGGCACAAACTTTGTTGCAT-GGCCGTTGCTCCAGGGAGAACTGCAAATATCTTCATC 1257
Query 41 CACCCCCACATTTAAAAACGCAGTTGGAGATAAATGGACGCAATAACTTGATTCAGCAGAAGAACATGGCCATG 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CACCCCCACATTTAAAAACGCAGTTGGAGATAAATGGACGCAATAACTTGATTCAGCAGAAGAACATGGCCATG 1331
Query 115 TTGGCCCAGCAAATGCAACTAGCCAATGCCATGATGCCTGGTGCCCCATTACAACCCGTGCCAATGTTTTCAGT 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 TTGGCCCAGCAAATGCAACTAGCCAATGCCATGATGCCTGGTGCCCCATTACAACCCGTGCCAATGTTTTCAGT 1405
Query 189 TGCACCAAGCTTAGCCACCAATGCATCAGCAGCCGCCTTTAATCCCTATCTGGGACCTGTTTCTCCAAGCCTGG 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 TGCACCAAGCTTAGCCACCAATGCATCAGCAGCCGCCTTTAATCCCTATCTGGGACCTGTTTCTCCAAGCCTGG 1479
Query 263 TCCCGGCAGAGATCTTGCCGACTGCACCAATGTTGGTTACAGGGAATCCGGGTGTCCCTGTACCTGCAGCTGCT 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 TCCCGGCAGAGATCTTGCCGACTGCACCAATGTTGGTTACAGGGAATCCGGGTGTCCCTGTACCTGCAGCTGCT 1553
Query 337 GCAGCTGCTGCACAGAAATTAATGCGAACAGACAGACTTGAGGTATGTCGAGAGTACCAACGTGGCAATTGCAA 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 GCAGCTGCTGCACAGAAATTAATGCGAACAGACAGACTTGAGGTATGTCGAGAGTACCAACGTGGCAATTGCAA 1627
Query 411 CCGAGGAGAAAATGATTGTCGGTTTGCTCATCCTGCTGACAGCACAATGATTGACACCAATGACAACACAGTCA 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 CCGAGGAGAAAATGATTGTCGGTTTGCTCATCCTGCTGACAGCACAATGATTGACACCAATGACAACACAGTCA 1701
Query 485 CTGTGTGTATGGATTACATCAAAGGGAGATGCTCTCGGGAAAAGTGCAAATACTTTCATCCCCCTGCACATTTG 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 CTGTGTGTATGGATTACATCAAAGGGAGATGCTCTCGGGAAAAGTGCAAATACTTTCATCCCCCTGCACATTTG 1775
Query 559 CAAGCCAAGATCAAGGCTGCCCAATACCAGGTCAACCAGGCTGCAGCTGCACAGGCTGCAGCCACCGCAGCTGC 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 CAAGCCAAGATCAAGGCTGCCCAATACCAGGTCAACCAGGCTGCAGCTGCACAGGCTGCAGCCACCGCAGCTGC 1849
Query 633 CATGACTCAGTCGGCTGTCAAATCACTGAAGCGACCCCTCGAGGCAACCTTTGACCTGGGAATTCCTCAAGCTG 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 CATGACTCAGTCGGCTGTCAAATCACTGAAGCGACCCCTCGAGGCAACCTTTGACCTGGGAATTCCTCAAGCTG 1923
Query 707 TACTTCCCCCATTACCAAAGAGGCCTGCTCTTGAAAAAACCAACGGTGCCACCGCAGTCTTTAACACTGGTATT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924 TACTTCCCCCATTACCAAAGAGGCCTGCTCTTGAAAAAACCAACGGTGCCACCGCAGTCTTTAACACTGGTATT 1997
Query 781 TTCCAATACCAACAGGCTCTAGCCAACATGCAGTTACAACAGCATACAGCATTTCTCCCACCAGGCTCAATATT 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1998 TTCCAATACCAACAGGCTCTAGCCAACATGCAGTTACAACAGCATACAGCATTTCTCCCACCAGGCTCAATATT 2071
Query 855 GTGCATGACACCCGCTACAAGTGTTGTTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAA 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2072 GTGCATGACACCCGCTACAAGTGTTGTTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAA 2145
Query 929 CATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCA---------------------------- 974
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146 CATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCAGCCCCATCCTTGATGCTTCTACACTGTT 2219
Query 975 ------------------------------------GATACCCATAATATCTGCCGAACATCTGACTAGCCACA 1012
||||||||||||||||||||||||||||||||||||||
Sbjct 2220 GGGTGCAACATCCTGTCCTGCAGCAGCAGGAAAAATGATACCCATAATATCTGCCGAACATCTGACTAGCCACA 2293
Query 1013 AGTATGTTACCCAGATG--------------------------------------------------------- 1029
|||||||||||||||||
Sbjct 2294 AGTATGTTACCCAGATGTAGAATTTTCATCACTAAACAATCATGCTAAAGAGGAAAGGACAGTGTGCTTGGTTA 2367
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2368 GAGTAAAGGACGAGGTCATTAGCCATATTGTATATATCGTCAAGCAACACACACAAAAGTTCCTCAGCCACAAG 2441
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2442 ACATCCACATATTGCATGTTAACCAGAAGAAAAGACAACATTTTCCGGAAATCCACTGCACACTGTTGCCTATA 2515
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2516 CACTTTGTACATTTAATTGATATTTGTGCTGAGGTGATATTCCTGTCTAAAAGAACAACATTGTCTTTCTTTTC 2589
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2590 TAGCACAGAGTTATGCATTCAAAGATGCATACCTAGTTAGTTTCCTATATATTCATGCCATCTTGAAAAGACAG 2663
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2664 ACTATGGTGTAACCATGATTCTATTATGTATTGGTACGTCTGTAGACCAAGATATAATTTTTTAAAAATAAGTT 2737
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2738 TATTTCTTTCAAGGTTTACAAATAACAAAGGTGCACCTTGTATTTAAAATTGCCATTATAGATGAGAGCGTGCA 2811
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2812 TGCACAGTCATTTTTGTTTAAGAGTAATATTTTTAATGTAATAGATTGTAAGACGTGGTGAGGGAGGGATCTGA 2885
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2886 CAGAGATGAATGTGCCAAGCAAAACCACAACTGTGTATATTTTAAAGCACATCATGGCTTTAAGTACCATGTTG 2959
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2960 TTAAGGATTCTCATGAAGTGCCATAGACTGTACATCAAATTAGAGTATTATTTCTTCAGTGTTATTGTTTTCAG 3033
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3034 AGCCACATTTTGTTGCATATTTGCTAGTACTAATCAGTCAAAGGGCACCATTCTTTTTTTTTTTTTTTGAAACC 3107
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3108 AAAGCTGTCTCAGAAATGGCCAATTTAACTTTACAGTAACAATAGACAGCACAACACAAACTCTCTCAATACAG 3181
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3182 ATAAACTCACACATACTGGAGATATATATATAATAGATATATATAAAATTATTTTAATGCATTGTAGTGTAATA 3255
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3256 TTTATGCATACTATACTGTATAACATGTTATTCAAAAGGGATTGCCATTTCTGAGACACAGTAACAAAAAAATG 3329
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3330 AGGAAATTATTTTGCTTCTATTTATAGCCTCTGTCAAAAGTCAAAAGACTATAAATGCTTTGCAAAAATGGTTT 3403
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3404 CACGTTTGCTTAAATGCTTCATCACAGTCACATTCAAAATAGTGACTCTAAACAAAGAAGAAAGCAGCACTGTC 3477
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3478 ATCAGATGCATGATAAACCAAAATATGAAAATGGGAAATGTTTAATTAACCTAGTAATTGGGTGGGTTAAGTAC 3551
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3552 ATGGGTGAATTTTATATGTGATTTTTGTTTTGTTTTGTTTTGTTCAGATTAACTGCTTATAGCCTTAGAAAGCC 3625
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3626 TTTTACAAAATTAAAAAAAAAATAGATGTGCATTCAGTTTTTAAGAATGGAATCATCCAAAGGAATTCCTTTTT 3699
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3700 TTGAGGTTTGGATGTTGCAGCTAGTAAAGGATATTTTTGCTCTGTTCAGCAGTTCTAAAAATTGCTGAAGTAGG 3773
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3774 GGCCAGGTCACTGGTAGTTATAGTATGGAATGGGAGAAGTGAAAGTTCAGTTATAGAACTTTCCATACTTCCAA 3847
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3848 GTTTACTGCAAGTTTTTATGCTTGAGAGAGATGCTTTCTAATATAAGACTGATGTGTTGATTTTACTGATTGTA 3921
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3922 CTGTACATCTATTAAAGCCTTAGATTATTACATTACGGGTTGGAACCCATACCAATGTAATTTCAATCGTGTTA 3995
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3996 AGAAAGTAATGGTGACTTCACATGTTATTGTAGTTAGTTACATTATAGAATATTACTTATTTTTCTTGTTAAAA 4069
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4070 TGTAGTTTTTCATTTCCTACATTTATTAGATTTTCATTTTCTATTAACAATTGAATACCATTTCAGTTTATAGA 4143
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4144 CTTGTTTTATTAGATTTTACCAATGAATTTTTCAAAATACAAAAAAAAGTAGTTTTTCCTTCATAACATACTCA 4217
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4218 GTTTTGAATTACATGTAGTGTCACATGAATATTCGTATTGTTAACTAAATGATTTATATTTTACTGATTTAATA 4291
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4292 TTACAGTGTAAGAATGTCAGTCATTGTTAGTTCTTGTCTAGTTTTCATTAAAAGAACAAAGATCTTTTATATGG 4365
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4366 ATATCTTATAAATATATAATCATTGCTAAGTAAGAAGTTAAGTTGTTGCTATCGCAACAATCCTGGCAGACAAT 4439
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4440 TGAGTAATATTTTGATGATTTATTTTGTTTGTAATTAGTTATTATAAGAAGATCTAGATCCTAGATATTAGAAT 4513
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4514 AAAATTTATTTTCTACTGTATCCATTTCAAATGTTAAAATATTGTTTAATATTTTTGAAATCCCTGAGTATCAG 4587
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4588 GCCTTGTTATAAATAAGCTGCATAATCAATAAATAGAACAAGGGACTTTTTGTTGATAATCCAAATACTCAAAG 4661
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4662 TTTACGTAATGAAAATTATAGCGTGTGTGCAAACTCTTGAGGGTTGATTATGCTGCAATTTAGCATGTTGGAAC 4735
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4736 GTCTAGGGAGAAGGTTGACTTTTTGCACTTCTGTATATAGTCAAAAGAGAGAAACCTGTATAATAGTAAGATCT 4809
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4810 TATTTTGAATAAAAACGTCTATAATTACAAGGAGTTTTGTTAAGGCTAATACAATGACAGACTGAGCAAAATTG 4883
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4884 CTTGCAAAAGTGGCACAGAGTTAGCACTCCATACCCCTTCAAACATGTTGCTTTGCTTTCTTGTGGACAGCTTG 4957
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4958 TAGTTTGCCAGGATTTTTTCAGCTGGAAAGATACGCCATCCTTTCAAACCCTCATGACTGACAAAAACTCCATG 5031
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 5032 GGGCCAAATCTGCCTGAAGATCATTACCAAAAATAGCAGGTACTTCTACCATTAAGGTGAAATCATGGATCAGA 5105
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 5106 TATTCCTTACATTTTTCAAAACTACTGCATGTTTAAAACTTCAACAAAAAAAGAGAGAAAGAACTATACTAAGA 5179
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 5180 ACATATATTATTCAGATCAGTTTCTGCCAATTTCAGTGGTTTATTGTTCACAAAAAAATCTTCAAAACAAGTAT 5253
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 5254 TGACTTTCACAAAATTTAAATCATAAACAGGCAAACCAAACAGCACACTGTAGCTATAGTTGTTATGTGATTGT 5327
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 5328 TTTTTAATTGCTGTAGGATCCTGTTCTTTCAGCAGGTGAAAAATAAAACGCAGTTCAAATTTCATGGTTTTAAT 5401
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 5402 TTTCAACTCAGAAGCACTCAAAAATGCAAAATGTGATAATGGGCACTTGTTTAAAAGAATTAGTGTATCCAGCC 5475
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 5476 TTCACTCCAGCTGGTTAAAAATGTTGCACTTATCAGCAACCCTACCACTTTCATCTGCTGAAAGGACAAATGTG 5549
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 5550 CTTGGTTTTACTATTATGTAATCACAACTTACTTTCTGCTTGTAGTTGCTTAAAATTATGTATTTTGTCTTGGG 5623
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 5624 CTGCAATTTGTTTTATGCTTATTTTATTATTACTGCAGTAGTTGACTTTGCTGTATGGAAAAATAAAGTGAAAT 5697
Query 1030 ------------------------------ 1029
Sbjct 5698 TGCCCTAATAAAACTTCTCTTTCTTAAGTA 5727
