Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15784
- Subject:
- XR_001738701.2
- Aligned Length:
- 4756
- Identities:
- 986
- Gaps:
- 3755
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAGCCTTTTCCTTTGGTCACTCACCACCAGCTTACTCATTTTTTTTTTTTTTTGCACATTACCTTCCACACAAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTTTACTTTGTGGCCACAATGTGCATACTTTTTTTGATTGTTACTTTCATGACATAGCAAATTGTTTCTATAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTCTTTATAAAGGTCATTTAAAATGACATGTGCAGTAAGTCAAAGTCTTCTTGTGCTAGGAAATTTGAAAAAAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAAAGTGTAGAGAAAAATACAAAAATTACTGAATCTGAACATCTATAGAGAAGTGTTGTTAGCAGTTGGTTTAT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTCCTTCCAATCACATACAGATCATATCTGATGGGTAAAGAATATTCCATACTGTCAACAGACCACACTGTCTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTAAAATCGCTTCAGCAGTGAGGATCCTCTGGAATAGATCTTGTTAATCCTGAGGAATTATTCTCCCAGCGGTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGCTATGAGAAGTGGAATCACCAGATGTAGTAATTCCTGACAGAACTGCCGCCTGCTTGTGTGGCTGAGATGCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GACCTAGGTATCAGGCTGGTCGCGCCGGAACCCAGCACCCACGCTGAGTCTTTCTGAGCTCCACTCTGCTCCTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTAGATATTAACCACCTGAGGTAGCTGTCCAGATTCAAGGCGGTAGTGATTTTGTGTGTCTGTGTATTTATCAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GGGGTCCGCGGCGGGAACGCAGGGGCTGTGTCCCACGTCCCCAAACCTCTAGTAGGGTACGGCGCGATGAACAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTCCATAAACCTTAAACCTCCCGGCGCTCAGTCACTGGTTCTTATTTCAGCCCTCTTAGCCCCGTAGGTCGGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCGCTGAAAACCTTTCTGGTACCTGGGGCCTTTCCTAAGAAAAAGGCACATGTCTCGCACATTTCAGTCTGGTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TGCAACTTCAGGCGCGCCAGCACCCGAGGTTCTTCCGACCGGCCGCTCCGCTCCCAAGCCGGGAACTTCCCAGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GAATTGGCTCGGCCTCCGGGCGCGGGGGACAGCATCGGGAGGAGTGGGACTCCGGGCGCCGCGCACGGGCCGAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GACAGCCGGGCTTGGGAGGCCCTGCCCGCCGCCCCGCGTCCTCCCGGCCACTGCCACCCCGCGCATCCGGAGCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCAGCAGACTCGGCGGGGCCCGGAGCCCCACGCCCCCGGCCCGCCCCTGGCCGCCACTTGTTTACTCCCCGGCG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CAGCCTAGTCCGACCCTGGGGCCCGCCCCCGCCCACCGCCTATTGGCCGAGGAGGCGCGAAGAGCCGTAACGAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGGCCCGGGGAGGCGCGGGGCGAGCGGGGTAGGCTGCGCGAGAGGCCGAGAGGGGGCAGCAGGCGATGGCGGCG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCGGTAGCTGCGGCGGGTCGGTTAGGCTGGTTGTTCGCCGCGCTCTGCCTGGGCAACGCCGCGGGGGAGGCCGC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GCCGGGCCCGCGAGTGCTGGGCTTCTGCCTGGAGGAGGATGGAGCGGCGGGCGCGGGTTGGGTACGCGGAGGGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CGGCGCGGGACACGCCGGACGCCACCTTCCTCCTGCGCCTCTTCGGCCCGGGCTTCGCCAACAGCTCTTGGTCC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TGGGTGGCCCCGGAGGGGGCGGGCTGCCGGGAGGAGGCGGCCTCCCCCGCGGGCGAGTGGCGCGCGCTGCTGCG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CTTGCGCCTGCGGGCCGAGGCCGTGCGCCCGCACTCGGCGCTGCTGGCGGTGCGCGTGGAGCCGGGTGGCGGGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CGGCTGAGGAGGCGGCGCCGCCCTGGGCTCTGGGCCTGGGGGCGGCCGGGCTGCTGGCGCTGGCAGCGCTGGCG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CGAGGCCTGCAGCTGAGCGCGCTGGCGCTGGCGCCTGCCGAGGTGCAGGTGCTGCGCGAGAGCGGCTCGGAGGC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GGAGCGTGCGGCGGCGCGGCGTTTGGAGCCCGCGCGGCGCTGGGCCGGCTGCGCCTTGGGCGCGCTGCTGCTGC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGGCCAGCCTGGCGCAGGCGGCGCTGGCGGTGCTGCTGTACCGCGCGGCCGGCCAGCGTGCGGTGCCCGCCGTG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTGGGCAGCGCGGGGCTCGTGTTCCTGGTGGGAGAGGTGGTGCCGGCCGCCGTGAGCGGGCGCTGGACGCTGGC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GCTGGCGCCGCGAGCGCTCGGCCTCAGCCGCCTGGCCGTCCTGCTCACTCTGCCCGTCGCGCTGCCCGTGGGGC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AGCTGCTGGAGCTGGCGGCGCGGCCCGGGCGGCTGCGGGAGCGGGTGCTGGAGCTGGCGCGCGGCGGCGGCGAC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CCCTACAGCGATCTCAGCAAGGGCGTGCTGCGCTGCCGGACCGTGGAGGACGTGCTCACGCCCCTCGAAGACTG 2294
Query 1 ----ATGCTGGACGCCAGCACCGTGCTGGACTTCGGCGTCCTGGCCAGCATCATGCAGAGCGGCCACACGCGCA 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 CTTCATGCTGGACGCCAGCACCGTGCTGGACTTCGGCGTCCTGGCCAGCATCATGCAGAGCGGCCACACGCGCA 2368
Query 71 TCCCGGTGTACGAGGAGGAGCGCTCCAACATCGTGGACATGCTCTACCTCAAGGACTTGGCCTTCGTGGATCCC 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 TCCCGGTGTACGAGGAGGAGCGCTCCAACATCGTGGACATGCTCTACCTCAAGGACTTGGCCTTCGTGGATCCC 2442
Query 145 GAAGACTGCACGCCGCTCAGCACCATCACTCGTTTCTACAACCATCCGCTCCACTTCGTCTTCAACGACACCAA 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 GAAGACTGCACGCCGCTCAGCACCATCACTCGTTTCTACAACCATCCGCTCCACTTCGTCTTCAACGACACCAA 2516
Query 219 GCTGGACGCTGTCCTGGAGGAATTCAAGCGAGGAGA-------------CACCGT------GGTGAA----GAG 269
||||||||||||||||||||||||||||||||| || ||.||| |||||| |||
Sbjct 2517 GCTGGACGCTGTCCTGGAGGAATTCAAGCGAGG-GAAGTCCCACCTGGCCATCGTGCAGAAGGTGAACAACGAG 2589
Query 270 ---GAAG-----CCTGCTTCTCTGA-----------TGGCCCCTCTGAAG--CG-GAAGGAGGAGTTC------ 315
|||| || |||||..|| |||.|.|.|||.|| || ||..||||||.||
Sbjct 2590 GGTGAAGGCGACCC--CTTCTACGAGGTCCTGGGCCTGGTCACCCTGGAGGACGTGATCGAGGAGATCATCAGG 2661
Query 316 -------TCCTTGTTCAAGGTGTCTGATGATGAATATAAAGTAACAATCTCGCCTCAGCTGCTCTTGGCCACCC 382
||||.| |.|.||||||.|| |.|||
Sbjct 2662 TCCGAGATCCTGG----ACGAGTCTGAAGA--------------------------------------CTACC- 2692
Query 383 AGCGCTTCCTGTCCCGAGAAGTGGATGTATTCAGCCCGCTGCGCATCTCTGAGAAGGTCCTGCTGCACCTGTTG 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2693 ------------------AAGTGGATGTATTCAGCCCGCTGCGCATCTCTGAGAAGGTCCTGCTGCACCTGTTG 2748
Query 457 AAGCATCCCAGTGTCAACCAGGAAGTGAGGTTTGACGAGAGCAACCGGCTGGCCACACACCACTACCTGTACCA 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2749 AAGCATCCCAGTGTCAACCAGGAAGTGAGGTTTGACGAGAGCAACCGGCTGGCCACACACCACTACCTGTACCA 2822
Query 531 GCGCAGCCAGCCGGTGGATTACTTCATTCTCATCCTGCAGGGCAGGGTTGAAGTGGAGATCGGGAAAGAGGGTC 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2823 GCGCAGCCAGCCGGTGGATTACTTCATTCTCATCCTGCAGGGCAGGGTTGAAGTGGAGATCGGGAAAGAGGGTC 2896
Query 605 TGAAGTTTGAGAATGGGGCCTTCACGTACTATGGAGTGTCGGCCCTAACTGTGCCATCCTCGGTTCACCAGTCC 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2897 TGAAGTTTGAGAATGGGGCCTTCACGTACTATGGAGTGTCGGCCCTAACTGTGCCATCCTCGGTTCACCAGTCC 2970
Query 679 CCGGTGTCCTCGCTCCAGCCCATCCGCCATGACCTGCAGCCCGACCCAGGTGACGGCACGCATTCATCTGCGTA 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2971 CCGGTGTCCTCGCTCCAGCCCATCCGCCATGACCTGCAGCCCGACCCAGGTGACGGCACGCATTCATCTGCGTA 3044
Query 753 TTGTCCCGACTACACCGTGAGGGCGCTCTCTGATCTGCAGCTCATCAAGGTTACGCGACTGCAGTACCTCAATG 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3045 TTGTCCCGACTACACCGTGAGGGCGCTCTCTGATCTGCAGCTCATCAAGGTTACGCGACTGCAGTACCTCAATG 3118
Query 827 CACTCCTGGCTACCCGAGCCCAGAACCTGCCACAGTCCCCTGAGAACACCGACCTGCAGGTTATTCCAGGCAGC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3119 CACTCCTGGCTACCCGAGCCCAGAACCTGCCACAGTCCCCTGAGAACACCGACCTGCAGGTTATTCCAGGCAGC 3192
Query 901 CAGACCAGGCTCCTTGGTGAGAAGACCACCACAGCGGC------------------------------------ 938
||||||||||||||||||||||||||||||||||||||
Sbjct 3193 CAGACCAGGCTCCTTGGTGAGAAGACCACCACAGCGGCAGCCTTCCCAGTAGACCTTTCCCTCTTTGGCACAGT 3266
Query 939 ----------------------------------------------------------------AGGGTCCAGC 948
||||||||||
Sbjct 3267 TGGAAACTGCAGTTGATAAATGACTGTGGACTAGTGCGCGTTTTTTGTTTTCAGAGCACACGTAAGGGTCCAGC 3340
Query 949 CACAGCA------------------------------------------------------------------- 955
|||||||
Sbjct 3341 CACAGCAGGCCCGGCGTCCCGGTGGAAGGCAGCCCTGGGCGGAACCCAGGCGTTTAACGGCTCACTAGGCAGCC 3414
Query 956 -------------------------------------------------------------------------- 955
Sbjct 3415 CCAGATCTGGGGAACAGATGAGCACGTGGGGAGCTGGAGTGAGCTGAGCAGAAGTTTTGTGCCCGCCTGCCCCC 3488
Query 956 -------------------------------------------------------------------------- 955
Sbjct 3489 ATCCCCTCCAGGCCACGTTTTAGATGGCCCTTGTAGTTGCGGGTCCTGGGTGTCCTCAGAACTAGACATCAATG 3562
Query 956 -------------------------------------------------------------------------- 955
Sbjct 3563 CCTGGATCCTTCAGCCGGCCCTGCCCTCCTTTAGGAGACAGGAGTCACCAGGGCACAGCCCTCCAGGCCCGCCT 3636
Query 956 -----------------------------------------GGCCCAGCCTTCCCCTTCTCCCCCGGGGCAGGG 988
|||||||||||||||||||||||||||||||||
Sbjct 3637 CAGGAAGGAATGAAAGGAATGCCATCATCTCTAGTTCCCAGGGCCCAGCCTTCCCCTTCTCCCCCGGGGCAGGG 3710
Query 989 ACAGTGCGGCATATTCAGATTCAGACCTCTTTGGGCTGAGCCACCTTGTGAGTGCAGTTACTGCCTTTGTGTGG 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3711 ACAGTGCGGCATATTCAGATTCAGACCTCTTTGGGCTGAGCCACCTTGTGAGTGCAGTTACTGCCTTTGTGTGG 3784
Query 1063 CCG----------------------------------------------------------------------- 1065
|||
Sbjct 3785 CCGTGACCTCTATTTGTTTGCTTTTAATTTGCCAACCTATCGCTGCTGGCAGCACTTTTTGAGCAAGCCGAGAG 3858
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 3859 CACCCATTTTGGCTGGGGGTTCAGATCGATGGCCTTGTCCATGTTGTCCTTTCTGGCTTCCCTGATGGTGTCAT 3932
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 3933 GTTTCAGCGCATGCGCCCCAGCCTTTCCCATGTGCCAAACCAGAAGCTCCACTGCCCGTAGGCTGTCCCTGTAG 4006
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4007 CCCTGCTCCCTCCCTGGAGGCTGCTCTTCTGATTCTGAGAGCTGGCCTAGTGGTGCTGAGGGCCCCTTTCTGCT 4080
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4081 TCTCTGCCCACCTGCTGAGTTGCCACTCGCAGTGTTGTCAGTTCCCGTGTTCTGAGAAGAGGTCATGCCTGGGA 4154
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4155 GGAAGGGATCGTCATGCTGCATCGAATCCTCTCTCCGCCGTGTGGCCCCCAGGAGAGTAGCTGCCTGTTGCACC 4228
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4229 TGCTCCACACCTCCCCACAGCCTCCCTGCAGGTGCTGTGTGGCCGTGATGTGCAGAGAGCAGTGAGGGAGGGTT 4302
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4303 CATGAACCAGGTGGATCCTCTTTAAAAAAAAAAAAGTTTTTGTTATATCTCTAGAACATTTCAAGTCTTTTCCT 4376
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4377 TTTTTTCTGTTCCTAGCTATGGGGTTTTAGAGAAGTGGGAACAGGAAGGCATTTGTCTTTTTCTTCTAGTTTAC 4450
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4451 TACATTTTCCTTCCGTAGTTCTTCAGCTGTGTGGAAACGGGCATCACAAGGACATAGGATCATAGATTGGGTAG 4524
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4525 GGAGGGAGGAGGATTTCTGGAACTTTTCTCAAAGGAATTTGGACCCTTATAAATGGGACTGAAGGTCAAAACAA 4598
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4599 CAGTGATATCCTTGCTTAGAAATTGTCCTCAAGGAATAAACTCTGAGAGCAAGCCCGGGTTGGAAACAGATGCT 4672
Query 1066 -------------------- 1065
Sbjct 4673 TTAAAATCCTCTCTCCAGAA 4692
