Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15784
- Subject:
- XR_001738702.2
- Aligned Length:
- 6216
- Identities:
- 992
- Gaps:
- 5224
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTTTTACAAAGCCTTTTCCTTTGGTCACTCACCACCAGCTTACTCATTTTTTTTTTTTTTTGCACATTACCTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCACACAAGTTTTACTTTGTGGCCACAATGTGCATACTTTTTTTGATTGTTACTTTCATGACATAGCAAATTGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTCTATAGAGTCTTTATAAAGGTCATTTAAAATGACATGTGCAGTAAGTCAAAGTCTTCTTGTGCTAGGAAATT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGAAAAAACAAAAGTGTAGAGAAAAATACAAAAATTACTGAATCTGAACATCTATAGAGAAGTGTTGTTAGCAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTGGTTTATTTCCTTCCAATCACATACAGATCATATCTGATGGGTAAAGAATATTCCATACTGTCAACAGACCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CACTGTCTTCTAAAATCGCTTCAGCAGTGAGGATCCTCTGGAATAGATCTTGTTAATCCTGAGGAATTATTCTC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCAGCGGTGAGCTATGAGAAGTGGAATCACCAGATGTAGTAATTCCTGACAGAACTGCCGCCTGCTTGTGTGGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGAGATGCTGACCTAGGTATCAGGCTGGTCGCGCCGGAACCCAGCACCCACGCTGAGTCTTTCTGAGCTCCACT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTGCTCCTGTTAGATATTAACCACCTGAGGTAGCTGTCCAGATTCAAGGCGGTAGTGATTTTGTGTGTCTGTGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATTTATCACGGGGTCCGCGGCGGGAACGCAGGGGCTGTGTCCCACGTCCCCAAACCTCTAGTAGGGTACGGCGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GATGAACATCTTCCATAAACCTTAAACCTCCCGGCGCTCAGTCACTGGTTCTTATTTCAGCCCTCTTAGCCCCG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TAGGTCGGCGCGCTGAAAACCTTTCTGGTACCTGGGGCCTTTCCTAAGAAAAAGGCACATGTCTCGCACATTTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGTCTGGTCTGCAACTTCAGGCGCGCCAGCACCCGAGGTTCTTCCGACCGGCCGCTCCGCTCCCAAGCCGGGAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTTCCCAGAGAATTGGCTCGGCCTCCGGGCGCGGGGGACAGCATCGGGAGGAGTGGGACTCCGGGCGCCGCGCA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CGGGCCGAGGACAGCCGGGCTTGGGAGGCCCTGCCCGCCGCCCCGCGTCCTCCCGGCCACTGCCACCCCGCGCA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TCCGGAGCCGCAGCAGACTCGGCGGGGCCCGGAGCCCCACGCCCCCGGCCCGCCCCTGGCCGCCACTTGTTTAC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCCCCGGCGCAGCCTAGTCCGACCCTGGGGCCCGCCCCCGCCCACCGCCTATTGGCCGAGGAGGCGCGAAGAGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CGTAACGATTGGCCCGGGGAGGCGCGGGGCGAGCGGGGTAGGCTGCGCGAGAGGCCGAGAGGGGGCAGCAGGCG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ATGGCGGCGGCGGTAGCTGCGGCGGGTCGGTTAGGCTGGTTGTTCGCCGCGCTCTGCCTGGGCAACGCCGCGGG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GGAGGCCGCGCCGGGCCCGCGAGTGCTGGGCTTCTGCCTGGAGGAGGATGGAGCGGCGGGCGCGGGTTGGGTAC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCGGAGGGGCGGCGCGGGACACGCCGGACGCCACCTTCCTCCTGCGCCTCTTCGGCCCGGGCTTCGCCAACAGC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TCTTGGTCCTGGGTGGCCCCGGAGGGGGCGGGCTGCCGGGAGGAGGCGGCCTCCCCCGCGGGCGAGTGGCGCGC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GCTGCTGCGCTTGCGCCTGCGGGCCGAGGCCGTGCGCCCGCACTCGGCGCTGCTGGCGGTGCGCGTGGAGCCGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GTGGCGGGGCGGCTGAGGAGGCGGCGCCGCCCTGGGCTCTGGGCCTGGGGGCGGCCGGGCTGCTGGCGCTGGCA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GCGCTGGCGCGAGGCCTGCAGCTGAGCGCGCTGGCGCTGGCGCCTGCCGAGGTGCAGGTGCTGCGCGAGAGCGG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CTCGGAGGCGGAGCGTGCGGCGGCGCGGCGTTTGGAGCCCGCGCGGCGCTGGGCCGGCTGCGCCTTGGGCGCGC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGCTGCTGCTGGCCAGCCTGGCGCAGGCGGCGCTGGCGGTGCTGCTGTACCGCGCGGCCGGCCAGCGTGCGGTG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CCCGCCGTGTTGGGCAGCGCGGGGCTCGTGTTCCTGGTGGGAGAGGTGGTGCCGGCCGCCGTGAGCGGGCGCTG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GACGCTGGCGCTGGCGCCGCGAGCGCTCGGCCTCAGCCGCCTGGCCGTCCTGCTCACTCTGCCCGTCGCGCTGC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CCGTGGGGCAGCTGCTGGAGCTGGCGGCGCGGCCCGGGCGGCTGCGGGAGCGGGTGCTGGAGCTGGCGCGCGGC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GGCGGCGACCCCTACAGCGATCTCAGCAAGGGCGTGCTGCGCTGCCGGACCGTGGAGGACGTGCTCACGCCCCT 2294
Query 1 -------------ATGCTGGACGCCAGCACCGTGCTGGACTTCGGCGTCCTGGCCAGCATCATGCAGAGCGGCC 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 CGAAGACTGCTTCATGCTGGACGCCAGCACCGTGCTGGACTTCGGCGTCCTGGCCAGCATCATGCAGAGCGGCC 2368
Query 62 ACACGCGCATCCCGGTGTACGAGGAGGAGCGCTCCAACATCGTGGACATGCTCTACCTCAAGGACTTGGCCTTC 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 ACACGCGCATCCCGGTGTACGAGGAGGAGCGCTCCAACATCGTGGACATGCTCTACCTCAAGGACTTGGCCTTC 2442
Query 136 GTGGATCCCGAAGACTGCACGCCGCTCAGCACCATCACTCGTTTCTACAACCATCCGCTCCACTTCGTCTTCAA 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 GTGGATCCCGAAGACTGCACGCCGCTCAGCACCATCACTCGTTTCTACAACCATCCGCTCCACTTCGTCTTCAA 2516
Query 210 CGACACCAAGCTGGACGCTGTCCTGGAGGAATTCAAGCGAG--------------------------------- 250
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 CGACACCAAGCTGGACGCTGTCCTGGAGGAATTCAAGCGAGGGAAGTCCCACCTGGCCATCGTGCAGAAGGTGA 2590
Query 251 -------------------------------------------------------------------------- 250
Sbjct 2591 ACAACGAGGGTGAAGGCGACCCCTTCTACGAGGTCCTGGGCCTGGTCACCCTGGAGGACGTGATCGAGGAGATC 2664
Query 251 -------------------------------------GAGACACCGTGGTGAAGAGGAAGCCTGCTTCTCTGAT 287
|||||||||||||||||||||||||||||||||||||
Sbjct 2665 ATCAGGTCCGAGATCCTGGACGAGTCTGAAGACTACCGAGACACCGTGGTGAAGAGGAAGCCTGCTTCTCTGAT 2738
Query 288 GGCCCCTCTGAAGCGGAAGGAGGAGTTCTCCTTGTTCAAGGTGTCTGATGATGAATATAAAGTAACAATCTCGC 361
||||||||||||||||||||||||||||||||||||||
Sbjct 2739 GGCCCCTCTGAAGCGGAAGGAGGAGTTCTCCTTGTTCA------------------------------------ 2776
Query 362 CTCAGCTGCTCTTGGCCACCCAGCGCTTCCTGTCCCGAGAAGTGGATGTATTCAGCCCGCTGCGCATCTCTGAG 435
|||||||||||||||||||||||||||||||||||||
Sbjct 2777 -------------------------------------AGAAGTGGATGTATTCAGCCCGCTGCGCATCTCTGAG 2813
Query 436 AAGGTCCTGCTGCACCTGTTGAAGCATCCCAGTGTCAACCAGGAAGTGAGGTTTGACGAGAGCAACCGGCTGGC 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2814 AAGGTCCTGCTGCACCTGTTGAAGCATCCCAGTGTCAACCAGGAAGTGAGGTTTGACGAGAGCAACCGGCTGGC 2887
Query 510 CACACACCACTACCTGTACCAGCGCAGCCAGCCGGTGGATTACTTCATTCTCATCCTGCAGGGCAGGGTTGAAG 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2888 CACACACCACTACCTGTACCAGCGCAGCCAGCCGGTGGATTACTTCATTCTCATCCTGCAGGGCAGGGTTGAAG 2961
Query 584 TGGAGATCGGGAAAGAGGGTCTGAAGTTTGAGAATGGGGCCTTCACGTACTATGGAGTGTCGGCCCTAACTGTG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2962 TGGAGATCGGGAAAGAGGGTCTGAAGTTTGAGAATGGGGCCTTCACGTACTATGGAGTGTCGGCCCTAACTGTG 3035
Query 658 CCATCCTCGGTTCACCAGTCCCCGGTGTCCTCGCTCCAGCCCATCCGCCATGACCTGCAGCCCGACCCAGGTGA 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3036 CCATCCTCGGTTCACCAGTCCCCGGTGTCCTCGCTCCAGCCCATCCGCCATGACCTGCAGCCCGACCCAGGTGA 3109
Query 732 CGGCACGCATTCATCTGCGTATTGTCCCGACTACACCGTGAGGGCGCTCTCTGATCTGCAGCTCATCAAGGTTA 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3110 CGGCACGCATTCATCTGCGTATTGTCCCGACTACACCGTGAGGGCGCTCTCTGATCTGCAGCTCATCAAGGTTA 3183
Query 806 CGCGACTGCAGTACCTCAATGCACTCCTGGCTACCCGAGCCCAGAACCTGCCACAGTCCCCTGAGAACACCGAC 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3184 CGCGACTGCAGTACCTCAATGCACTCCTGGCTACCCGAGCCCAGAACCTGCCACAGTCCCCTGAGAACACCGAC 3257
Query 880 CTGCAGGTTATTCCAGGCAGCCAGACCAGGCTCCTTGGTGAGAAGACCACCACAGCGGCAGGGTCCAGCCACAG 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3258 CTGCAGGTTATTCCAGGCAGCCAGACCAGGCTCCTTGGTGAGAAGACCACCACAGCGGCAGGGTCCAGCCACAG 3331
Query 954 CA------------------------------------------------------------------------ 955
||
Sbjct 3332 CAGGCCCGGCGTCCCGGTGGAAGGCAGCCCTGGGCGGAACCCAGGCGTTTAACGGCTCACTAGGCAGCCCCAGA 3405
Query 956 -------------------------------------------------------------------------- 955
Sbjct 3406 TCTGGGGAACAGATGAGCACGTGGGGAGCTGGAGTGAGCTGAGCAGAAGTTTTGTGCCCGCCTGCCCCCATCCC 3479
Query 956 -------------------------------------------------------------------------- 955
Sbjct 3480 CTCCAGGCCACGTTTTAGATGGCCCTTGTAGTTGCGGGTCCTGGGTGTCCTCAGAACTAGACATCAATGCCTGG 3553
Query 956 -------------------------------------------------------------------------- 955
Sbjct 3554 ATCCTTCAGCCGGCCCTGCCCTCCTTTAGGAGACAGGAGTCACCAGGGCACAGCCCTCCAGGCCCGCCTCAGGA 3627
Query 956 ------------------------------------GGCCCAGCCTTCCCCTTCTCCCCCGGGGCAGGGACAGT 993
||||||||||||||||||||||||||||||||||||||
Sbjct 3628 AGGAATGAAAGGAATGCCATCATCTCTAGTTCCCAGGGCCCAGCCTTCCCCTTCTCCCCCGGGGCAGGGACAGT 3701
Query 994 GCGGCATATTCAGATTCAGACCTCTTTGGGCTGAGCCACCTTGTGAGTGCAGTTACTGCCTTTGTGTGGCCG-- 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3702 GCGGCATATTCAGATTCAGACCTCTTTGGGCTGAGCCACCTTGTGAGTGCAGTTACTGCCTTTGTGTGGCCGTG 3775
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 3776 ACCTCTATTTGTTTGCTTTTAATTTGCCAACCTATCGCTGCTGGCAGCACTTTTTGAGCAAGCCGAGAGCACCC 3849
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 3850 ATTTTGGCTGGGGGTTCAGATCGATGGCCTTGTCCATGTTGTCCTTTCTGGCTTCCCTGATGGTGTCATGTTTC 3923
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 3924 AGCGCATGCGCCCCAGCCTTTCCCATGTGCCAAACCAGAAGCTCCACTGCCCGTAGGCTGTCCCTGTAGCCCTG 3997
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 3998 CTCCCTCCCTGGAGGCTGCTCTTCTGATTCTGAGAGCTGGCCTAGTGGTGCTGAGGGCCCCTTTCTGCTTCTCT 4071
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4072 GCCCACCTGCTGAGTTGCCACTCGCAGTGTTGTCAGTTCCCGTGTTCTGAGAAGAGGTCATGCCTGGGAGGAAG 4145
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4146 GGATCGTCATGCTGCATCGAATCCTCTCTCCGCCGTGTGGCCCCCAGGAGAGTAGCTGCCTGTTGCACCTGCTC 4219
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4220 CACACCTCCCCACAGCCTCCCTGCAGGTGCTGTGTGGCCGTGATGTGCAGAGAGCAGTGAGGGAGGGTTCATGA 4293
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4294 ACCAGGTGGATCCTCTTTAAAAAAAAAAAAGTTTTTGTTATATCTCTAGAACATTTCAAGTCTTTTCCTTTTTT 4367
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4368 TCTGTTCCTAGCTATGGGGTTTTAGAGAAGTGGGAACAGGAAGGCATTTGTCTTTTTCTTCTAGTTTACTACAT 4441
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4442 TTTCCTTCCGTAGTTCTTCAGCTGTGTGGAAACGGGCATCACAAGGACATAGGATCATAGATTGGGTAGGGAGG 4515
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4516 GAGGAGGATTTCTGGAACTTTTCTCAAAGGAATTTGGACCCTTATAAATGGGACTGAAGGTCAAAACAACAGTG 4589
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4590 ATATCCTTGCTTAGAAATTGTCCTCAAGGAATAAACTCTGAGAGCAAGCCCGGGTTGGAAACAGATGCTTTAAA 4663
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4664 ATCCTCTCTCCAGAACAGTGGTTTTTTGTTTGTTTATTTGAGATGGAGTCTCACTCTGTCACCCAGGCTGGAGT 4737
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4738 GCAGTGGTGAGATCTTGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCCATTCTCCTGTCTCAGCCCCCTGA 4811
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4812 GTAGCTGGGATTACAGGTGCCCACCACCACACCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCA 4885
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4886 TGTTGGCCAGGCTGATCTTGAACTCCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTA 4959
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4960 TAGGTGTGAGCTAAGATCAGGGATTCTTAACCTTGGCTGCACACCAGAATCACCTGGCAAATTAAAAATACGTG 5033
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 5034 GACCTGCCACCAGAGCTTGTGATTTAATCAGAGTCGGCATCAGAGTTTTCAATTTTTTATTTATTTATTATTAT 5107
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 5108 TATTATTATTATTATTATTATTGAGACAAGATCTTGCTCTGTCGCCCAGACTGGAGTGCAGTGGTGTGATCACG 5181
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 5182 GCTTGCTGCAGCCTCGACCTCCCTGGTTCAGGCCATCCTGCCACCTCAGCCTCCTGAGTAGTAGGGACTACAGG 5255
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 5256 TAGGCACCACCACACCCAGCTAATACTTTTAATTTTTTTTTGTAGAGATAGGGTCTCATTATGTTGCCTGGGGT 5329
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 5330 AGTCTCGAACTCCTAGGCTCAAGCGATCCTCCTGCCTCGGCCTCCCAAAGTGTTGAGATTATAGGCGTGAGCCA 5403
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 5404 CCGTGCCCAGATTCACAGAAGTTTCATACACCTTTCACCCAGGTTCCCCTAATGTTAACAGCTTACATATAACC 5477
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 5478 TTGGTACATTTATCAAAACTAAAGGTGCAATCATACTAATAGCTAGAGTTTATTTGGATTTTACCATTTTTCCC 5551
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 5552 AATGTCCCTTTTCTGCTGCAGCAGCCAATCCAGGATGCCATACTGCACTTAGAGCTGTTGCTTTCTTTTTTCCT 5625
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 5626 AACTTTATATTTTGAAATAATTTCAGATGATAGGAAGTTGTAAAGGTAAGGGCCCCACGCACCCTTCATCTAGT 5699
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 5700 TTCCCTCCATGGTTACATCTTATATGGTTGTAATGCAGTATTCCAACAAAGACTCTGACACTGGTGCGATGTGG 5773
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 5774 GTGGACAGTCCAAATCATTTGTCACATGTACATCTGTGTAACTACCACTGCAATCAGGATAAAGAAGTCCCATC 5847
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 5848 CCCACAAGGATCTCCCTCCCCACCTTCCCTAACTCCTGGTAACCACTAATCGTTCATCTCTTCTTATTTTGTCA 5921
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 5922 TTTCAAGAATGTTGTATAAATGGGAGCATAGTGTGTAAGCATTCGGGATTGTCTTTTTTCACTCGGCGTCATTC 5995
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 5996 TCGGGAGATCATCCAGGCATTGCATGTGTCAACAGTTTGCTCCTTTTTATTGCTGAGTGGTATTCCGTGGTGTA 6069
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 6070 TGCATTGGCCCCCTGAAGGACACCTGGGATGTTTCCAGTTTGGGGCTATTCCAAATAAAGCTGCTACGACTATT 6143
