Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15819
Subject:
XR_385387.3
Aligned Length:
3499
Identities:
856
Gaps:
2608

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CCCCCAGCCTCTGCTGGCGCTAAACCCCGGAGAGCGGAGCGTGCACGCTGAGCCTCCTCGGCGGGCCCGGCCGC  74

Query    1  ------------------------------------------------------------ATGTCCAACCGAGT  14
                                                                        ||||||||||||||
Sbjct   75  GGCGCTGGGCATGCTCAGTGGGCCGGCCCCGGTAGAGCGGCGAGCGGCACAGGCACCAAGATGTCCAACCGAGT  148

Query   15  GGTCTGCCGAGAAGCCAGTCACGCCGGGAGCTGGTACACAGCCTCAGGACCGCAGCTGAATGCACAGCTAGAAG  88
            |||||||||.||||||||.||||||||||||||||||||.|||||||||||.||||||||.||.|||||.||||
Sbjct  149  GGTCTGCCGGGAAGCCAGCCACGCCGGGAGCTGGTACACCGCCTCAGGACCTCAGCTGAACGCTCAGCTGGAAG  222

Query   89  GTTGGCTTTCACAAGTACAGTCTACAAAAAGACCTGCTAGAGCCATTATTGCCCCCCATGCAGGATATACGTAC  162
            |||||||||||||||||||||||||.||||||||||||||||||||||||||.||||||||.|||||.||.|||
Sbjct  223  GTTGGCTTTCACAAGTACAGTCTACGAAAAGACCTGCTAGAGCCATTATTGCACCCCATGCGGGATACACATAC  296

Query  163  TGTGGGTCTTGTGCTGCCCATGCTTATAAACAAGTGGATCCGTCTATTACCCGGAGAATTTTCATCCTTGGGCC  236
            ||||||||.|||||||||||||||||.||||||||||||||.|||.||||||||||||||||||||||||||||
Sbjct  297  TGTGGGTCCTGTGCTGCCCATGCTTACAAACAAGTGGATCCATCTGTTACCCGGAGAATTTTCATCCTTGGGCC  370

Query  237  TTCTCATCATGTGCCCCTCTCTCGATGTGCACTTTCCAGTGTGGATATATATAGGACACCTCTGTATGACCTTC  310
            |||.||||||||||||||.||||||||||||||.|||||||||||||||||||||||.|||||||||||.||||
Sbjct  371  TTCCCATCATGTGCCCCTGTCTCGATGTGCACTCTCCAGTGTGGATATATATAGGACTCCTCTGTATGATCTTC  444

Query  311  GTATTGACCAAAAGATTTACGGAGAACTGTGGAAGACAGGAATGTTTGAACGCATGTCTCTGCAGACAGATGAA  384
            |||||||||||||||||||||||||.||.|||||||||||||||||||||||.|||||||||||||||||||||
Sbjct  445  GTATTGACCAAAAGATTTACGGAGAGCTATGGAAGACAGGAATGTTTGAACGAATGTCTCTGCAGACAGATGAA  518

Query  385  GATGAACACAGTATTGAAATGCATTTGCCTTATACAGCTAAAGCCATGGAAAGCCATAAGGATGAGTTTACCAT  458
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct  519  GATGAACACAGTATTGAAATGCATTTGCCTTATACAGCTAAAGCCATGGAAAGCCATAAAGATGAGTTTACCAT  592

Query  459  TATTCCTGTACTGGTTGGAGCTCTGAGTGAGTCAAAAGAACAGGAATTCGGAAAACTCTTCAGTAAATATCTAG  532
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TATTCCTGTACTGGTTGGAGCTCTGAGTGAGTCAAAAGAACAGGAATTCGGAAAACTCTTCAGTAAATATCTAG  666

Query  533  CGGATCCTAGTAATCTCTTTGTGGTTTCTTCTGATTTCTGCCATTGG---------------------------  579
            |||||||||||||||||||||||||||||||||||||||||||.|||                           
Sbjct  667  CGGATCCTAGTAATCTCTTTGTGGTTTCTTCTGATTTCTGCCACTGGGTGGTTTACAGATCAGTTCCAATCAAT  740

Query  580  --------------------------------------------------------------------------  579
                                                                                      
Sbjct  741  TTACTAAAAAGCGTGCTCTGGAATGGATTCACAAATGAGCTACCCTCCTTCCCTCAAAGAGTAAGGTTTCTGCT  814

Query  580  --------------------------------------------------------------------------  579
                                                                                      
Sbjct  815  TTACAGGATTTTTTTTTCCTTGGGTTATTTTTCCTCTCATCTTTTGAATTTGAAAAGAACTGAGGGAAGGCACC  888

Query  580  --------------------------------------------------------------------------  579
                                                                                      
Sbjct  889  TGAAGAAACCACTGATACACTCACTAGGGAGTTGCAGAGCTTGTCCCGCCCCTAGGGCGGAGTCCATGCTCCTA  962

Query  580  --------------------------------------------------------------------------  579
                                                                                      
Sbjct  963  AAGCTAAAGCTCACACTTGAAGTGGAAACAGGGGCTCAGAGAATCCATTTTCCCAGTGTGCCTTCTGAAAGGAT  1036

Query  580  --------GGTCAAAGGTTCCGTTACAGTTACTATGATGAATCCCAGGGGGAGATTTATAGATCCATTGAACAT  645
                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AAGTCTCAGGTCAAAGGTTCCGTTACAGTTACTATGATGAATCCCAGGGGGAGATTTATAGATCCATTGAACAT  1110

Query  646  CTAGATAAAATGGGTATGAGTATTATAGAACAATTAGACCCTGTATCTTTTAGCAATTACTTGAAGAAATACCA  719
            ||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||.|||||||||||.||
Sbjct 1111  CTAGATAAAATGGGTATGAGTATTATAGAACAATTAGATCCTGTATCTTTTAGCAATTATTTGAAGAAATATCA  1184

Query  720  TAATACTATATGTGGAAGACATCCCATTGGGGTGTTATTAAATGCTATCACAGAGCTCCAGAAGAATGGAATGA  793
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 1185  TAATACTATATGTGGAAGACATCCCATTGGGGTGTTATTAAATGCTATCACAGAGCTTCAGAAGAATGGAATGA  1258

Query  794  ATATGAGTTTTTCGTTTTTGAATTATGCCCAGTCGAGCCAGTGTAGAAACTGGCAAGACAGTTCAGTGAGTTAT  867
            |||||||.|||||.||||||||||||||||||||||||||||||||||.||||||||||||||||||.|||||.
Sbjct 1259  ATATGAGCTTTTCCTTTTTGAATTATGCCCAGTCGAGCCAGTGTAGAAGCTGGCAAGACAGTTCAGTCAGTTAC  1332

Query  868  GCAGCTGGAGCACTCACGGTCCAC--------------------------------------------------  891
            ||||||||||||||||||||||||                                                  
Sbjct 1333  GCAGCTGGAGCACTCACGGTCCACTGAAGCTCCGATCCTCAGGGACACCACCTGCACAGACTCGTACTCTGTCC  1406

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1407  AGGGTCCAGCCTAGCCTTTACCAAGATGTTGGTTCTGGTGTGGGGGGATTCTGAAACCTCAGACTAATAGAACT  1480

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1481  CTCTTCTTCTTTTCTAGTAGGTGTAGTCCTCCTTAATTTCAACTCATTTTAAAAATGCTTTCTAGTTTGAGGCA  1554

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1555  GTGGAAGGAAGGCTGGAATCAAAATATTTGCCCAAATTGGCACACAGTGACTTGTAAAGCATTTAGCATATCTG  1628

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1629  AAATTTGCACTCTTTGCAGACTCATGCACATATATTCCGCTTTCAGAATAGTTTTGCAAATTGTACACAGACAA  1702

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1703  AGGGTGGAAGCTTTTTAATAAAAGAAACTGCATTTATAAATGATCTGTATTAGAATATAAGAAATCTCCAGTTA  1776

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1777  TAGACAATTACTACCCATGTTGTACAACAGATACCTTCTATTTTAGTTGCTAATAAAGGGCTACACAACTCAAA  1850

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1851  ATAGTCTGATTTAAACTTATTGCTTTGTGGTATAAATGGAAATTGTTTTTTATTAATTCTATCTCAGAATTTTT  1924

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1925  GTTAAAATGGCAAGCCTCAGCTTCGATGTAATAATGTTAAAATTATTTTATTTTTACATTTATGTGATTTTTTT  1998

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1999  TTAAATCACAGAAATTATAGTCATATTTTAAAGTTAACTTTCAAAACTATAGTCATTGCATTTTTGTGTGTGAC  2072

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2073  ATACCCTCATGTCATTATTATATTGTACTACAATATAAATTCAAGGATGCTTTAAAAACAAGTAGATTTATTCC  2146

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2147  TTTCCTCCAATGACTGTGTTCGGTAGTCTGCACATGAAGATATTGAAGAGTGTCATTAGTTGTGTTTCAAGTTG  2220

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2221  TTGCAGACCATCACCACTATGGTTTTTTGTTTGTTTGTTTGTTTTTATTGCTTTAAGCAATTTAACTCTTTCAC  2294

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2295  TTGAATTTTTAGCAAGAAATCATTAACAATATTAGTAACAAGGCCTATTGGACTTCTGATAGTCCTGCAAAAAA  2368

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2369  TTTGTTTGGGGAGGGCATGATTTTTGGTGCGGCTCTTCCAACTAAAATAATGGTATGGTGTTGTATTTCTTTAT  2442

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2443  CATAGATTTATTCTAGTCATTTTGGGGAGGAAAGTGTTAACTCATTAAGCCATCATGCATGTTGTTCATCATCC  2516

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2517  CTGTTTTACCAACACTGGATGTTTCTATAACATTGGAGAGTGTTAGTCTTCAGTGTTATACCCAAGTAGCACAA  2590

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2591  GCTTTAGATGCCTTGCACCAATTTTCTTTTGGAGATTTACGTTTCTTACTTATTAAATACCAATTTTCTATTCT  2664

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2665  CAAGAATGGGAGAAAATAATACTACCTTTTAGATTTAAAATTTACCTACTTATACATGTAGGAAATATACTCTT  2738

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2739  ATACATCAGTGTTTTATTTTCCATTATTTAGATACGCTTTTGAGTACTATAAATATTTATTTCTTGTTTAATAC  2812

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2813  AGATTATAAAAATTTCTGAATTGACAATAGTGAATTTTTAAAATAATGTTTTCTGAGTATAGAATTTGAAAATA  2886

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2887  CTGAAAAGTCAGAAGAAAAAATCTATTACCTACAATCTCACTACTCCAGAGATAACACTGTTAAATGTTTTTCT  2960

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2961  GTATTTACTTGTAGTCCTTGTGTTTTTTATGAGTGTGTATGTGTGTGTGTGTGTGTGTGCAACAACAGAATTGA  3034

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 3035  GATTATAGTGCCCATACATTTGCGTTATGCCCTGTTATCCTAAGTATCTACTACCTGTGTCTCTGAAAGCACTA  3108

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 3109  TTTTAAAAATGCCTGCCTAATATGCTATACTGTATGAAAATAGTTCTCTCTTTGGATGTTAGGCTGTTTCTAAT  3182

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 3183  TTTCCTCAATTTTATAATGGTACGGACATTCTGTGTAAATTAGACCCAGTCTCTAGGATATAATCATGAAAATG  3256

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 3257  AAATAAATGGTTTACATGATAATTTTGTAGGCCCTTTAAAAGTATGCCAAATTATATTTTCAATAGATTGTATC  3330

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 3331  AAATTAACAGCACCCCCACATCAGCATCGTTTCTTTTAATTTTTGAAAAATTGTTAAGCAAGTAATTGTTTCTT  3404

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 3405  TTTTAAAGACTTTCTTTCGAATTAGTCATTTATTGTCTTTTATAAATTTAGAATGTTTTTTTTGAAAAACAACA  3478

Query  892  ---------------------  891
                                 
Sbjct 3479  TTAAAGAGACGTCTAGTTCTA  3499

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