Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15888
Subject:
NM_001366074.2
Aligned Length:
4953
Identities:
762
Gaps:
4191

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGAGGAGACTGGCTTTTCGAGGCGCTGGTTGTGCTCTGAAGTTGGATTCCATGGGTTCCAAGAGAAGAAGAGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TACCTCCCCTTCCAGCAGTGTCAGCGGGGACTTTGATGATGGGCACCATTCTGTGTCAACACCAGGCCCAAGCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGAAAAGGAGGAGACTTTCCAATCTTCCAACTGTAGATCCTATTGCCGTGTGCCATGAACTCTATAATACCATC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGAGACTATAAGGATGAACAGGGCAGACTTCTCTGTGAGCTCTTCATTAGGGCACCAAAGCGAAGAAATCAACC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGACTATTATGAAGTGGTTTCTCAGCCCATTGACTTGATGAAAATCCAACAGAAACTAAAAATGGAAGAGTATG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATGATGTTAATTTGCTGACTGCTGACTTCCAGCTTCTTTTTAACAATGCAAAGTCCTATTATAAGCCAGATTCT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCTGAATATAAAGCCGCTTGCAAACTCTGGGATTTGTACCTTCGAACAAGAAATGAGTTTGTTCAGAAAGGAGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AGCAGATGACGAAGATGATGATGAAGATGGGCAAGACAATCAGGGCACAGTGACTGAAGGATCTTCTCCAGCTT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ACTTGAAGGAGATCCTGGAGCAGCTTCTTGAAGCCATAGTTGTAGCTACAAATCCATCAGGACGTCTCATTAGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GAACTTTTTCAGAAACTGCCTTCTAAAGTGCAATATCCAGATTATTATGCAATAATTAAGGAGCCTATAGATCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CAAGACCATTGCCCAGAGGATACAGAATGGAAGCTACAAAAGTATTCATGCAATGGCCAAAGATATAGATCTCC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TCGCAAAAAATGCCAAAACTTATAATGAGCCTGGCTCTCAAGTATTCAAGGATGCAAATTCAATTAAAAAAATA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TTTTATATGAAAAAGGCTGAAATTGAACATCATGAAATGGCTAAGTCAAGTCTTCGAATGAGGACTCCATCCAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CTTGGCTGCAGCCAGACTGACAGGTCCTTCACACAGTAAAGGCAGCCTTGGTGAAGAGAGAAATCCCACTAGCA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AGTATTACCGTAATAAAAGAGCAGTACAAGGAGGTCGTTTATCAGCAATTACAATGGCACTTCAATATGGCTCA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GAAAGTGAAGAAGATGCTGCTTTAGCTGCTGCACGCTATGAAGAGGGAGAGTCAGAAGCAGAAAGCATCACTTC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CTTTATGGATGTTTCAAATCCTTTTTATCAGCTTTATGACACAGTTAGGAGTTGTCGGAATAACCAAGGGCAGC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TAATAGCTGAACCTTTTTACCATTTGCCTTCAAAGAAAAAATACCCTGATTATTACCAGCAAATTAAAATGCCC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  ATATCACTACAACAGATCCGAACAAAACTGAAGAATCAAGAATATGAAACTTTAGATCATTTGGAGTGTGATCT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GAATTTAATGTTTGAAAATGCCAAACGCTATAATGTGCCCAATTCAGCCATCTACAAGCGAGTTCTAAAATTGC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AGCAAGTTATGCAGGCAAAGAAGAAAGAGCTTGCCAGGAGAGACGATATCGAGGACGGAGACAGCATGATCTCT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TCAGCCACCTCTGATACTGGTAGTGCCAAAAGAAAAAGTAAAAAGAACATAAGAAAGCAGCGAATGAAAATCTT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATTCAATGTTGTTCTTGAAGCTCGAGAGCCAGGTTCAGGCAGAAGACTTTGTGACCTATTTATGGTTAAACCAT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CCAAAAAGGACTATCCTGATTATTATAAAATCATCTTGGAGCCAATGGACTTGAAAATAATTGAGCATAACATC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CGCAATGACAAATATGCTGGTGAAGAGGGAATGATAGAAGACATGAAGCTGATGTTCCGGAATGCCAGGCACTA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TAATGAGGAGGGCTCCCAGGTTTATAATGATGCACATATCCTGGAGAAGTTACTCAAGGAGAAAAGGAAAGAGC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TGGGCCCACTGCCTGATGATGATGACATGGCTTCTCCCAAACTCAAGCTGAGTAGGAAGAGTGGCATTTCTCCT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  AAAAAATCAAAATACATGACTCCAATGCAGCAGAAACTAAATGAGGTCTATGAAGCTGTAAAGAACTATACTGA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TAAGAGGGGTCGCCGCCTCAGTGCCATATTTCTGAGGCTTCCCTCTAGATCTGAGTTGCCTGACTACTATCTGA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CTATTAAAAAGCCCATGGACATGGAAAAAATTCGAAGTCACATGATGGCCAACAAGTACCAAGATATTGACTCT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ATGGTTGAGGACTTTGTCATGATGTTTAATAATGCCTGTACATACAATGAGCCGGAGTCTTTGATCTACAAAGA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TGCTCTTGTTCTACACAAAGTCCTGCTTGAAACACGCAGAGACCTGGAGGGAGATGAGGACTCTCATGTCCCAA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  ATGTGACTTTGCTGATTCAAGAGCTTATCCACAATCTTTTTGTGTCAGTCATGAGTCATCAGGATGATGAGGGA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AGATGCTACAGCGATTCTTTAGCAGAAATTCCTGCTGTGGATCCCAACTTTCCTAACAAACCACCCCTTACATT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TGACATAATTAGGAAGAATGTTGAAAATAATCGCTACCGTCGGCTTGATTTATTTCAAGAGCATATGTTTGAAG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TATTGGAACGAGCAAGAAGGATGAATCGGACAGATTCAGAAATATATGAAGATGCAGTAGAACTTCAGCAGTTT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TTTATTAAAATTCGTGATGAACTCTGCAAAAATGGAGAGATTCTTCTTTCACCGGCACTCAGCTATACCACAAA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  ACATTTGCATAATGATGTGGAGAAAGAGAGAAAGGAAAAATTGCCAAAAGAAATAGAGGAAGATAAACTAAAAC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  GAGAAGAAGAAAAAAGAGAAGCTGAAAAGAGTGAAGATTCCTCTGGTGCTGCAGGCCTCTCAGGCTTACATCGC  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  ACATACAGCCAGGACTGTAGCTTTAAAAACAGCATGTACCATGTTGGAGATTACGTCTATGTGGAACCTGCAGA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  GGCCAACCTACAACCACATATCGTCTGTATTGAAAGACTGTGGGAGGATTCAGCTGGTGAAAAATGGTTGTATG  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  GCTGTTGGTTTTACCGACCAAATGAAACATTCCACCTGGCTACACGAAAATTTCTAGAAAAAGAAGTTTTTAAG  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  AGTGACTATTACAACAAAGTTCCAGTTAGTAAAATTCTAGGCAAGTGTGTGGTCATGTTTGTCAAGGAATACTT  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  TAAGTTATGCCCAGAAAACTTCCGAGATGAGGATGTTTTTGTCTGTGAATCACGGTATTCTGCCAAAACCAAAT  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  CTTTTAAGAAAATTAAACTGTGGACCATGCCCATCAGCTCAGTCAGGTTTGTCCCTCGGGATGTGCCTCTGCCT  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  GTGGTTCGCGTGGCCTCTGTATTTGCAAATGCAGATAAAGGTGATGATGAGAAGAATACAGACAACTCAGAGGA  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  CAGTCGAGCTGAAGACAATTTTAACTTGGAAAAGGAAAAAGAAGATGTCCCTGTGGAAATGTCCAATGGTGAAC  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  CAGGTTGCCACTACTTTGAGCAGCTCCATTACAATGACATGTGGCTGAAGGTTGGCGACTGTGTCTTCATCAAG  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  TCCCATGGCCTGGTGCGTCCTCGTGTGGGCAGAATTGAAAAAGTATGGGTTCGAGATGGAGCTGCATATTTTTA  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  TGGCCCCATCTTCATTCACCCAGAAGAAACAGAGCATGAGCCCACAAAAATGTTCTACAAAAAAGAAGTATTTC  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  TGAGTAATCTGGAAGAAACCTGCCCCATGACATGTATTCTCGGAAAGTGTGCTGTGTTGTCATTCAAGGACTTC  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  CTCTCCTGCAGGCCAACTGAAATACCAGAAAATGACATTCTGCTTTGTGAGAGCCGCTACAATGAGAGCGACAA  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  GCAGATGAAGAAATTCAAAGGATTGAAGAGGTTTTCACTCTCTGCTAAAGTGGTAGATGATGAAATTTACTACT  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  TCAGAAAACCAATTGTTCCTCAGAAGGAGCCATCACCTTTGCTGGAAAAGAAGATCCAGTTGCTAGAAGCTAAA  3996

Query    1  ---------------------------------------ATGGGAGAAGAAGATAGTGAGGTCATTGAACCTCC  35
                                                   |||||||||||||||||||||||||||||||||||
Sbjct 3997  TTTGCCGAGTTAGAAGGTGGAGATGATGATATTGAAGAGATGGGAGAAGAAGATAGTGAGGTCATTGAACCTCC  4070

Query   36  TTCTCTACCTCAGCTTCAGACCCCCCTGGCCAGTGAGCTGGACCTCATGCCCTACACACCCCCACAGTCTACCC  109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4071  TTCTCTACCTCAGCTTCAGACCCCCCTGGCCAGTGAGCTGGACCTCATGCCCTACACACCCCCACAGTCTACCC  4144

Query  110  CAAAGTCTGCCAAAGGCAGTGCAAAGAAGGAAGGCTCCAAACGGAAAATCAACATGAGTGGCTACATCCTGTTC  183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4145  CAAAGTCTGCCAAAGGCAGTGCAAAGAAGGAAGGCTCCAAACGGAAAATCAACATGAGTGGCTACATCCTGTTC  4218

Query  184  AGCAGTGAGATGAGGGCTGTGATTAAGGCCCAACACCCAGACTACTCTTTCGGGGAGCTCAGCCGCCTGGTGGG  257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4219  AGCAGTGAGATGAGGGCTGTGATTAAGGCCCAACACCCAGACTACTCTTTCGGGGAGCTCAGCCGCCTGGTGGG  4292

Query  258  GACAGAATGGAGAAATCTTGAGACAGCCAAGAAAGCAGAATATGAAGGCATGATGGGTGGCTATCCGCCAGGCC  331
            ||||||||||||||||||||||||||||||||||||||||||||||                            
Sbjct 4293  GACAGAATGGAGAAATCTTGAGACAGCCAAGAAAGCAGAATATGAA----------------------------  4338

Query  332  TTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGCATGCAGCCACTTCACCCTGGGGGGCCT  405
                                                                                      
Sbjct 4339  --------------------------------------------------------------------------  4338

Query  406  CCACCCCACCATCTTCCGCCAGGTGTGCCTGGCCTCCCGGGCATCCCACCACCGGGTGTGATGAACCAAGGAGT  479
                                                                  ||||||||||||||||||||
Sbjct 4339  ------------------------------------------------------GGTGTGATGAACCAAGGAGT  4358

Query  480  GGCCCCTATGGTAGGGACTCCAGCACCAGGTGGAAGTCCATATGGACAACAGGTGGGAGTTTTGGGGCCTCCAG  553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4359  GGCCCCTATGGTAGGGACTCCAGCACCAGGTGGAAGTCCATATGGACAACAGGTGGGAGTTTTGGGGCCTCCAG  4432

Query  554  GGCAGCAGGCACCACCTCCATATCCCGGCCCACATCCAGCTGGACCCCCTGTCATACAGCAGCCAACAACACCC  627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4433  GGCAGCAGGCACCACCTCCATATCCCGGCCCACATCCAGCTGGACCCCCTGTCATACAGCAGCCAACAACACCC  4506

Query  628  ATGTTTGTAGCTCCCCCACCAAAGACCCAGCGGCTTCTTCACTCAGAGGCCTACCTGAAATACATTGAAGGACT  701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4507  ATGTTTGTAGCTCCCCCACCAAAGACCCAGCGGCTTCTTCACTCAGAGGCCTACCTGAAATACATTGAAGGACT  4580

Query  702  CAGTGCGGAGTCCAACAGCATTAGCAAGTGGGATCAGACACTGGCAGCTCGAAGACGCGACGTCCATTTGTCGA  775
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4581  CAGTGCGGAGTCCAACAGCATTAGCAAGTGGGATCAGACACTGGCAGCTCGAAGACGCGACGTCCATTTGTCGA  4654

Query  776  AAGAACAGGAGAGCCGCCTACCCTCTCACTGGCTGAAAAGCAAAGGGGCCCACACCACCATGGCAGATGCCCTC  849
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4655  AAGAACAGGAGAGCCGCCTACCCTCTCACTGGCTGAAAAGCAAAGGGGCCCACACCACCATGGCAGATGCCCTC  4728

Query  850  TGGCGCCTTCGAGATTTGATGCTCCGGGACACCCTCAACATTCGCCAAGCATACAACCTAGAAAATGTT  918
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4729  TGGCGCCTTCGAGATTTGATGCTCCGGGACACCCTCAACATTCGCCAAGCATACAACCTAGAAAATGTT  4797

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