Nucleotide Global Alignment

Description

Query:
ccsbBroad304_16137
Subject:
NM_001244960.1
Aligned Length:
1682
Identities:
586
Gaps:
1066

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCAGCTTTCAAAGAGGGAAACCAAAGGGCAGTTTCTCATTGACCACATCTGCAACTACTACAGCCTGCTGGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAAGGACTACTTTGGCATTCGCTATGTGGACCCAGAGAAGCAAAGGCACTGGCTTGAACCTAACAAGTCCATCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCAAGCAAATGAAAACTCATCCACCATACACCATGTGCTTTAGAGTGAAATTCTACCCACATGAACCCTTGAAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ATTAAAGAAGAGCTCACAAGATACCTTTTATACCTTCAGATTAAAAGGGACATTTTTCATGGCCGCCTGCTGTG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTCCTTTTCTGATGCTGCCTACCTGGGTGCCTGTATTGTTCAAGCTGAGCTTGGTGATTACGATCCTGATGAGC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATCCTGAGAATTACATCAGTGAGTTTGAGATTTTCCCCAAGCAGTCACAGAAGCTGGAAAGAAAAATAGTGGAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATTCATAAAAATGAACTCAGGGGGCAGAGCCCACCAGTTGCTGAATTTAACTTGCTCCTGAAAGCTCACACTTT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGAAACCTACGGGGTGGATCCTCACCCATGCAAGGATTCAACAGGCACAACAACATTTTTAGGATTCACAGCTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CAGGCTTTGTGGTCTTTCAGGGAAATAAGAGAATCCATTTGATAAAATGGCCAGATGTCTGCAAATTGAAGTTT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GAAGGGAAGACATTTTATGTGATTGGCACCCAGAAGGAGAAAAAAGCCATGTTGGCATTCCATACTTCAACACC  740

Query    1  ---------------------------------------------------------------ATGCAGGCCGA  11
                                                                           ||.|||.|.||
Sbjct  741  AGCTGCCTGCAAACATCTTTGGAAGTGTGGAGTGGAAAACCAGGCCTTTTATAAGTATGCAAAATCCAGTCAGA  814

Query   12  -GGAGAC-----CAAG-------------------GG-----GATT-----------GGAATAACCAGTATGGC  44
             ..||||     ||||                   ||     ||||           ||||     ||| ||.|
Sbjct  815  TCAAGACTGTATCAAGCAGCAAGATATTTTTTAAAGGAAGTAGATTTCGATATAGTGGGAA-----AGT-TGCC  882

Query   45  AAA-ATGCTTGGT------------CAAGATCCAGACTCGACGAAGCCTCC--AATTGCACATGGTGAA-----  98
            ||| |.|  ||||            |||||||||     ||.|.|||||||  |..||||||..|..||     
Sbjct  883  AAAGAGG--TGGTGGAGGCCAGTTCCAAGATCCA-----GAGGGAGCCTCCTGAGGTGCACAGAGCCAACATTA  949

Query   99  ----------------CCACTGC-------AACAG--------TAATGTGTTTGTTCGTCTGCTGAGACTCGGC  141
                            |||||.|       |||||        |||..||   |..|..||||  ||.|.|.||
Sbjct  950  CTCAGAGCCGCAGTTCCCACTCCTTGAACAAACAGCTCATCATTAACATG---GAACCCCTGC--AGCCCCTGC  1018

Query  142  -----TCCAAGGTCACAGCTCGTAA-------CACT-------------GGTGTTCCATTGCCTAAAGAGGAGA  190
                 |||     |.||||..|.||       .|||             |||||||||||||||||||||||||
Sbjct 1019  TTCCTTCC-----CCCAGCGAGCAAGAAGAAGAACTTCCTCTGGGTGAGGGTGTTCCATTGCCTAAAGAGGAGA  1087

Query  191  ACATTTCTGCTCCCTTGATCTCCAGCTCCCCAGTGAAGGCAGCCCGGGAGTATGAAGATCCCCCTAGTGAAGAG  264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088  ACATTTCTGCTCCCTTGATCTCCAGCTCCCCAGTGAAGGCAGCCCGGGAGTATGAAGATCCCCCTAGTGAAGAG  1161

Query  265  GAAGATAAAATAAAAGAAGAACCTTTAACCATCTCTGAACTAGTGTACAACCCAAGTGCCAGCCTGCTCCCCAC  338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162  GAAGATAAAATAAAAGAAGAACCTTTAACCATCTCTGAACTAGTGTACAACCCAAGTGCCAGCCTGCTCCCCAC  1235

Query  339  CCCTGTGGATGACGATGAGATTGACATGCTCTTTGACTGTCCTTCTAGGCTTGAGTTGGAAAGAGAAGACACAG  412
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236  CCCTGTGGATGACGATGAGATTGACATGCTCTTTGACTGTCCTTCTAGGCTTGAGTTGGAAAGAGAAGACACAG  1309

Query  413  ATTCATTTGAGGATCTGGAAGCAGATGAAAACGCCTTTTTGATTGCTGAAGAAGAGGAGCTGAAGGAGGCTCGC  486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310  ATTCATTTGAGGATCTGGAAGCAGATGAAAACGCCTTTTTGATTGCTGAAGAAGAGGAGCTGAAGGAGGCTCGC  1383

Query  487  CGTGCTTTGTCGTGGAGCTATGACATTCTGACTGGCCATATTCGGGTGAACCCACTGGTCAAGAGTTTTTCCAG  560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384  CGTGCTTTGTCGTGGAGCTATGACATTCTGACTGGCCATATTCGGGTGAACCCACTGGTCAAGAGTTTTTCCAG  1457

Query  561  GCTCCTTGTGGTGGGCCTGGGACTGCTGCTCTTTGTATTTCCCCTGCTCCTCCTCCTTTTGGAGTCAG------  628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct 1458  GCTCCTTGTGGTGGGCCTGGGACTGCTGCTCTTTGTATTTCCCCTGCTCCTCCTCCTTTTGGAGTCAGGTATTG  1531

Query  629  ---TCTCC-----ATG----------CAG---------------------------------------------  639
               |||||     |||          |||                                             
Sbjct 1532  ATCTCTCCTTCTTATGCGAAATCCGCCAGACACCAGAGTTTGAGCAGTTTCACTATGAATACTACTGTCCCCTC  1605

Query  640  ------------------------------------------------------  639
                                                                  
Sbjct 1606  AAGGAGTGGGTGGCTGGGAAAGTCCACCTCATCCTCTACATGCTGGGTTGCTCA  1659

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.