Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00567
- Subject:
- NR_027622.1
- Aligned Length:
- 6059
- Identities:
- 777
- Gaps:
- 5221
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AATCCGCCGGCTGGCGCCCCTGGAATGGGGAGGTCGGCCGCCTGGCGGGGCCAGCGGTCCTTAGCGGTGCCTTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCTCCCCTCTTCCCTCCGCTCCTGCTGTGCGGGAACTGGAGAATCGTTAGGACGTGGAGGAAGCAGAGAAGTGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCAGAGAACAGGAGGGCTGGGAAGAGTCCTGGTTTCTCAATCCTGACTGAGCATCTGAATCACCTGAGAAGCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACTAAAATGCAGATTCCCCGACCCCATCCCCTTAGAGTCAGAGTCTGTGCATTTAGGGTGCGGCCTTTCTCAGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGGATCGACTGAGACCTACTGAACCCTAGAAGTCTTTACCTGAGGCAGTTCCTGCAATGTACTGTATATTTCAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GACATTCCATGTAAAAGATGACAAGACCGAGACCGTTGAGTGACAGAGATAAGAACTGACTTATCTAAGGCTCC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACAGGTGGTAGATGGCAGAGCCGAGACCTGAGCCAATTATCTTTTCTCCTGCACTGTGCGGGGTAATACAGCTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GTTTAAAACAAGCTGGAGTCTCCATTCCGTTTTCCGCGTTGCTTCTCACAACTCACTGTTAGAATCCAGAAGTA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGAGAACCCGGGGAAGCGTAAGGAAGATGAATAGGACAAAGATTCTAAGAAGGTGGGAAGGAAGAAGGCTGCAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCTATTTCAAGTCTGGTGAATTTCAATCACTGTAGCCTTTATTGTTATTTTAGAGCCACCTAGACCAAAAGAGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGGAGCTCAAATTGCTGGTGAAAGAAGACTGCAGCTGAGTTCTATTATCAAAGCAAAGTGCTGTACTGTACTTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAATAACTCTAGCAAATACTGTGCTTCCTGCACAGAACCTGTTGGATTACTCACACAAATGTCAAAGAACAGGT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TGACATTTTAGCAAGTTATCAGCCTGGCCCATATAAAAAAAGACATTTCTAGTTTTTACACTTTGCAGGGTTCA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GAGAGCAGTTGAATGTTATTTTTAGTCTATGATCCAAAGCAGCTAATGACAGAGTCTACCTTAGAAGATAAACA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GGCTTCTGATTTATAACACAAGGCTAATGGTAGATATTGTGTGATGTGTCCAGTTAAATTAACGAAATAGCTTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCAACAGTGTGGAGTAAAGACTTAGGCTTAAAACAGAGAATTTGAGGATTGAGATAAGTCCAGAGAAGCAGCAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GATGGAGTGCAGATGCAAGAGAAAGGCTATGTCAATGCCATATTATAAATATAGCTCATAGACAGCATATCCTA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GTGTGTGTCTGAAGAGGCCTGTGCCCTTGAGGAAAGGGGAGATTATGACCTTGTCCCCCAGTGTCATTTGCATA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AATTCTTAGAGACCTTGGGGCAGTGAGTAGGAGACTGGTTGAGATGATTACTATAGGAAAATTGAATAACTTAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGTATGGATATCTTACTGTTACAGGAAATGCTTAGGAGGTGAGGTACTCTGAATTTAGAATATGATGGCCTAAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGATTCGGAGTCAAGAAGCAGGACATGGGATGAAGATACATCCACTGTCAAGCTGGTCATTACGACAGGGAGAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ATAGCCCTCCACAGAGTGAGACTAGTGAGACTTGCAAGAATTGAATGATGGTCCCGTTGGACGAAACTCTTTAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GGTGAGTTTGCTTGTCTGGGAAAGACAGAACTCAGAGCCCTAATTGAGATGAACTGCAAGATGGGTTCAGCAGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGAAAGTGGCTGGAAAGGGGGAGGGACCAGGAGCCAAATGGGTGACTATCTGCCAGGTGGTCTCCTGAGGGCAC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GCATCTTCCCTGGTGGTGTGACTAGAAAGAGGGAGTCCAAAGCACAGTCCCTTCTCCTCCACTTGGCACACATC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AACACTTTCCTCTTTTCCTGTGAGCCAAGGTAGAAGGTCTGGTCCAGAATGGACGATATGGGTGGAGGGGTGAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TCAGTATTGTTTTTCATGTTGGTGGTTGGACTCAGTTTAAAAGATGGATGTCTTAGGGTAGTAGGTAGCATAGT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTTCCTAGCTTTGTTGTCACAGGTGATAGAAGCTGGACCATAAGTTAGGGTCACAGCTCCCTTGATTCTCCTTC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTCTTTGTTCTCCTTCCTCTTTCACAACTCTCTCTCCTAGGTACTTTTAGTCAGGCTGCAGATGGAATTCTGGG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CGTTTGCTCCAGAGAGAATTTTCCTAGGTAGCTTTTGCGTTAAACAGACTTCATTATACATTTTGCTTTGCATG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GGGCCTCTCTCTCCTGACACAGATACATGGGCCCCTTGTAGCCCACAGCCCCCAGTGTCACACATTAGTGGCAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGGCTTGGTTTTGACATTGGTTCAAGGTACCCAGTGAAGAGCACTTTCTGTAAGAACAGTTCAATGGCAGGACC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CATAATGGTTATGAGCACGGAGGCCTCCAGTGCAGGAGCATCCGCAGTGGTTGCTGATCCCCAGAAGGGAGACG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TACTCTCTTTCTTTTTGTGTTTCCAAAGGCAAAGGCATACTCTTAGGAGGCAGACAGAAAGATGTACAGTTAAG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AAGTGGGGTTTTTAGGTTCTGTTAACAGCTGGTTTATTACCTTTTTTGGAACTTTCTCACCCTTTCTGCAGTGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AATAGGCTATTTCTCTATGTAGGAGTACACCTGTGGGGAAAAAAATGTGTGGAAACCTAGCTATTCCCCAAAAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GGAGCACAAAAAGAAGGACATCTGAGATTGCTGAATACTTTTCAGATGACAAAGAACTTAGAATGTTGAGAGGG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GACTTACAGGGAATGGGCTGATAAAAGACTTGAGTGTCATCTAGTATTTACCCCTTTCTCCTCCAACTTGAGTT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AGCTAAATACACACACACACACACACACACACACACACACACACACGAATATACCTGCTTATAATAAACGCTCT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AATCAACAAATCTACTGGATCATAAGCTCTGCCAAGGTAGCGCCTGTGGTGTTCCCTTTTTATCCTTAGCCTGT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AGCACCAGGCCTGGCACATAGATTCTTGGTAAATATCTACTGAGTGAATGAATTGTTGAACAGCTCGTAATGAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GAACTGATTCTGAGAATCTGTGGAATACTTCAAAAGAGAATGAATACAATGCATATATTAAAAGAGGAGGCAGT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CTGCAGCCACTGCCACCTCCGCCACCGCCAGCTGTGCGGGTGAGCATCCCCAGGCAGCACGTTGGAAGTTGTTT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TCAACCATATCCAGCCCTTGCCAAATACATCCTGTTTGTCACACATCCAAAGTGAGGTCCCTCCAGCTATAAGG 3256
Query 1 --------ATGGCGGAGAAG--TTTGACTGCCACTACTGCAGGGATCCCTTGCAGGGGAAGAAGTATGTGCAAA 64
|||||.|||||| ||||||||.|.||||||||||||.|||||||||.||||.|||||||||||.|
Sbjct 3257 TGGGCACCATGGCAGAGAAGTTTTTGACTGTCTCTACTGCAGGGACCCCTTGCAGAGGAAAAAGTATGTGCAGA 3330
Query 65 AGGATGGCCACCACTGCTGCCTGAAATGCTTTGACAAGTTCTGTGCCAACACCTGTGTGGAATGCCGCAAGCCC 138
|||.||.|||||||||||||||||||||||||||||.||||||||||||||||||.|||||||||.||||||||
Sbjct 3331 AGGGTGACCACCACTGCTGCCTGAAATGCTTTGACAGGTTCTGTGCCAACACCTGCGTGGAATGCTGCAAGCCC 3404
Query 139 ATCGGTGCGGACTCCAAGGAGGTGCACTATAAGAACCGCTTCTGGCATGACACCTGCTTCCGCTGTGCCAAGTG 212
|||..||.||||||||||||||||||||||||.|||.|||.||||||||||.|||||||||.||||||||||||
Sbjct 3405 ATCCATGTGGACTCCAAGGAGGTGCACTATAAAAACTGCTCCTGGCATGACCCCTGCTTCCACTGTGCCAAGTG 3478
Query 213 CCTTCACCCCTTGGCCAATGAGACCTTTGTGGCCAAGGACAACAAGATCCTGTGCAACAAGTGCACCACTCGGG 286
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||...||||||.||
Sbjct 3479 CCTTCACCCCTT-GCCAATGAGACCTTTGTGGCCAAGGACAACAAGATCCTGTGCAACAAGTTTGCCACTCAGG 3551
Query 287 AGGACTCCCCCAAGTGCAAGGGGTGCTTCAAGGCCATTGTGGCAGGAGATCAAAACGTGGAGTACAAGGGGACC 360
|||||||.||||||||.||||||||||||||||||.||||||||||||||||||| .|||||||||||||||||
Sbjct 3552 AGGACTCTCCCAAGTGTAAGGGGTGCTTCAAGGCCTTTGTGGCAGGAGATCAAAA-ATGGAGTACAAGGGGACC 3624
Query 361 GTCTGGCACAAAGACTGCTTCACCTGTAGTAACTGCAAGCAAGTCATCGGGACTGGAAGCTTCTTCCCTAAAGG 434
.|||.||||||||||.|||||||||||||.|||||||||||||||||.||||||||||||||||||.|||||||
Sbjct 3625 ATCTCGCACAAAGACCGCTTCACCTGTAGCAACTGCAAGCAAGTCATGGGGACTGGAAGCTTCTTCTCTAAAGG 3698
Query 435 GGAGGACTTCTACTGCGTGACTTGCCATGAGACCAAGTTTGCCAAGCATTGCGTGAAGTGCAACAAGGCCATCA 508
|.|||||||||||||.||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||.
Sbjct 3699 GAAGGACTTCTACTGTGTGACTTGCCATGAGACCAAGTTTGCTAAGCATTGTGTGAAGTGCAACAAGGCCATCG 3772
Query 509 CATCTGGAGGAATCACTTACCAGGATCAGCCCTGGCATGCCGATTGCTTTGTGTGTGTTACCTGCTCTAAGAAG 582
|||||.|.|||.||||||||.|||||.||||||||||||||||..|||||||.|||||||||||||||||||||
Sbjct 3773 CATCTTGGGGAGTCACTTACTAGGATGAGCCCTGGCATGCCGAGGGCTTTGTATGTGTTACCTGCTCTAAGAAG 3846
Query 583 CTGGCTGGGCAGCGTTTCACCGCTGTGGAGGACCAGTATTACTGCGTGGATTGCTACAAGAACTTTGTGGCCAA 656
|||||||.|||||.|||||||.||||||||||||||||.|||||.|||||||||||||||||||||||||||||
Sbjct 3847 CTGGCTGTGCAGCATTTCACCACTGTGGAGGACCAGTAATACTGTGTGGATTGCTACAAGAACTTTGTGGCCAA 3920
Query 657 GAAGTGTGCTGGATGCAAGAACCCCATCACTGGGTTTGGTAAAGGCTCCAGTGTGGTGGCCTATGAAGGACAAT 730
|||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3921 GAAGTGTGCTGGATGCAAGCACCCCATCACTGGGTTTGGTAAAGGCTCCAGTGTGGTGGCCTATGAAGGACAAT 3994
Query 731 CCTGGCACGACTACTGCTTCCACTGCAAAAAATGCTCCGTGAATCTGGCCAACAAGCGCTTTGTTTTCCACCAG 804
||||||||||||.||||||||||||||||||||||||.|||||||||||||||||||.|||||||||||||.||
Sbjct 3995 CCTGGCACGACTGCTGCTTCCACTGCAAAAAATGCTCTGTGAATCTGGCCAACAAGCACTTTGTTTTCCACGAG 4068
Query 805 GAGCAAGTGTATTGTCCCGACTGTGCCAAAAAGCTG-------------------------------------- 840
||||||||.|||||.||.|||||||||||||||.||
Sbjct 4069 GAGCAAGTATATTGCCCTGACTGTGCCAAAAAGTTGTAAACTGACAGGGGCTCCTGCCCTGTAAAATGGAATTT 4142
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4143 GAATTTTGCTCTTTGTGTCCTTACTCTCTGCCCTATACCATCAATGGGGAAGAGTGGTCTTTCCCCTCTTTAAA 4216
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4217 GGTCTCCTGTCTTTTCTCCCGTTTTACAGTATTACTCAAATAAGGGCACACAGTGATCATATTAGGATTTAGCA 4290
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4291 AAAAGCAACCCTGCAGCAAAGTGAATTTCTGTCCAGCTGCAACTGAAAAACGAAAATTTAAGTAGATTGACTCT 4364
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4365 TCTGCATGTTTCTCACAGAGCAGAAAAGTGCTAGTCATTTAGCCACTTAGTGATGTAAGCAAGAAGCATATGAG 4438
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4439 ATAAAGCCCCCACTGAGATGCCTCTTGCGGCTCAGCTGGGACCTACCGTGTAGTCACGCGACATGCAAGAGTTG 4512
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4513 TAGTGGCTGCTTCAACTCGCTGCTCACCCTCTTCTGTGAGCAGGAAAAGAACTTACTGACGTGCATGATTTAAC 4586
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4587 TTCCTCATCAAAACTCTGACCTTCCTTCTGTTATTTTGTGCTTTCAAATGACTAATATGCACTTCCAGAAAATT 4660
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4661 AACATTTGAACTTAGCTGTAATTCTAAACTGACCTTTCCCCATACTAATGTTTGATTTCCCCATGTGGCATGTT 4734
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4735 TTCTGAGTGTTCCTACCTTAAAGCATGGAACATGCAGGTGATTTGGGAAGTGTAGGCAGATCTGAGAAAACGAG 4808
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4809 CCTGTTTCAGAGGAACATTGTCACAGCAAATACTTCTGGAAACTTAACAAAACCAACCCTGATGTCCTTTTTAT 4882
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4883 TGTTTTTAATTAGGAATATTTTTGTTTTAATTGATAGCAAAATAGTTTATAGGTTTGGAAACATCCATGAAAAT 4956
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4957 ATTCTATTTATTTTATTTTATTATTATTATTATTTTTTGAGACGGAGCCTTGCTCTGTCGCCCAGGCTGCAGTG 5030
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5031 CAGTGGCGCATTCTCAGCTCACTGCAACCTTCGCCTCCCAGGTTCAAGCAATACTCCTGTCTCAGCCTCCTGAG 5104
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5105 TAGCTGGGACTACAGGCATGCGCCACCACACCCAGTTAATTTTTGAATTTTTAGTAGAGATGGGGTTTCAACAT 5178
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5179 ATTGGTCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCACCTAGGCCTCCCAAAATGTTGGCATTAC 5252
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5253 AGGCGTGAGCCGCCATGCCTGGCCTGCATGAAAATATTCTAGCCCTTTCAGATGTTCCTGTAGTGTTGAAATTC 5326
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5327 ATCCTATGGAAGTAACTGCAAAACTCTATAGGGGGAGTTGAGCAGGTGCCAGGACTGTCATCAACATGGATATG 5400
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5401 ACAGTACAGAGCAGTGGTGAGTTGAATCCCTTGTAACGCAGTTGTCTGCTCTTTGTCCATGTGTTAATGAGGGC 5474
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5475 TGCAAAGTCCCTCCTATAGCGATTCCTAGGAATTTTCCTCAAGAGGAAATGCGGATTTCCACCTACCACTTACC 5548
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5549 TGAAATACAGGATCACCTACTTACTGTATTCTACATTATTTTATGATATAATGAGACAATATCAAAAGTAAACA 5622
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5623 TGTAATGACTATGTGTACTAACATTCTTGTAGGAGTGGTTAGAGAAGCTGATGTCTCATTTCTACATTCTGTCA 5696
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5697 TTAGCTGTTATCGTCTAATGTTTCAGTGTATCCTTATGGAAATAAAGCAGCATATGAATTTAAAAAAAGAGGAG 5770
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5771 GATTAGTCCAGGAACTACAGAATGATTAACTTACTTTTATACTGTAAAAAAGTTAGTATCCCCATGATGTTTCT 5844
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5845 CCAAAATAGTTTGAAAATAATTAGAAGAATTATAAATTATAGTGTGTCTCTCCTCTCTTACCAAGGACTAAGGG 5918
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5919 CTAAAGTATCGACATACCTCATTTTACTGTGCTTTGCAGATATGGCATGTTTTACAAATGGAAGGTTTGTGGGA 5992
Query 841 ----------------------------------------------------------------- 840
Sbjct 5993 ACCCTGAGTTGAGTAAATCTATTGGCGTTGTTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 6057
