Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00980
- Subject:
- XR_001740146.2
- Aligned Length:
- 5673
- Identities:
- 1110
- Gaps:
- 4563
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTCTTTTCACTGCAGCTGAATGAGTTGTGGCGCCCACAATGCTCCCATGACAAGGAGCTGACAAGTTCCATTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCGTCGCGGGCATCTTGGAATCATGACTCCCACAATGCCTTGGGCACTTGGTCGACAGTGGGGCCGCCTCTGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAAAAAAATGTGAGAGGTTGGTACTAAGAAGTGCCTTTCCTGACGTCTCTGCTGCTTGGAACCGCTTCTAGAGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGTCTCTGCTTTTGCCTTGCTTGCTGCCAGCTAGACTGTGACGACAGCACATCCACCCTCCACCTCTAGCCCAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACACCCCCATTTCTACTTATAATCAAGAGAAAAGCTCTAAGTATCTGGCATTGCCCTAGGCTGCTTTAGTGTTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAAGAAAAGTTTGCTGAAAAAGTAAGATATCTTCTGCCAGGAAATCAAGGAGGAAAAAAAAAATCATTTTCTCG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTTGCTCTAAACTGCTGCATCTGTCTATGCCAAACTAATCAATACCGATTGCACCACCAAACTCCATTGCAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATTCAGCTGTGAGGAGATTCCCTTTCAGACAACTTTGCTGAAAGCAGCTTGGAAATTCGGTGTCGAAGGGTCTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCACGTTTTCATGCTTGCATTTTGGGCTCCAAATTGGCACTGGGAAGGGGTTACTGAGAGCACAAGGCTGATAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAGGCCCTACTTTTAAACGTTCATCTACTTACAATCCTAGTATTTCTCTAAAAACCAAAACCTCTTTGAATTAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAGTTTCATGCTGTGAATTTCTAGTGGGAGATCTTTTCCTTGATATTGACGACACAATTTTCCATGTACTTTTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGCAGGGAGTGGGGAAAAGTATTTTGAGGGGACATTTTCATCATCAGTTCAGCTTTTTTTTTTTGGTTGTTGC 888
Query 1 -----------------------------------------------------------------ATGGCTGTT 9
|||||||||
Sbjct 889 TCTTTTTTGGGGGGGTTGGGTTTGTTGGTTTCACTGAAACATTTAACTACCTGTAAAATCTAAACATGGCTGTT 962
Query 10 AGTGTCACACCAATTCGGGACACAAAATGGCTAACACTGGAAGTATGTAGAGAGTTCCAGAGGGGGACTTGCTC 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGTGTCACACCAATTCGGGACACAAAATGGCTAACACTGGAAGTATGTAGAGAGTTCCAGAGGGGGACTTGCTC 1036
Query 84 ACGGCCAGACACGGAATGTAAATTTGCACATCCTTCGAAAAGCTGCCAAGTTGAAAATGGACGAGTAATCGCCT 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ACGGCCAGACACGGAATGTAAATTTGCACATCCTTCGAAAAGCTGCCAAGTTGAAAATGGACGAGTAATCGCCT 1110
Query 158 GCTTTGATTCATTGAAA--------------------------------------------------------- 174
|||||||||||||||||
Sbjct 1111 GCTTTGATTCATTGAAAGCCAGAGCCACGCATTTTATGGAAAATGTAACTAGAAGTAAGGTGCTGAACTGCTGC 1184
Query 175 ------------------------------------GGCCGTTGCTCCAGGGAGAACTGCAAATATCTTCATCC 212
||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TACAGCACCTTACCTGAGGCACAAACTTTGTTGCATGGCCGTTGCTCCAGGGAGAACTGCAAATATCTTCATCC 1258
Query 213 ACCCCCACATTTAAAAACGCAGTTGGAGATAAATGGACGCAATAACTTGATTCAGCAGAAGAACATGGCCATGT 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACCCCCACATTTAAAAACGCAGTTGGAGATAAATGGACGCAATAACTTGATTCAGCAGAAGAACATGGCCATGT 1332
Query 287 TGGCCCAGCAAATGCAACTAGCCAATGCCATGATGCCTGGTGCCCCATTACAACCCGTGCCAATGTTTTCAGTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TGGCCCAGCAAATGCAACTAGCCAATGCCATGATGCCTGGTGCCCCATTACAACCCGTGCCAATGTTTTCAGTT 1406
Query 361 GCACCAAGCTTAGCCACCAATGCATCAGCAGCCGCCTTTAATCCCTATCTGGGACCTGTTTCTCCAAGCCTGGT 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GCACCAAGCTTAGCCACCAATGCATCAGCAGCCGCCTTTAATCCCTATCTGGGACCTGTTTCTCCAAGCCTGGT 1480
Query 435 CCCGGCAGAGATCTTGCCGACTGCACCAATGTTGGTTACAGGGAATCCGGGTGTCCCTGTACCTGCAGCTGCTG 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CCCGGCAGAGATCTTGCCGACTGCACCAATGTTGGTTACAGGGAATCCGGGTGTCCCTGTACCTGCAGCTGCTG 1554
Query 509 CAGCTGCTGCACAGAAATTAATGCGAACAGACAGACTTGAGGTATGTCGAGAGTACCAACGTGGCAATTGCAAC 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CAGCTGCTGCACAGAAATTAATGCGAACAGACAGACTTGAGGTATGTCGAGAGTACCAACGTGGCAATTGCAAC 1628
Query 583 CGAGGAGAAAATGATTGTCGGTTTGCTCATCCTGCTGACAGCACAATGATTGACACCAATGACAACACAGTCAC 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CGAGGAGAAAATGATTGTCGGTTTGCTCATCCTGCTGACAGCACAATGATTGACACCAATGACAACACAGTCAC 1702
Query 657 TGTGTGTATGGATTACATCAAAGGGAGATGCTCTCGGGAAAAGTGCAAATACTTTCATCCCCCTGCACATTTGC 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TGTGTGTATGGATTACATCAAAGGGAGATGCTCTCGGGAAAAGTGCAAATACTTTCATCCCCCTGCACATTTGC 1776
Query 731 AAGCCAAGATCAAGGCTGCCCAATACCAGGTCAACCAGGCTGCAGCTGCACAGGCTGCAGCCACCGCAGCTGCC 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AAGCCAAGATCAAGGCTGCCCAATACCAGGTCAACCAGGCTGCAGCTGCACAGGCTGCAGCCACCGCAGCTGCC 1850
Query 805 ATGGGAATTCCTCAAGCTGTACTTCCCCCATTACCAAAGAGGCCTGCTCTTGAAAAAACCAACGGTGCCACCGC 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 ATGGGAATTCCTCAAGCTGTACTTCCCCCATTACCAAAGAGGCCTGCTCTTGAAAAAACCAACGGTGCCACCGC 1924
Query 879 AGTCTTTAACACTGGTATTTTCCAATACCAACAGGCTCTAGCCAACATGCAGTTACAACAGCATACAGCATTTC 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 AGTCTTTAACACTGGTATTTTCCAATACCAACAGGCTCTAGCCAACATGCAGTTACAACAGCATACAGCATTTC 1998
Query 953 TCCCACCAGGCTCAATATTGTGCATGACACCCGCTACAAGTGTTGTTCCCATGGTGCACGGTGCTACGCCAGCC 1026
|||||||| ||||||||||||||||||||||||||||||
Sbjct 1999 TCCCACCA------------------------------------GTTCCCATGGTGCACGGTGCTACGCCAGCC 2036
Query 1027 ACTGTGTCCGCAGCAACAACATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCA--------- 1091
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 ACTGTGTCCGCAGCAACAACATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCAGCCCCATCC 2110
Query 1092 -------------------------------------------------------GATACCCATAATATCTGCC 1110
|||||||||||||||||||
Sbjct 2111 TTGATGCTTCTACACTGTTGGGTGCAACATCCTGTCCTGCAGCAGCAGGAAAAATGATACCCATAATATCTGCC 2184
Query 1111 GAACATCTGACTAGCCACAAGTATGTTACCCAGATG-------------------------------------- 1146
||||||||||||||||||||||||||||||||||||
Sbjct 2185 GAACATCTGACTAGCCACAAGTATGTTACCCAGATGTAGAATTTTCATCACTAAACAATCATGCTAAAGAGGAA 2258
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 2259 AGGACAGTGTGCTTGGTTAGAGTAAAGGACGAGGTCATTAGCCATATTGTATATATCGTCAAGCAACACACACA 2332
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 2333 AAAGTTCCTCAGCCACAAGACATCCACATATTGCATGTTAACCAGAAGAAAAGACAACATTTTCCGGAAATCCA 2406
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 2407 CTGCACACTGTTGCCTATACACTTTGTACATTTAATTGATATTTGTGCTGAGGTGATATTCCTGTCTAAAAGAA 2480
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 2481 CAACATTGTCTTTCTTTTCTAGCACAGAGTTATGCATTCAAAGATGCATACCTAGTTAGTTTCCTATATATTCA 2554
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 2555 TGCCATCTTGAAAAGACAGACTATGGTGTAACCATGATTCTATTATGTATTGGTACGTCTGTAGACCAAGATAT 2628
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 2629 AATTTTTTAAAAATAAGTTTATTTCTTTCAAGGTTTACAAATAACAAAGGTGCACCTTGTATTTAAAATTGCCA 2702
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 2703 TTATAGATGAGAGCGTGCATGCACAGTCATTTTTGTTTAAGAGTAATATTTTTAATGTAATAGATTGTAAGACG 2776
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 2777 TGGTGAGGGAGGGATCTGACAGAGATGAATGTGCCAAGCAAAACCACAACTGTGTATATTTTAAAGCACATCAT 2850
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 2851 GGCTTTAAGTACCATGTTGTTAAGGATTCTCATGAAGTGCCATAGACTGTACATCAAATTAGAGTATTATTTCT 2924
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 2925 TCAGTGTTATTGTTTTCAGAGCCACATTTTGTTGCATATTTGCTAGTACTAATCAGTCAAAGGGCACCATTCTT 2998
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 2999 TTTTTTTTTTTTTGAAACCAAAGCTGTCTCAGAAATGGCCAATTTAACTTTACAGTAACAATAGACAGCACAAC 3072
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 3073 ACAAACTCTCTCAATACAGATAAACTCACACATACTGGAGATATATATATAATAGATATATATAAAATTATTTT 3146
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 3147 AATGCATTGTAGTGTAATATTTATGCATACTATACTGTATAACATGTTATTCAAAAGGGATTGCCATTTCTGAG 3220
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 3221 ACACAGTAACAAAAAAATGAGGAAATTATTTTGCTTCTATTTATAGCCTCTGTCAAAAGTCAAAAGACTATAAA 3294
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 3295 TGCTTTGCAAAAATGGTTTCACGTTTGCTTAAATGCTTCATCACAGTCACATTCAAAATAGTGACTCTAAACAA 3368
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 3369 AGAAGAAAGCAGCACTGTCATCAGATGCATGATAAACCAAAATATGAAAATGGGAAATGTTTAATTAACCTAGT 3442
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 3443 AATTGGGTGGGTTAAGTACATGGGTGAATTTTATATGTGATTTTTGTTTTGTTTTGTTTTGTTCAGATTAACTG 3516
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 3517 CTTATAGCCTTAGAAAGCCTTTTACAAAATTAAAAAAAAAATAGATGTGCATTCAGTTTTTAAGAATGGAATCA 3590
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 3591 TCCAAAGGAATTCCTTTTTTTGAGGTTTGGATGTTGCAGCTAGTAAAGGATATTTTTGCTCTGTTCAGCAGTTC 3664
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 3665 TAAAAATTGCTGAAGTAGGGGCCAGGTCACTGGTAGTTATAGTATGGAATGGGAGAAGTGAAAGTTCAGTTATA 3738
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 3739 GAACTTTCCATACTTCCAAGTTTACTGCAAGTTTTTATGCTTGAGAGAGATGCTTTCTAATATAAGACTGATGT 3812
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 3813 GTTGATTTTACTGATTGTACTGTACATCTATTAAAGCCTTAGATTATTACATTACGGGTTGGAACCCATACCAA 3886
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 3887 TGTAATTTCAATCGTGTTAAGAAAGTAATGGTGACTTCACATGTTATTGTAGTTAGTTACATTATAGAATATTA 3960
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 3961 CTTATTTTTCTTGTTAAAATGTAGTTTTTCATTTCCTACATTTATTAGATTTTCATTTTCTATTAACAATTGAA 4034
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 4035 TACCATTTCAGTTTATAGACTTGTTTTATTAGATTTTACCAATGAATTTTTCAAAATACAAAAAAAAGTAGTTT 4108
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 4109 TTCCTTCATAACATACTCAGTTTTGAATTACATGTAGTGTCACATGAATATTCGTATTGTTAACTAAATGATTT 4182
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 4183 ATATTTTACTGATTTAATATTACAGTGTAAGAATGTCAGTCATTGTTAGTTCTTGTCTAGTTTTCATTAAAAGA 4256
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 4257 ACAAAGATCTTTTATATGGATATCTTATAAATATATAATCATTGCTAAGTAAGAAGTTAAGTTGTTGCTATCGC 4330
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 4331 AACAATCCTGGCAGACAATTGAGTAATATTTTGATGATTTATTTTGTTTGTAATTAGTTATTATAAGAAGATCT 4404
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 4405 AGATCCTAGATATTAGAATAAAATTTATTTTCTACTGTATCCATTTCAAATGTTAAAATATTGTTTAATATTTT 4478
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 4479 TGAAATCCCTGAGTATCAGGCCTTGTTATAAATAAGCTGCATAATCAATAAATAGAACAAGGGACTTTTTGTTG 4552
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 4553 ATAATCCAAATACTCAAAGTTTACGTAATGAAAATTATAGCGTGTGTGCAAACTCTTGAGGGTTGATTATGCTG 4626
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 4627 CAATTTAGCATGTTGGAACGTCTAGGGAGAAGGTTGACTTTTTGCACTTCTGTATATAGTCAAAAGAGAGAAAC 4700
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 4701 CTGTATAATAGTAAGATCTTATTTTGAATAAAAACGTCTATAATTACAAGGAGTTTTGTTAAGGCTAATACAAT 4774
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 4775 GACAGACTGAGCAAAATTGCTTGCAAAAGTGGCACAGAGTTAGCACTCCATACCCCTTCAAACATGTTGCTTTG 4848
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 4849 CTTTCTTGTGGACAGCTTGTAGTTTGCCAGGATTTTTTCAGCTGGAAAGATACGCCATCCTTTCAAACCCTCAT 4922
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 4923 GACTGACAAAAACTCCATGGGGCCAAATCTGCCTGAAGATCATTACCAAAAATAGCAGGTACTTCTACCATTAA 4996
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 4997 GGTGAAATCATGGATCAGATATTCCTTACATTTTTCAAAACTACTGCATGTTTAAAACTTCAACAAAAAAAGAG 5070
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 5071 AGAAAGAACTATACTAAGAACATATATTATTCAGATCAGTTTCTGCCAATTTCAGTGGTTTATTGTTCACAAAA 5144
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 5145 AAATCTTCAAAACAAGTATTGACTTTCACAAAATTTAAATCATAAACAGGCAAACCAAACAGCACACTGTAGCT 5218
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 5219 ATAGTTGTTATGTGATTGTTTTTTAATTGCTGTAGGATCCTGTTCTTTCAGCAGGTGAAAAATAAAACGCAGTT 5292
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 5293 CAAATTTCATGGTTTTAATTTTCAACTCAGAAGCACTCAAAAATGCAAAATGTGATAATGGGCACTTGTTTAAA 5366
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 5367 AGAATTAGTGTATCCAGCCTTCACTCCAGCTGGTTAAAAATGTTGCACTTATCAGCAACCCTACCACTTTCATC 5440
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 5441 TGCTGAAAGGACAAATGTGCTTGGTTTTACTATTATGTAATCACAACTTACTTTCTGCTTGTAGTTGCTTAAAA 5514
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 5515 TTATGTATTTTGTCTTGGGCTGCAATTTGTTTTATGCTTATTTTATTATTACTGCAGTAGTTGACTTTGCTGTA 5588
Query 1147 ------------------------------------------------- 1146
Sbjct 5589 TGGAAAAATAAAGTGAAATTGCCCTAATAAAACTTCTCTTTCTTAAGTA 5637