Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00980
- Subject:
- XR_001740148.2
- Aligned Length:
- 2564
- Identities:
- 1110
- Gaps:
- 1454
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTCTTTTCACTGCAGCTGAATGAGTTGTGGCGCCCACAATGCTCCCATGACAAGGAGCTGACAAGTTCCATTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCGTCGCGGGCATCTTGGAATCATGACTCCCACAATGCCTTGGGCACTTGGTCGACAGTGGGGCCGCCTCTGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAAAAAAATGTGAGAGGTTGGTACTAAGAAGTGCCTTTCCTGACGTCTCTGCTGCTTGGAACCGCTTCTAGAGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGTCTCTGCTTTTGCCTTGCTTGCTGCCAGCTAGACTGTGACGACAGCACATCCACCCTCCACCTCTAGCCCAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACACCCCCATTTCTACTTATAATCAAGAGAAAAGCTCTAAGTATCTGGCATTGCCCTAGGCTGCTTTAGTGTTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAAGAAAAGTTTGCTGAAAAAGTAAGATATCTTCTGCCAGGAAATCAAGGAGGAAAAAAAAAATCATTTTCTCG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTTGCTCTAAACTGCTGCATCTGTCTATGCCAAACTAATCAATACCGATTGCACCACCAAACTCCATTGCAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATTCAGCTGTGAGGAGATTCCCTTTCAGACAACTTTGCTGAAAGCAGCTTGGAAATTCGGTGTCGAAGGGTCTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCACGTTTTCATGCTTGCATTTTGGGCTCCAAATTGGCACTGGGAAGGGGTTACTGAGAGCACAAGGCTGATAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAGGCCCTACTTTTAAACGTTCATCTACTTACAATCCTAGTATTTCTCTAAAAACCAAAACCTCTTTGAATTAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAGTTTCATGCTGTGAATTTCTAGTGGGAGATCTTTTCCTTGATATTGACGACACAATTTTCCATGTACTTTTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGCAGGGAGTGGGGAAAAGTATTTTGAGGGGACATTTTCATCATCAGTTCAGCTTTTTTTTTTTGGTTGTTGC 888
Query 1 -----------------------------------------------------------------ATGGCTGTT 9
|||||||||
Sbjct 889 TCTTTTTTGGGGGGGTTGGGTTTGTTGGTTTCACTGAAACATTTAACTACCTGTAAAATCTAAACATGGCTGTT 962
Query 10 AGTGTCACACCAATTCGGGACACAAAATGGCTAACACTGGAAGTATGTAGAGAGTTCCAGAGGGGGACTTGCTC 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGTGTCACACCAATTCGGGACACAAAATGGCTAACACTGGAAGTATGTAGAGAGTTCCAGAGGGGGACTTGCTC 1036
Query 84 ACGGCCAGACACGGAATGTAAATTTGCACATCCTTCGAAAAGCTGCCAAGTTGAAAATGGACGAGTAATCGCCT 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ACGGCCAGACACGGAATGTAAATTTGCACATCCTTCGAAAAGCTGCCAAGTTGAAAATGGACGAGTAATCGCCT 1110
Query 158 GCTTTGATTCATTGAAAGGCCGTTGCTCCAGGGAGAACTGCAAATATCTTCATCCACCCCCACATTTAAAAACG 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GCTTTGATTCATTGAAAGGCCGTTGCTCCAGGGAGAACTGCAAATATCTTCATCCACCCCCACATTTAAAAACG 1184
Query 232 CAGTTGGAGATAAATGGACGCAATAACTTGATTCAGCAGAAGAACATGGCCATGTTGGCCCAGCAAATGCAACT 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CAGTTGGAGATAAATGGACGCAATAACTTGATTCAGCAGAAGAACATGGCCATGTTGGCCCAGCAAATGCAACT 1258
Query 306 AGCCAATGCCATGATGCCTGGTGCCCCATTACAACCCGTGCCAATGTTTTCAGTTGCACCAAGCTTAGCCACCA 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGCCAATGCCATGATGCCTGGTGCCCCATTACAACCCGTGCCAATGTTTTCAGTTGCACCAAGCTTAGCCACCA 1332
Query 380 ATGCATCAGCAGCCGCCTTTAATCCCTATCTGGGACCTGTTTCTCCAAGCCTGGTCCCGGCAGAGATCTTGCCG 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 ATGCATCAGCAGCCGCCTTTAATCCCTATCTGGGACCTGTTTCTCCAAGCCTGGTCCCGGCAGAGATCTTGCCG 1406
Query 454 ACTGCACCAATGTTGGTTACAGGGAATCCGGGTGTCCCTGTACCTGCAGCTGCTGCAGCTGCTGCACAGAAATT 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ACTGCACCAATGTTGGTTACAGGGAATCCGGGTGTCCCTGTACCTGCAGCTGCTGCAGCTGCTGCACAGAAATT 1480
Query 528 AATGCGAACAGACAGACTTGAGGTATGTCGAGAGTACCAACGTGGCAATTGCAACCGAGGAGAAAATGATTGTC 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AATGCGAACAGACAGACTTGAGGTATGTCGAGAGTACCAACGTGGCAATTGCAACCGAGGAGAAAATGATTGTC 1554
Query 602 GGTTTGCTCATCCTGCTGACAGCACAATGATTGACACCAATGACAACACAGTCACTGTGTGTATGGATTACATC 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GGTTTGCTCATCCTGCTGACAGCACAATGATTGACACCAATGACAACACAGTCACTGTGTGTATGGATTACATC 1628
Query 676 AAAGGGAGATGCTCTCGGGAAAAGTGCAAATACTTTCATCCCCCTGCACATTTGCAAGCCAAGATCAAGGCTGC 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AAAGGGAGATGCTCTCGGGAAAAGTGCAAATACTTTCATCCCCCTGCACATTTGCAAGCCAAGATCAAGGCTGC 1702
Query 750 CCAATACCAGGTCAACCAGGCTGCAGCTGCACAGGCTGCAGCCACCGCAGCTGCCA------------------ 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CCAATACCAGGTCAACCAGGCTGCAGCTGCACAGGCTGCAGCCACCGCAGCTGCCATGACTCAGTCGGCTGTCA 1776
Query 806 ------------------------------------TGGGAATTCCTCAAGCTGTACTTCCCCCATTACCAAAG 843
||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AATCACTGAAGCGACCCCTCGAGGCAACCTTTGACCTGGGAATTCCTCAAGCTGTACTTCCCCCATTACCAAAG 1850
Query 844 AGGCCTGCTCTTGAAAAAACCAACGGTGCCACCGCAGTCTTTAACACTGGTATTTTCCAATACCAACAGGCTCT 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 AGGCCTGCTCTTGAAAAAACCAACGGTGCCACCGCAGTCTTTAACACTGGTATTTTCCAATACCAACAGGCTCT 1924
Query 918 AGCCAACATGCAGTTACAACAGCATACAGCATTTCTCCCACCAGGCTCAATATTGTGCATGACACCCGCTACAA 991
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 AGCCAACATGCAGTTACAACAGCATACAGCATTTCTCCCACCA------------------------------- 1967
Query 992 GTGTTGTTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAACATCTGCCACAAGTGTTCCC 1065
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 -----GTTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAACATCTGCCACAAGTGTTCCC 2036
Query 1066 TTCGCTGCAACAGCCACAGCCAACCA------------------------------------------------ 1091
||||||||||||||||||||||||||
Sbjct 2037 TTCGCTGCAACAGCCACAGCCAACCAGCCCCATCCTTGATGCTTCTACACTGTTGGGTGCAACATCCTGTCCTG 2110
Query 1092 ----------------GATACCCATAATATCTGCCGAACATCTGACTAGCCACAAGTATGTTACCCAGATG--- 1146
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2111 CAGCAGCAGGAAAAATGATACCCATAATATCTGCCGAACATCTGACTAGCCACAAGTATGTTACCCAGATGTAG 2184
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 2185 AATTTTCATCACTAAACAATCATGCTAAAGAGGAAAGGACAGTGTGCTTGGTTAGAGTAAAGGACGAGGTCATT 2258
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 2259 AGCCATATTGTATATATCGTCAAGCAACACACACAAAAGTTCCTCAGCCACAAGACATCCACATATTGCATGTT 2332
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 2333 AACCAGAAGAAAAGACAACATTTTCCGGAAATCCACTGCACACTGTTGCCTATACACTTTGTACATTTAATTGA 2406
Query 1147 -------------------------------------------------------------------------- 1146
Sbjct 2407 TATTTGTGCTGAGGTGATATTCCTGTCTAAAAGAACAACATTGTCTTTCTTTTCTAGCACAGAGTTATGCATTC 2480
Query 1147 ------------------------------------------------ 1146
Sbjct 2481 AAAGATGCATACCTAGTTAGTTTCCTATATATTCATGCCATCTTGAAA 2528
