Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_01339
Subject:
NR_040414.1
Aligned Length:
2261
Identities:
272
Gaps:
1961

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTGGTGTTCTGTATGCTTCCTGTTCCTCGACAGGCATCCCTATTCTAGTCCCTAAATTTCTCACTTGCAGATT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCCCTCCATTTGGGTTTTCTTTATTCTTTTTCTACTTTCAGGTCTGAAACTGTTTTAGTCACTTCCACGGTTTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGTTGTCACAGATTCTTCAAGGGATTTCTCTGTTTCCTCATTAAGGAAGACCTCCATCATTTTCATAAAGGCTA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTTCAAGGTTTTGTCCTGTGTTTTAGCTATGTTTTCCTTGGAGCCTACTATAGCAGGGATGCTGGGCTCTAGTG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TAAACATATCATTGTATTTTTACACTGACATCTAGGCATCTGGGATTGGGAAAGTTGTAATTTTAGGTGCTGGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATCTGGTCGGGTCTTTGTTGGGTCCATGTGTTGTTCCTTGGTTTCTGTCATCCCCTTGGCTCTCAGGAGAGTGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGTTGCTGTGTGTTGCCTGATAGAAAATTCTTCTGGGGTCCCAATGGGTGTGGGCACTGGGGGCTCCGGGTAAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ATGTGTTTCTGGGTATCAGGAGCTGACACTTGGGAGTGGGGATGGGCTGGGGCAGGGTGAGGAGTCCACAGGTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GGAGGGAAGCAGGGTGTTCACCGGGGTCTGCTTAGTGCCCTGGGAATGGAGGCAGAGCACGAGGAGAGGATGCA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ATAGGTAGCCTATTACAGAATCGGGGATGAGACCAGGGAGTCAATTTGTAGAAGAGGAGCAAGTGTGATGATCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AAAGCTTGCCTACCCACTTCACTGACCTACTTCACTGGCAGGCTTGGCTTGAGGGTTCCAGAGAAAGCTTGCAA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TGGGATAAAGCAATAAATGGGGGAGAAGAAAGGCTGAAAGAGAAGATCTATGTGATCGGGTGGGGGGGGGGCAG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GAGAGGAGGCATGGCTGCAGTAGGTGGTTTGTGTTGTGGGGTATCAACCAGAGAAAACTGCTCAGACATGGATT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TAAGCAATAGACAGTCTTGATCAGTGGCCTGGTTACTACACTGGGTGGTCAGGATCCCAGTGTACCCCGAGCCT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TTCTCAGGGTGAGTTTCTAAGCATAAACAACATGTTCTGGGTTGACATACTTCATTTAACAAGAACAGTTAGCC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AGAGGCAAAACTACAGAAACCAAAAAGCATGGTGGATACATTTGGAGACATCCCCAGAAGTCTGGACTTTTAAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GAATTATTTTTGTTTTCATTTTATCATGTGGTGCTATGTGCTGAGTTTTATGGCCCGAATAGTAGTTCCATCAT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GGAGTCGGTTGTGCTAGGCCAGAGTCCTCGAACTCGACTTTAATTCCCTCACTCGCGGCATCGGACCACCGTCG  1332

Query    1  -------------ATGTCAGACGCAGCCGTAGACACCAGCTCCGAAATCACCACCAAGGACTTAAAGGAGAAGA  61
                         ||||||||||..||.||.|||||||||||.||.|||||||||||||||||.||.||||||.
Sbjct 1333  TGCCCCACCCACCATGTCAGACGAGGCAGTGGACACCAGCTCTGAGATCACCACCAAGGACTTGAACGAGAAGG  1406

Query   62  AGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCT---AATGAGGAAAATGGG  132
            |||||||||||||.||||||||.|.|||||||||.||.|||||.||.|||||.|||   |||||||||||||||
Sbjct 1407  AGGAAGTTGTGGAGGAGGCAGAGAGTGGAAGAGATGCACCTGCCAATGGGAACGCTCAAAATGAGGAAAATGGG  1480

Query  133  GAGCAGGAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGG  206
            |||||||||||||.||||||||||||.|||||||||                              ||||||||
Sbjct 1481  GAGCAGGAGGCTGGCAATGAGGTAGATGAAGAAGAG------------------------------GAAGAAGG  1524

Query  207  TGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATG  280
            |||||||||||||||||||||||||||||||||||||||||||.|..|||||||||||||||.||||||.||||
Sbjct 1525  TGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGGCTCCTACGGGCAAGCGGGTAGCTGAGGATG  1598

Query  281  ATGAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGAC------------------------  330
            |||||||||||||.|||||.||||||||||||||||||||.|||||.|||                        
Sbjct 1599  ATGAGGATGACGACGTCGACACCAAGAAGCAGAAGACCGAGGAGGACGACTAGACAGCAAAAGGAAAAGTACCC  1672

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 1673  TTAAGCACCGTGACCTATTCACCCTCCACTTCCCGTCTCAGAATTTAAACGTGGTCACCTTAGAGTAGAGAAGC  1746

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 1747  AGACCCCGCCCACCCACAGCGGGCAATGCCACCCACAGATATGACATGTGCTCTCCACCACCCCACCAAAACTA  1820

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 1821  CAACATGAATTGGCAACATGGGAGGAAAAAAGAACCAGAACTTCCCAGGCCCTGCTTTTTTTCTTAAAAATACT  1894

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 1895  TTAAAAGGAAAATTTGTTTGTATTTTTTACATTTTATATTTTTGTACATATTGTTAGGGGTCAGCCATTTTTAA  1968

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 1969  TAATAACGGGTGACCAAACCAGCCTTCAGAGCGTTTTCTGTCCTACTTCAGACTTTACTTGTGGTGTGATCATG  2042

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 2043  TTCATTATAATCTCAAAGGAGAAAAAAAAAAACCTTGTAAAAAAAGCAAAAACAACAACAACAAAGCAATCTTA  2116

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 2117  TTCCGAGCACTCCAGTAACTTTTGTATATGTACCTAGCTGTACTATAAGTAGTTGGTTTGTATGAGATGATTAA  2190

Query  331  -----------------------------------------  330
                                                     
Sbjct 2191  AAAGGCCAAAGATAAAAAGATTTTTTTTTCTTTTTCTTTCT  2231

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