Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_01339
Subject:
XR_001781889.1
Aligned Length:
2908
Identities:
273
Gaps:
2599

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TGACTAGAGTATCTGTGGGTGAGGACATTAGGTTGGAGGAAGGGACGTGGCATAAGCTGTTCAGCCATCAAAAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCAGCAGCATGCACAGAGACCCCATGCCACAGTTTCCTTGCTTCCTGTCCTAAGAGGAGACTGCTGTGCTCTCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CACTCTCTGCACTGCTGCTAATATGTCTGCAACGTGGCCGAACTCTAGAGCCCTCTTGAAAGTTTTGTGGTTTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TTGTAACATGAGACAAAGTAAATCCAGATGGAGGGAGTTCTACTAAGTTAGGCCGTCTAAAATCTTACCATATG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TTATATTGAAACAGAACAAACTCTCATCTTCTGGGTTGAATAGATTTTAGACTTTTCATTTTGATAACTACTCA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCTGTCAGCAATTCATGTTCCTTATAACTTTGGCTCCGTGGAAAAAACAGCTCCACTGAGCAGTGTGTTAGTGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCAGAACATTGCCTATGTCAGTGGAACCTTTTGTCTATTCCTCAGATTTTCTTTGTGTCTTCTCTTTACTCGTT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TATGCTTTCCCTCCTTGGTCTCAATATTTTTTGACTTTTCTTTTTACAATGTTGGGAGTGAGCATTGGCAAACC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ACAGGCATCAAGAGCAAGTCACCAAAGGGCCTCACATACCACCCCCACCCCAGGGCCTCGCTTGTTCCTCTGCT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GAAATCACTGCCACGAGAGTCCTTGGACTCACTAACAAAGTCAGCCTTAAAGCAGAACTCACTCTAGTTCAGCC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CCAAAGCACCCAAAGGGATTAGCATGATGGCACACATATGAAACCCAGCACTCAGGGGGCTGGTCAGGAATTCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CCAAGGACAGTCTAGGCTGCACTAGACCCTACTAAAAAAAAAATCTGGCCCCCACTGGCTGCTCTGAAAAGCCA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCTTTGCATTGTTCCCGGGCCATGCTCCCGCTCACTACAGCCACCTTCACCGCCCACCGCCTCCAACACGGACT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CCAGCAGACAGCTTTCTCGCCTGAGTCCTCGAACTCAACTAATTCCTCACTCGAAGCATCGGACCACCCACGTG  1036

Query    1  -------ATGTCAGACGCAGCCGTAGACACCAGCTCCGAAATCACCACCAAGGACTTAAAGGAGAAGAAGGAAG  67
                   |||||||||...||.||.||||||||||||.|.||||.||||.|||||||.|||||||||||..|||
Sbjct 1037  CCCCACCATGTCAGACTGGGCAGTGGACACCAGCTCCAAGATCAGCACCGAGGACTTGAAGGAGAAGAAAAAAG  1110

Query   68  TTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTAATGAGGAAAATGGGGAGCAGGAG  141
            |||||||.|||||||..|||||||.||.|         ||          |||||.|||||||...||||||||
Sbjct 1111  TTGTGGAGGAGGCAGGGAATGGAACAGTC---------AA----------AATGAAGAAAATGTCAAGCAGGAG  1165

Query  142  GCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGAT-GGTG  214
            |||||||||||||||||.||||||||||||||||||||||||||||||||||||||.||||||||| || ||||
Sbjct 1166  GCTGACAATGAGGTAGATGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAGGAAGAAGGT-ATGGGTG  1238

Query  215  AGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGAT  288
            |||||||.|||||||||||||.|||||||||||||.|..||||.|||||||||..|||.||.|||||.||||||
Sbjct 1239  AGGAAGAAGATGGAGATGAAGGTGAGGAAGCTGAGGCTCCTACAGGCAAGCGGATAGCGGAGGATGAGGAGGAT  1312

Query  289  GACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGAC--------------------------------  330
            |||||||||||.||| ||||||||||||||||.|||||||||                                
Sbjct 1313  GACGATGTCGACACC-AGAAGCAGAAGACCGAAGAGGATGACTAGACAGCAAAAGGAAAAGTAACCTTACACAC  1385

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 1386  TGCACCGTGACCTAGTCACCTCCACTTCCCATCTCAGAACTTAAACGTGGTCAAGAAGCAGGCCCCGCCCACCC  1459

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 1460  GCCCTCAGCGGGGCGTGCCACCCACAAATGACATGCTCTCTCCACCACCCCACCAAAACTACAACATGAATTGG  1533

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 1534  CAACATGAGTGGCAAAAAGAAACCAGAACTTTCCAGGCCCTGCTTGTTTTCTTAAAAATACTTTAAAAGGAAAA  1607

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 1608  TTTGTTTGCATTTTTTATTTACATTTTATATTTTTGTACATATTGTTAGGGGTCTGCCATTTTTAAAGATAACA  1681

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 1682  GGTGAACAAACCAGCCTTCAGAGCATTTTCTGTCCTACTTCAGACTTCACGTGGGGTGTGACCATGTTCATTCA  1755

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 1756  AATCTCAAAGGAGAAAAAAAACTTGTAAAAAAAGCAAAAACAACAACAACAAAAAAAAAATCTTATTTTGACCA  1829

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 1830  TTCCAGTAACTTTTTTACGTATGTAACTAGCGTACTGTACTATAAGTAGTTGGTTTGTATGAGATGGTTAAAAA  1903

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 1904  GGCCAAAGATAAAAAGGTTTTTTTCTTTTTTTTTTTTTTTTTTGTCTATGAAGTTGCTGGGGGTTTTTTGTTGT  1977

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 1978  TGTTTTGGTTTTGGTTTTGGTTTGGCCTGTTTGATGTATGTGTGAAACAATGTCCAACAATAAACCAGAATTTT  2051

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 2052  ATTTTGCTGAGTTGTTCTAAAAAAAAATTCTGGGAGTATGTAGGCTATGTTCGGTGGATGTTGTTGGTGATTTA  2125

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 2126  TACGGAATTTTTCACTTAATTCTCCTACTTTCAGTGTTTTTTTTTCAGTGATTTATAAAGAATACATGTTCACT  2199

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 2200  TTTTGTCCCATCTACTGTGAGAATGAAGACAATTCTCAGACTGTCAACATTAAAATGTCAGCATCACTCTGAAG  2273

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 2274  GGGTTCACAATCAGTGTGAAGGGCCCCAGGGGGACACTGCAGAGGGACTTCAATCACATTGATATAGAGCTGAG  2347

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 2348  TCTCCTTGAAAACAAAGAGAGGCTCTGGGTTGACAAATGGTGGGGTAACAGAGGACCTGGCTGGCCACTGTCAG  2421

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 2422  AAGCATGTGCAGTCATGCTCAGAACTCGATCAAGGATGTCGCGCTGGGCTCTTGTCACAAGATGAGGTTTGTGT  2495

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 2496  AGGCTCACGTCCTCAGCAATGTCGTTATCCAGGAGAATGTTTCTGTGGTGGAAATCTGAAACTTCTTGGGTGAA  2569

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 2570  AAATCCATCCACAGGGTTCTGGTAAGGACAGGTGTTGCTTGTTCTGTCTCTCGAGCCCAGAGGAATGAATTGAT  2643

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 2644  CCTTGAAGGAGATGATATTGAACTTGTTTCAAATTCATTGGCTCTGATTCGGCAAGCCATACACTTAAAAACAA  2717

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 2718  GGATCTCAGAGTTTTAGGATGGCATCTACGTGTCTGAAAAGGGAACCATGAAGCAGGCTGACAAGTGAGACCCA  2791

Query  331  --------------------------------------------------------------------------  330
                                                                                      
Sbjct 2792  AGGACCTAGCTCCAGAAACAACATCCTGACTACAAGTATGAGTTGGGCTCTTTGGACAATAAAAGACTTATTAT  2865

Query  331  ----------------------  330
                                  
Sbjct 2866  ATATTGGGGGGGGGGGGGGAAA  2887

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