Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_01377
Subject:
NM_001243732.2
Aligned Length:
1429
Identities:
1182
Gaps:
200

Alignment

Query    1  ATGGCCACCAATAAGGAGCGACTCTTTGCGGCTGGTGCCCTGGGGCCTGGATCTGGCTA-CCCAGGGGCAGGTT  73
                                                              ||   |||| |||           
Sbjct    1  --------------------------------------------------AT---GCTAGCCC-----------  10

Query   74  TCCCCTTCGCCTTCCCAG--GGGCACTCAGGGGGTCTCCGCCTTTCGAG--------AT--GCTGAGCCCTAGC  135
            |||||.||.||  |||.|  ||      ||.|||.|.|||||....|||        ||  ||||         
Sbjct   11  TCCCCCTCCCC--CCCTGCTGG------AGCGGGGCGCCGCCGGGGGAGGAGGGGGAATCGGCTG---------  67

Query  136  TTCCGGGGCCTGGG-----CCAGCCTGACC-----TCCC--CAAG-------GAGATGGCCTCT----CTGTCG  186
               ||||.|||.||     |||||   |||     ||||  ||||       |.||||     |    ||||  
Sbjct   68  ---CGGGTCCTTGGTGTTTCCAGC---ACCCAGTTTCCCTTCAAGCCGGGTCGCGATG-----TACGACTGT--  128

Query  187  GTGGAGACACAG--AGCACCAGCTCAGAGGAG-----ATGGTGC--------------CCAGCTCGC----CCT  235
            .||||.||   |  .||.||.|.||.|.|..|     |.||.||              ||.|||.||    |..
Sbjct  129  ATGGAAAC---GTTTGCCCCGGGTCCGCGACGGCTGTACGGGGCGGCCGGGCCCGGGGCCGGCTTGCTGCGCAG  199

Query  236  CGCCCCCTCCGCCTCCT------CGGGTCTACAAGCCATGCTTCGTGTGCAATGACAAGTCCTCTGGCTACCAC  303
            .|||.||..||.|||||      |.||.||        ||..||.|.|||             |||||..|.||
Sbjct  200  AGCCACCGGCGGCTCCTGTTTCGCCGGACT--------TGAATCTTTTGC-------------CTGGCCGCAAC  252

Query  304  TATGGGGTCAGCTCTTGTGAAGGCTGCAAGGGCTTCTTTCGCCGAAGCATCCAGAAGAACATGGTGTACACGTG  377
                    |.||       .||.||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct  253  --------CCGC-------CAGCCTGCAATGGCTTCTTTCGCCGAAGCATCCAGAAGAACATGGTGTACACGTG  311

Query  378  TCACCGCGACAAAAACTGTATCATCAACAAGGTGACCAGGAATCGCTGCCAGTACTGCCGGCTACAGAAGTGCT  451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  312  TCACCGCGACAAAAACTGTATCATCAACAAGGTGACCAGGAATCGCTGCCAGTACTGCCGGCTACAGAAGTGCT  385

Query  452  TCGAAGTGGGCATGTCCAAGGAAGCTGTGCGAAATGACCGGAACAAGAAGAAGAAAGAGGTGAAGGAAGAAGGG  525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  386  TCGAAGTGGGCATGTCCAAGGAAGCTGTGCGAAATGACCGGAACAAGAAGAAGAAAGAGGTGAAGGAAGAAGGG  459

Query  526  TCACCTGACAGCTATGAGCTGAGCCCTCAGTTAGAAGAGCTCATCACCAAGGTCAGCAAAGCCCATCAGGAGAC  599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  460  TCACCTGACAGCTATGAGCTGAGCCCTCAGTTAGAAGAGCTCATCACCAAGGTCAGCAAAGCCCATCAGGAGAC  533

Query  600  TTTCCCCTCGCTCTGCCAGCTGGGCAAGTATACCACGAACTCCAGTGCAGACCACCGCGTGCAGCTGGATCTGG  673
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  534  TTTCCCCTCGCTCTGCCAGCTGGGCAAGTATACCACGAACTCCAGTGCAGACCACCGCGTGCAGCTGGATCTGG  607

Query  674  GGCTGTGGGACAAGTTCAGTGAGCTGGCTACCAAGTGCATCATCAAGATCGTGGAGTTTGCCAAGCGGTTGCCT  747
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  608  GGCTGTGGGACAAGTTCAGTGAGCTGGCTACCAAGTGCATCATCAAGATCGTGGAGTTTGCCAAGCGGTTGCCT  681

Query  748  GGCTTTACAGGGCTCAGCATTGCTGACCAGATCACTCTGCTCAAAGCTGCCTGCCTAGATATCCTGATGCTGCG  821
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  682  GGCTTTACAGGGCTCAGCATTGCTGACCAGATCACTCTGCTCAAAGCTGCCTGCCTAGATATCCTGATGCTGCG  755

Query  822  TATCTGCACAAGGTACACCCCAGAGCAGGACACCATGACCTTCTCCGACGGGCTGACCCTGAACCGGACCCAGA  895
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  756  TATCTGCACAAGGTACACCCCAGAGCAGGACACCATGACCTTCTCCGACGGGCTGACCCTGAACCGGACCCAGA  829

Query  896  TGCACAATGCCGGCTTCGGGCCCCTCACAGACCTTGTCTTTGCCTTTGCTGGGCAGCTCCTGCCCCTGGAGATG  969
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  830  TGCACAATGCCGGCTTCGGGCCCCTCACAGACCTTGTCTTTGCCTTTGCTGGGCAGCTCCTGCCCCTGGAGATG  903

Query  970  GATGACACCGAGACAGGGCTGCTCAGCGCCATCTGCCTCATCTGCGGAGACCGCATGGACCTGGAGGAGCCCGA  1043
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  904  GATGACACCGAGACAGGGCTGCTCAGCGCCATCTGCCTCATCTGCGGAGACCGCATGGACCTGGAGGAGCCCGA  977

Query 1044  AAAAGTGGACAAGCTGCAGGAGCCACTGCTGGAAGCCCTGAGGCTGTACGCCCGGCGCCGGCGGCCCAGCCAGC  1117
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  978  AAAAGTGGACAAGCTGCAGGAGCCACTGCTGGAAGCCCTGAGGCTGTACGCCCGGCGCCGGCGGCCCAGCCAGC  1051

Query 1118  CCTACATGTTCCCAAGGATGCTAATGAAAATCACCGACCTCCGGGGCATCAGCACTAAGGGAGCTGAAAGGGCC  1191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052  CCTACATGTTCCCAAGGATGCTAATGAAAATCACCGACCTCCGGGGCATCAGCACTAAGGGAGCTGAAAGGGCC  1125

Query 1192  ATTACTCTGAAGATGGAGATTCCAGGCCCGATGCCTCCCTTAATCCGAGAGATGCTGGAGAACCCTGAAATGTT  1265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126  ATTACTCTGAAGATGGAGATTCCAGGCCCGATGCCTCCCTTAATCCGAGAGATGCTGGAGAACCCTGAAATGTT  1199

Query 1266  TGAGGATGACTCCTCGCAGCCTGGTCCCCACCCCAATGCCTCTAGCGAGGATGAGGTTCCTGGGGGCCAGGGCA  1339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200  TGAGGATGACTCCTCGCAGCCTGGTCCCCACCCCAATGCCTCTAGCGAGGATGAGGTTCCTGGGGGCCAGGGCA  1273

Query 1340  AAGGGGGCCTGAAGTCCCCAGCC  1362
            |||||||||||||||||||||||
Sbjct 1274  AAGGGGGCCTGAAGTCCCCAGCC  1296

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