Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_01608
- Subject:
- XR_001748858.2
- Aligned Length:
- 4434
- Identities:
- 2345
- Gaps:
- 2086
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACCCGAGCTCATACTAGGGACGGGAAGTCGCGACCAGAGCCATTGGAGGGCGCGGGGACTGCAACCCTAATCAG 74
Query 1 -------ATGGCGCAGTGGGAAATGCTGCAGAATCTTGACAGCCCCTTTCAGGATCAGCTGCACCAGCTTTACT 67
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AGCCCAAATGGCGCAGTGGGAAATGCTGCAGAATCTTGACAGCCCCTTTCAGGATCAGCTGCACCAGCTTTACT 148
Query 68 CGCACAGCCTCCTGCCTGTGGACATTCGACAGTACTTGGCTGTCTGGATTGAAGACCAGAACTGGCAGGAAGCT 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CGCACAGCCTCCTGCCTGTGGACATTCGACAGTACTTGGCTGTCTGGATTGAAGACCAGAACTGGCAGGAAGCT 222
Query 142 GCACTTGGGAGTGATGATTCCAAGGCTACCATGCTATTCTTCCACTTCTTGGATCAGCTGAACTATGAGTGTGG 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GCACTTGGGAGTGATGATTCCAAGGCTACCATGCTATTCTTCCACTTCTTGGATCAGCTGAACTATGAGTGTGG 296
Query 216 CCGTTGCAGCCAGGACCCAGAGTCCTTGTTGCTGCAGCACAATTTGCGGAAATTCTGCCGGGACATTCAGCCCT 289
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CCGTTGCAGCCAGGACCCAGAGTCCTTGTTGCTGCAGCACAATTTGCGGAAATTCTGCCGGGACATT------- 363
Query 290 TTTCCCAGGATCCTACCCAGTTGGCTGAGATGATCTTTAACCTCCTTCTGGAAGAAAAAAGAATTTTGATCCAG 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 -----CAGGATCCTACCCAGTTGGCTGAGATGATCTTTAACCTCCTTCTGGAAGAAAAAAGAATTTTGATCCAG 432
Query 364 GCTCAGAGGGCCCAATTGGAACAAGGAGAGCCAGTTCTCGAAACACCTGTGGAGAGCCAGCAACATGAGATTGA 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 GCTCAGAGGGCCCAATTGGAACAAGGAGAGCCAGTTCTCGAAACACCTGTGGAGAGCCAGCAACATGAGATTGA 506
Query 438 ATCCCGGATCCTGGATTTAAGGGCTATGATGGAGAAGCTGGTAAAATCCATCAGCCAACTGAAAGACCAGCAGG 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 ATCCCGGATCCTGGATTTAAGGGCTATGATGGAGAAGCTGGTAAAATCCATCAGCCAACTGAAAGACCAGCAGG 580
Query 512 ATGTCTTCTGCTTCCGATATAAGATCCAGGCCAAAGGGAAGACACCCTCTCTGGACCCCCATCAGACCAAAGAG 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 ATGTCTTCTGCTTCCGATATAAGATCCAGGCCAAAGGGAAGACACCCTCTCTGGACCCCCATCAGACCAAAGAG 654
Query 586 CAGAAGATTCTGCAGGAAACTCTCAATGAACTGGACAAAAGGAGAAAGGAGGTGCTGGATGCCTCCAAAGCACT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CAGAAGATTCTGCAGGAAACTCTCAATGAACTGGACAAAAGGAGAAAGGAGGTGCTGGATGCCTCCAAAGCACT 728
Query 660 GCTAGGCCGATTAACTACCCTAATCGAGCTACTGCTGCCAAAGTTGGAGGAGTGGAAGGCCCAGCAGCAAAAAG 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 GCTAGGCCGATTAACTACCCTAATCGAGCTACTGCTGCCAAAGTTGGAGGAGTGGAAGGCCCAGCAGCAAAAAG 802
Query 734 CCTGCATCAGAGCTCCCATTGACCACGGGTTGGAACAGCTGGAGACATGGTTCACAGCTGGAGCAAAGCTGTTG 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 CCTGCATCAGAGCTCCCATTGACCACGGGTTGGAACAGCTGGAGACATGGTTCACAGCTGGAGCAAAGCTGTTG 876
Query 808 TTTCACCTGAGGCAGCTGCTGAAGGAGCTGAAGGGACTGAGTTGCCTGGTTAGCTATCAGGATGACCCTCTGAC 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 TTTCACCTGAGGCAGCTGCTGAAGGAGCTGAAGGGACTGAGTTGCCTGGTTAGCTATCAGGATGACCCTCTGAC 950
Query 882 CAAAGGGGTGGACCTACGCAACGCCCAGGTCACAGAGTTGCTACAGCGTCTGCTCCACAGAGCCTTTGTGGTAG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 CAAAGGGGTGGACCTACGCAACGCCCAGGTCACAGAGTTGCTACAGCGTCTGCTCCACAGAGCCTTTGTGGTAG 1024
Query 956 AAACCCAGCCCTGCATGCCCCAAACTCCCCATCGACCCCTCATCCTCAAGACTGGCAGCAAGTTCACCGTCCGA 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 AAACCCAGCCCTGCATGCCCCAAACTCCCCATCGACCCCTCATCCTCAAGACTGGCAGCAAGTTCACCGTCCGA 1098
Query 1030 ACAAGGCTGCTGGTGAGACTCCAGGAAGGCAATGAGTCACTGACTGTGGAAGTCTCCATTGACAGGAATCCTCC 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 ACAAGGCTGCTGGTGAGACTCCAGGAAGGCAATGAGTCACTGACTGTGGAAGTCTCCATTGACAGGAATCCTCC 1172
Query 1104 TCAATTACAAGGCTTCCGGAAGTTCAACATTCTGACTTCAAACCAGAAAACTTTGACCCCCGAGAAGGGGCAGA 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 TCAATTACAAGGCTTCCGGAAGTTCAACATTCTGACTTCAAACCAGAAAACTTTGACCCCCGAGAAGGGGCAGA 1246
Query 1178 GTCAGGGTTTGATTTGGGACTTTGGTTACCTGACTCTGGTGGAGCAACGTTCAGGTGGTTCAGGAAAGGGCAGC 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 GTCAGGGTTTGATTTGGGACTTTGGTTACCTGACTCTGGTGGAGCAACGTTCAGGTGGTTCAGGAAAGGGCAGC 1320
Query 1252 AATAAGGGGCCACTAGGTGTGACAGAGGAACTGCACATCATCAGCTTCACGGTCAAATATACCTACCAGGGTCT 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 AATAAGGGGCCACTAGGTGTGACAGAGGAACTGCACATCATCAGCTTCACGGTCAAATATACCTACCAGGGTCT 1394
Query 1326 GAAGCAGGAGCTGAAAACGGACACCCTCCCTGTGGTGATTATTTCCAACATGAACCAGCTCTCAATTGCCTGGG 1399
|||||||||||||||| ||| |||| ||
Sbjct 1395 GAAGCAGGAGCTGAAA---GAC-CCCT---------------------------------------------GG 1419
Query 1400 CTTCAGTTCTCTGGTTCAATTTGCTCAGCCCAAACCTTCAGAACCAGCAGTTCT-TCTCCAACCCCCCCAAGGC 1472
|||| .|||| ||| ||| |||
Sbjct 1420 CTTC------------------CCTCA----------TCA-----------TCTGTCT---------------- 1438
Query 1473 CCCCTGGAGCTTGCTGGGCCCTGCTCTCAGTTGGCAGTTCTCCTCCTATGTTGGCCGAGGCCTCAACTCAGACC 1546
.||| ||||
Sbjct 1439 ---GTGG--------------------------------------CTAT------------------------- 1446
Query 1547 AGCTGAGCATGCTGAGAAACAAGCTGTTC----GGGCAGAACTGTAGGACTGAGGATCCATTATTGTCCTGGGC 1616
||||.| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 -----------------------CTGTCCCACAGGGCAGAACTGTAGGACTGAGGATCCATTATTGTCCTGGGC 1497
Query 1617 TGACTTCACTAAGCGAGAGAGCCCTCCTGGCAAGTTACCATTCTGGACATGGCTGGACAAAATTCTGGAGTTGG 1690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TGACTTCACTAAGCGAGAGAGCCCTCCTGGCAAGTTACCATTCTGGACATGGCTGGACAAAATTCTGGAGTTGG 1571
Query 1691 TACATGACCACCTGAAGGATCTCTGGAATGATGGACGCATCATGGGCTTTGTGAGTCGGAGCCAGGAGCGCCGG 1764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 TACATGACCACCTGAAGGATCTCTGGAATGATGGACGCATCATGGGCTTTGTGAGTCGGAGCCAGGAGCGCCGG 1645
Query 1765 CTGCTGAAGAAGACCATGTCTGGCACCTTTCTACTGCGCTTCAGTGAATCGTCAGAAGGGGGCATTACCTGCTC 1838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1646 CTGCTGAAGAAGACCATGTCTGGCACCTTTCTACTGCGCTTCAGTGAATCGTCAGAAGGGGGCATTACCTGCTC 1719
Query 1839 CTGGGTGGAGCACCAGGATGATGACAAGGTGCTCATCTACTCTGTGCAACCGTACACGAAGGAGGTGCTGCAGT 1912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 CTGGGTGGAGCACCAGGATGATGACAAGGTGCTCATCTACTCTGTGCAACCGTACACGAAGGAGGTGCTGCAGT 1793
Query 1913 CACTCCCGCTGACTGAAATCATCCGCCATTACCAGTTGCTCACTGAGGAGAATATACCTGAAAACCCACTGCGC 1986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 CACTCCCGCTGACTGAAATCATCCGCCATTACCAGTTGCTCACTGAGGAGAATATACCTGAAAACCCACTGCGC 1867
Query 1987 TTCCTCTATCCCCGAATCCCCCGGGATGAAGCTTTTGGGTGCTACTACCAGGAGAAAGTTAATCTCCAGGAACG 2060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1868 TTCCTCTATCCCCGAATCCCCCGGGATGAAGCTTTTGGGTGCTACTACCAGGAGAAAGTTAATCTCCAGGAACG 1941
Query 2061 GAGGAAATACCTGAAACACAGGCTCATTGTGGTCTCTAATAGACAGGTGGATGAACTGCAACAACCGCTGGAGC 2134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1942 GAGGAAATACCTGAAACACAGGCTCATTGTGGTCTCTAATAGACAGGTGGATGAACTGCAACAACCGCTGGAGC 2015
Query 2135 TTAAGCCAGAGCCAGAGCTGGAGTCATTAGAGCTGGAACTAGGGCTGGTGCCAGAGCCAGAGCTCAGCCTGGAC 2208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2016 TTAAGCCAGAGCCAGAGCTGGAGTCATTAGAGCTGGAACTAGGGCTGGTGCCAGAGCCAGAGCTCAGCCTGGAC 2089
Query 2209 TTAGAGCCACTGCTGAAGGCAGGGCTGGATCTGGGGCCAGAGCTAGAGTCTGTGCTGGAGTCCACTCTGGAGCC 2282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2090 TTAGAGCCACTGCTGAAGGCAGGGCTGGATCTGGGGCCAGAGCTAGAGTCTGTGCTGGAGTCCACTCTGGAGCC 2163
Query 2283 TGTGATAGAGCCCACACTATGCATGGTATCACAAACAGTGCCAGAGCCAGACCAAGGACCTGTATCACAGCCAG 2356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2164 TGTGATAGAGCCCACACTATGCATGGTATCACAAACAGTGCCAGAGCCAGACCAAGGACCTGTATCACAGCCAG 2237
Query 2357 TGCCAGAGCCAGATTTGCCCTGTGATCTGAGACATTTGAACACTGAGCCAATGGAAATCTTCAGAAACTGTGTA 2430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2238 TGCCAGAGCCAGATTTGCCCTGTGATCTGAGACATTTGAACACTGAGCCAATGGAAATCTTCAGAAACTGTGTA 2311
Query 2431 AAGATTGAAGAAATCATGCCGAATGGTGACCCACTGTTGGCTGGCCAGAACACCGTGGATGAGGTTTACGTCTC 2504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2312 AAGATTGAAGAAATCATGCCGAATGGTGACCCACTGTTGGCTGGCCAGAACACCGTGGATGAGGTTTACGTCTC 2385
Query 2505 CCGCCCCAGCCACTTCTACACTGATGGACCCTTGATGCCTTCTGACTTC------------------------- 2553
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2386 CCGCCCCAGCCACTTCTACACTGATGGACCCTTGATGCCTTCTGACTTCTAGGAACCACATTTCCTCTGTTCTT 2459
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2460 TTCATATCTCTTGCCCTTCCTACTCCTCATAGCATGATATTGTTCTCCAAGGATGGGAATCAGGCATGTGTCCC 2533
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2534 TTCCAAGCTGTGTTAACTGTTCAAACTCAGGCCTGTGTGACTCCATTGGGGTGAGAGGTGAAAGCATAACATGG 2607
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2608 GTACAGAGGGGACAACAATGAATCAGAACAGATGCTGAGCCATAGGTCTAAATAGGATCCTGGAGGCTGCCTGC 2681
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2682 TGTGCTGGGAGGTATAGGGGTCCTGGGGGCAGGCCAGGGCAGTTGACAGGTACTTGGAGGGCTCAGGGCAGTGG 2755
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2756 CTTCTTTCCAGTATGGAAGGATTTCAACATTTTAATAGTTGGTTAGGCTAAACTGGTGCATACTGGCATTGGCC 2829
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2830 CTTGGTGGGGAGCACAGACACAGGATAGGACTCCATTTCTTTCTTCCATTCCTTCATGTCTAGGATAACTTGCT 2903
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2904 TTCTTCTTTCCTTTACTCCTGGCTCAAGCCCTGAATTTCTTCTTTTCCTGCAGGGGTTGAGAGCTTTCTGCCTT 2977
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 2978 AGCCTACCATGTGAAACTCTACCCTGAAGAAAGGGATGGATAGGAAGTAGACCTCTTTTTCTTACCAGTCTCCT 3051
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3052 CCCCTACTCTGCCCCTAAGCTGGCTGTACCTGTTCCTCCCCCATAAAATGATCCTGCCAATCTAATGTGAGTGT 3125
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3126 GAAGCTTTGCACACTAGTTTATGCTACCTAGTCTCCACTTTCTCAATGCTTAGGAGACAGATCACTCCTGGAGG 3199
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3200 CTGGGGATGGTAGGATTGCTGGGGATTTTTTTTTTTTTAAACAGGGTCTCACTCTGTTGCCCAGGCTAGAGTGC 3273
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3274 AATGGTGCAATCACAGCTCACTGCAGCCTCAACCTCCTGGGTTCAAGCAATCCTCCTACCTCAGCCTCCTGGGT 3347
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3348 AGCTAGCACCATGGCATGCGCCACCATGCCCTATTTTTTTTTTTTAAAGACAGGGTCTTGCTATATTGCCCAGG 3421
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3422 CTGGTCTTGAACTGGGCTCAAGTGATCCTCACGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCAC 3495
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3496 TGTGCTTGGCCAGGATTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCTCTCTTGTTGTCCAGGCTGGAGTGCAA 3569
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3570 TGGTGTGATCTCGGCTCACTGCAACCTCCGCCTTCCGGGTTCAAGTGACTCTCCTGCCTCAGCCTCCCCAGTAG 3643
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3644 CTGGGATTACAGATCTGCACCACCATGCCCAGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGTTG 3717
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3718 GTCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGTCCACCTCGGCCTCCCAGAGTGCTGGGATTACAGGC 3791
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3792 GTGAGCCACTGTTCCCAGCAGGAATTTCTTTTTTATAGTATTGGATAAAGTTTGGTGTTTTTACAGAGGAGAAG 3865
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3866 CAATGGGTCTTAGCTCTTTCTCTATTATGTTATCATCCTCCCTTTTTTGTACAATATGTTGTTTACCTGAAAGG 3939
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 3940 AAGGTTTCTATTCGTTGGTTGTGGACCTGGACAAAGTCCAAGTCTGTGGAACTTAAAACCTTGAAGGTCTGTCA 4013
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 4014 TAGGACTCTGGACAATCTCACACCTTAGCTATTCCCAGGGAACCCCAGGGGGCAACTGACATTGCTCCAAGATG 4087
Query 2554 -------------------------------------------------------------------------- 2553
Sbjct 4088 TTCTCCTGATGTAGCTTGAGATATAAAGGAAAGGCCCTGCACAGGTGGCTGTTTCTTGTCTGTTATGTCAGAGG 4161
Query 2554 -------------------------------------------------------------------- 2553
Sbjct 4162 AACAGTCCTGTTCAGAAAGGGGCTCTTCTGAGCAGAAATGGCTAATAAACTTTGTGCTGATCTGGAAA 4229
