Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_01978
Subject:
NM_003736.3
Aligned Length:
2770
Identities:
2405
Gaps:
362

Alignment

Query    1  ATGGGGAGCGGCGCCGGGGAGCTGGGCCGGGCTGAGAGGCTGCCAGTGCTCTTTCTCTTCCTGCTGTCTTTGTT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGGGAGCGGCGCCGGGGAGCTGGGCCGGGCTGAGAGGCTGCCAGTGCTCTTTCTCTTCCTGCTGTCTTTGTT  74

Query   75  CTGCCCGGCGCTCTGTGAGCAGATCCGCTACAGGATTCCCGAGGAAATGCCCAAGGGCTCCGTAGTGGGGAACC  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CTGCCCGGCGCTCTGTGAGCAGATCCGCTACAGGATTCCCGAGGAAATGCCCAAGGGCTCCGTAGTGGGGAACC  148

Query  149  TCGCCACGGACCTGGGGTTCAGCGTCCAGGAGTTACCGACTCGAAAACTGCGCGTCAGTTCGGAGAAGCCTTAC  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TCGCCACGGACCTGGGGTTCAGCGTCCAGGAGTTACCGACTCGAAAACTGCGCGTCAGTTCGGAGAAGCCTTAC  222

Query  223  TTCACCGTGAGCGCAGAGAGCGGGGAGTTGCTTGTGAGCAGCAGGCTAGACAGGGAGGAGATATGCGGGAAGAA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TTCACCGTGAGCGCAGAGAGCGGGGAGTTGCTTGTGAGCAGCAGGCTAGACAGGGAGGAGATATGCGGGAAGAA  296

Query  297  GCCAGCTTGTGCTCTGGAATTTGAGGCTGTTGCTGAAAATCCACTGAACTTTTATCACGTGAATGTGGAGATCG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GCCAGCTTGTGCTCTGGAATTTGAGGCTGTTGCTGAAAATCCACTGAACTTTTATCACGTGAATGTGGAGATCG  370

Query  371  AGGACATTAATGACCACACGCCAAAATTCACGCAAAATTCCTTTGAGCTGCAAATAAGTGAGTCTGCACAGCCT  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGGACATTAATGACCACACGCCAAAATTCACGCAAAATTCCTTTGAGCTGCAAATAAGTGAGTCTGCACAGCCT  444

Query  445  GGCACACGATTTATATTAGGATCTGCCCATGATGCGGATATTGGTAGCAACACACTGCAGAATTACCAACTCAG  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GGCACACGATTTATATTAGGATCTGCCCATGATGCGGATATTGGTAGCAACACACTGCAGAATTACCAACTCAG  518

Query  519  TCCCAGTGATCATTTCTCACTGATAAATAAAGAGAAATCAGATGGCAGTAAATACCCTGAGATGGTATTGAAGA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TCCCAGTGATCATTTCTCACTGATAAATAAAGAGAAATCAGATGGCAGTAAATACCCTGAGATGGTATTGAAGA  592

Query  593  CACCTTTGGACAGAGAAAAGCAGAAATCCTACCACTTGACTTTGACTGCCTTGGACTTTGGAGCTCCACCCCTA  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CACCTTTGGACAGAGAAAAGCAGAAATCCTACCACTTGACTTTGACTGCCTTGGACTTTGGAGCTCCACCCCTA  666

Query  667  AGCAGCACTGCACAGATACACGTTCTAGTGACTGATGCCAATGATAATGCTCCAGTGTTCAGTCAAGACGTATA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGCAGCACTGCACAGATACACGTTCTAGTGACTGATGCCAATGATAATGCTCCAGTGTTCAGTCAAGACGTATA  740

Query  741  CAGGGTGAGCCTTTCAGAAAACGTGTACCCGGGGACCACGGTGCTACAGGTGACTGCCACGGACCAGGATGAGG  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CAGGGTGAGCCTTTCAGAAAACGTGTACCCGGGGACCACGGTGCTACAGGTGACTGCCACGGACCAGGATGAGG  814

Query  815  GTGTCAATGCCGAGATTACTTTCTCTTTCAGTGAAGCTAGCCAGATCACCCAATTTGACCTGAACTCTAACACC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GTGTCAATGCCGAGATTACTTTCTCTTTCAGTGAAGCTAGCCAGATCACCCAATTTGACCTGAACTCTAACACC  888

Query  889  GGGGAAATTACTGTTTTAAATACATTAGATTTTGAAGAAGTCAAAGAATATTCCATAGTTTTGGAAGCAAGGGA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GGGGAAATTACTGTTTTAAATACATTAGATTTTGAAGAAGTCAAAGAATATTCCATAGTTTTGGAAGCAAGGGA  962

Query  963  CGGTGGAGGAATGATTGCGCAATGCACAGTGGAGGTAGAAGTCATAGATGAAAATGACAACGCCCCAGAAGTGA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CGGTGGAGGAATGATTGCGCAATGCACAGTGGAGGTAGAAGTCATAGATGAAAATGACAACGCCCCAGAAGTGA  1036

Query 1037  TATTCCAGTCTCTACCCAACCTAATTATGGAGGACGCCGAGCTGGGAACACATATTGCTTTGCTCAAAGTCCGT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TATTCCAGTCTCTACCCAACCTAATTATGGAGGACGCCGAGCTGGGAACACATATTGCTTTGCTCAAAGTCCGT  1110

Query 1111  GACAAGGATTCCAGACACAATGGAGAAGTGACTTGTAAATTGGAAGGTGATGTTCCATTTAAAATATTAACTTC  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GACAAGGATTCCAGACACAATGGAGAAGTGACTTGTAAATTGGAAGGTGATGTTCCATTTAAAATATTAACTTC  1184

Query 1185  TTCAAGAAACACGTATAAATTAGTGACAGATGCTGTTCTAGACCGCGAGCAGAATCCAGAGTACAATATAACCG  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TTCAAGAAACACGTATAAATTAGTGACAGATGCTGTTCTAGACCGCGAGCAGAATCCAGAGTACAATATAACCG  1258

Query 1259  TTACGGCAACAGATCGGGGCAAGCCTCCCCTCTCCTCCAGTTCCAGCATCACCCTGCACATTGGTGATGTAAAT  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TTACGGCAACAGATCGGGGCAAGCCTCCCCTCTCCTCCAGTTCCAGCATCACCCTGCACATTGGTGATGTAAAT  1332

Query 1333  GACAACGCTCCGGTTTTCTCACAGTCTTCCTATATAGTCCACGTGGCCGAGAACAACCCGCCTGGAGCCTCTAT  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GACAACGCTCCGGTTTTCTCACAGTCTTCCTATATAGTCCACGTGGCCGAGAACAACCCGCCTGGAGCCTCTAT  1406

Query 1407  TTCACAAGTCAGGGCTTCTGATCCGGACTTGGGGCCCAACGGCCAAGTCTCTTACTGCATCATGGCCAGTGACC  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TTCACAAGTCAGGGCTTCTGATCCGGACTTGGGGCCCAACGGCCAAGTCTCTTACTGCATCATGGCCAGTGACC  1480

Query 1481  TGGAGCAGCGGGAGCTGTCATCCTACGTGTCCATAAGCGCGGAGAGCGGGGTGGTGTTCGCGCAGCGCGCCTTC  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TGGAGCAGCGGGAGCTGTCATCCTACGTGTCCATAAGCGCGGAGAGCGGGGTGGTGTTCGCGCAGCGCGCCTTC  1554

Query 1555  GACCACGAGCAGCTGCGCGCCTTCGAACTCACACTGCAGGCCCGCGACCAGGGCTCGCCAGCGCTCAGCGCGAA  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GACCACGAGCAGCTGCGCGCCTTCGAACTCACACTGCAGGCCCGCGACCAGGGCTCGCCAGCGCTCAGCGCGAA  1628

Query 1629  CGTGAGCCTGCGCGTGTTAGTGGACGACCGCAACGACAATGCGCCACGGGTGCTGTACCCCGCGCTGGGTCCCG  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  CGTGAGCCTGCGCGTGTTAGTGGACGACCGCAACGACAATGCGCCACGGGTGCTGTACCCCGCGCTGGGTCCCG  1702

Query 1703  ACGGCTCTGCGCTCTTCGATATGGTGCCGCACGCTGCAGAGCCTGGCTACTTGGTGACCAAGGTAGTGGCGGTG  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  ACGGCTCTGCGCTCTTCGATATGGTGCCGCACGCTGCAGAGCCTGGCTACTTGGTGACCAAGGTAGTGGCGGTG  1776

Query 1777  GACGCAGACTCAGGACACAACGCCTGGCTGTCCTACCACGTGCTGCAGGCTAGCGAGCCCGGGCTCTTCAGCCT  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GACGCAGACTCAGGACACAACGCCTGGCTGTCCTACCACGTGCTGCAGGCTAGCGAGCCCGGGCTCTTCAGCCT  1850

Query 1851  GGGGCTGCGCACGGGCGAAGTGCGCACAGCGCGTGCCTTAGGCGACAGGGACGCCGTCCGCCAGCGCCTTCTGG  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GGGGCTGCGCACGGGCGAAGTGCGCACAGCGCGTGCCTTAGGCGACAGGGACGCCGTCCGCCAGCGCCTTCTGG  1924

Query 1925  TCGCCGTGCGTGACGGTGGACAGCCACCACTCTCGGCCACTGCCACGTTGCACCTGGTCTTCGCCGACAGCTTG  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  TCGCCGTGCGTGACGGTGGACAGCCACCACTCTCGGCCACTGCCACGTTGCACCTGGTCTTCGCCGACAGCTTG  1998

Query 1999  CAGGAGGTGCTGCCGGATATCACTGACCGCCCCGACCCCTCTGACCTCCAGGCTGAGCTGCAGTTTTACCTAGT  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  CAGGAGGTGCTGCCGGATATCACTGACCGCCCCGACCCCTCTGACCTCCAGGCTGAGCTGCAGTTTTACCTAGT  2072

Query 2073  GGTGGCCTTGGCCTTGATCTCAGTGCTCTTCCTCGTGGCCATGATTCTGGCCATTGCCTTGCGCCTGCGACGCT  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  GGTGGCCTTGGCCTTGATCTCAGTGCTCTTCCTCGTGGCCATGATTCTGGCCATTGCCTTGCGCCTGCGACGCT  2146

Query 2147  CCTCCAGCCCCGCCTCCTGGAGCTGCTTCCAGCCTGGTCTCTGTGTTAAATCCGAATCCGTGGTTCCCCCCAAC  2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  CCTCCAGCCCCGCCTCCTGGAGCTGCTTCCAGCCTGGTCTCTGTGTTAAATCCGAATCCGTGGTTCCCCCCAAC  2220

Query 2221  TACAGCGAGGGGACTTTGCCTTATTCCTACAATCTATGTGTTGCACATACAGGAAAGACGGAGTTTAATTTCCT  2294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  TACAGCGAGGGGACTTTGCCTTATTCCTACAATCTATGTGTTGCACATACAGGAAAGACGGAGTTTAATTTCCT  2294

Query 2295  AAAATGTAGTGAGCAGTTGAGTTCAGGACAAGACATACTTTGCGGTGATTCATCTGGGGCCTTATTTCCACTTT  2368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  AAAATGTAGTGAGCAGTTGAGTTCAGGACAAGACATACTTTGCGGTGATTCATCTGGGGCCTTATTTCCACTTT  2368

Query 2369  GTAATTCCAGTGAATTGACTTCCCATCAG----------------------GTGAGTTTCCTT-----------  2409
            |||||||||||||||||||||||||||||                      | |.|||||..|           
Sbjct 2369  GTAATTCCAGTGAATTGACTTCCCATCAGCAAGCCCCGCCCAACACGGACTG-GCGTTTCTCTCAGGCCCAGAG  2441

Query 2410  --------------------------------------------------------------------------  2409
                                                                                      
Sbjct 2442  ACCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAACAACCAGTTTGACACAGAGATGC  2515

Query 2410  --------------------------------------------------------------------------  2409
                                                                                      
Sbjct 2516  TGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCTCCACCCTGGGAGGGGGTGCCGGCACC  2589

Query 2410  --------------------------------------------------------------------------  2409
                                                                                      
Sbjct 2590  ATGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCACGTGCCCGACTACCGCCAGAATGTCTACAT  2663

Query 2410  --------------------------------------------------------------------------  2409
                                                                                      
Sbjct 2664  CCCAGGCAGCAATGCCACACTGACCAACGCAGCTGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCA  2737

Query 2410  --------------------------------  2409
                                            
Sbjct 2738  ACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAG  2769

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