Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_01978
Subject:
NM_032099.1
Aligned Length:
2491
Identities:
2058
Gaps:
119

Alignment

Query    1  ATGGGGAGCGGCGCCGGGGAGCTGGGCCGGGCTGAGAGGCTGCCAGTGCTCTTTCTCTTCCTGCTGTCTTTGTT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGGGAGCGGCGCCGGGGAGCTGGGCCGGGCTGAGAGGCTGCCAGTGCTCTTTCTCTTCCTGCTGTCTTTGTT  74

Query   75  CTGCCCGGCGCTCTGTGAGCAGATCCGCTACAGGATTCCCGAGGAAATGCCCAAGGGCTCCGTAGTGGGGAACC  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CTGCCCGGCGCTCTGTGAGCAGATCCGCTACAGGATTCCCGAGGAAATGCCCAAGGGCTCCGTAGTGGGGAACC  148

Query  149  TCGCCACGGACCTGGGGTTCAGCGTCCAGGAGTTACCGACTCGAAAACTGCGCGTCAGTTCGGAGAAGCCTTAC  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TCGCCACGGACCTGGGGTTCAGCGTCCAGGAGTTACCGACTCGAAAACTGCGCGTCAGTTCGGAGAAGCCTTAC  222

Query  223  TTCACCGTGAGCGCAGAGAGCGGGGAGTTGCTTGTGAGCAGCAGGCTAGACAGGGAGGAGATATGCGGGAAGAA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TTCACCGTGAGCGCAGAGAGCGGGGAGTTGCTTGTGAGCAGCAGGCTAGACAGGGAGGAGATATGCGGGAAGAA  296

Query  297  GCCAGCTTGTGCTCTGGAATTTGAGGCTGTTGCTGAAAATCCACTGAACTTTTATCACGTGAATGTGGAGATCG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GCCAGCTTGTGCTCTGGAATTTGAGGCTGTTGCTGAAAATCCACTGAACTTTTATCACGTGAATGTGGAGATCG  370

Query  371  AGGACATTAATGACCACACGCCAAAATTCACGCAAAATTCCTTTGAGCTGCAAATAAGTGAGTCTGCACAGCCT  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGGACATTAATGACCACACGCCAAAATTCACGCAAAATTCCTTTGAGCTGCAAATAAGTGAGTCTGCACAGCCT  444

Query  445  GGCACACGATTTATATTAGGATCTGCCCATGATGCGGATATTGG--TAGCAACACACTGCAGAATTACCAACTC  516
            ||||||.||||||||.|||.|...||..|.|||||.||||||||  ||  |||.|.||||||||.||..|||||
Sbjct  445  GGCACAAGATTTATACTAGAAGTAGCAGAAGATGCAGATATTGGCTTA--AACTCTCTGCAGAAGTATAAACTC  516

Query  517  ------AGTCCCAGTGATCATTTCTCACTGATAAATAAAGAGAAATCA-GATGGCAGTAAATACCCTGAGATGG  583
                  |..||.||      |||||||.|.||||.|||.|||||| || |||||.|||||||||||.||..|||
Sbjct  517  TCTCTTAACCCAAG------TTTCTCATTAATAATTAAGGAGAAA-CAGGATGGTAGTAAATACCCGGAACTGG  583

Query  584  TATTGAAGACACCTTTGGACAGAGAAAAGCAGAAATCCTACCA--CTTGACT-TTGACTGCCTTGGACTTTGGA  654
            .|.||.|||.|.|.||.|||.|.|||.|.||||   ..|||||  .||.|.| .||||||||||||||..||||
Sbjct  584  CACTGGAGAAAACCTTAGACCGGGAACAACAGA---GTTACCATCGTTTAGTCCTGACTGCCTTGGACGGTGGA  654

Query  655  GCTCCACCCCTAAGCAGCACTGCAC--AGATACACGTTCTA-GTGACTGATGCCAATGATAATGCTCCAGTGTT  725
            ..|||||||||||||.||||  |||  ||.| |..|.||.| ||.||.||.||||||||||||.|.||.||.||
Sbjct  655  CATCCACCCCTAAGCGGCAC--CACTGAGCT-CCGGATCCAGGTAACCGACGCCAATGATAATCCCCCGGTATT  725

Query  726  CAGTCAAGACGTATACAGGGTGAGCCTTTCAGAAAACGTGTACCCGGGGACCACGGTGCTACAGGTGACTGCCA  799
            ||..|.||||||.|||||.||.||||||...|||||||||...||.||.|||||.|||.|.||.|||.|.||||
Sbjct  726  CAACCGAGACGTGTACAGAGTCAGCCTTCGGGAAAACGTGCCACCAGGCACCACTGTGTTGCAAGTGTCAGCCA  799

Query  800  CGGACCAGGATGAGGGTGTCAATGCCGAGATTACTTTCTCTTTCAGTGAAGCTAGCCAGATCACC---CAA---  867
            |.|||||.||.|||||..||||..|.||.|||||||..||.||        |||  ||||  |||   |||   
Sbjct  800  CTGACCAAGACGAGGGCATCAACTCAGAAATTACTTATTCCTT--------CTA--CAGA--ACCGGGCAAATC  861

Query  868  TTTGACCTGAACTCTAACACCGGGGAAATTACTGTTTTAAATACATTAGATTTTGAAGAAGTCAAAGAATATTC  941
            |||...|||||.||.||.|.|||.||||||||...|..|||.|.|.|.|||||||||||...|||.||||||||
Sbjct  862  TTTAGTCTGAATTCAAAGAGCGGAGAAATTACCACTCAAAAGAAACTGGATTTTGAAGAGACCAAGGAATATTC  935

Query  942  CATAGTTTTGGAAGCAAGGGACGGTGGAGGAATGATTGCGCAATGCACAGTGGAGGTAGAAGTCAT-----AGA  1010
            .||.|||.|.||||..|||||.|||||.|||.||.||||.|||||.|||||.||     ||.|.||     |||
Sbjct  936  AATGGTTGTAGAAGGGAGGGATGGTGGTGGACTGGTTGCACAATGTACAGTTGA-----AATTAATATTCAAGA  1004

Query 1011  TGAAAATGACAACGCCCCAGAAGTGATATTCCAGTCTCTACCCAACCTAATTATGGAGGACGCCGAGCTGGGAA  1084
            ||||||||||||...|||||||||.|.||||||.|||||||...|..|.|||.||||..||||.|.||..||||
Sbjct 1005  TGAAAATGACAATAGCCCAGAAGTTACATTCCATTCTCTACTTGAAATGATTCTGGAAAACGCGGTGCCTGGAA  1078

Query 1085  CACATATTGCTTTGCTCAAAGTCCGTGACAAGGATTCCAGACACAATGGAGAAGTGACTTGTAAATTGGAAGGT  1158
            |||..|||||||||.|||||.|.|.||||.|.|||||..|..|.|||||.||.||.|.||||.||||..||||.
Sbjct 1079  CACTAATTGCTTTGATCAAAATACATGACCAAGATTCTGGGGAAAATGGGGAGGTTAATTGTCAATTACAAGGC  1152

Query 1159  GATGTTCCATTTAAAATATTAACTTCTTCAAGAAACACGTATAAATTAGTGACAGATG----CTGTTCTAGACC  1228
            ||.||.||.|||||.||..|..||||.||.|.|||..|||||||.||.||.|||||||    |    |||||||
Sbjct 1153  GAAGTCCCTTTTAAGATTATCTCTTCATCCAAAAATTCGTATAAGTTGGTAACAGATGGAACC----CTAGACC  1222

Query 1229  GCGAGCAGAATCCAGAGTACAATATAACCGTTACGGCAACAGATCGGGGCAAGCCTCCCCTCTCCTCCAGTTCC  1302
            |.|||||.|..||.|||||||||.|.|||.|.||.||.|||||..||||||||||.||||||||||||||....
Sbjct 1223  GAGAGCAAACCCCGGAGTACAATGTCACCATCACAGCCACAGACAGGGGCAAGCCGCCCCTCTCCTCCAGCATA  1296

Query 1303  AGCATCACCCTGCACATTGGTGATGTAAATGACAACGCTCCGGTTTTCTCA-CAGTCTTCCTATATAGTCCACG  1375
            |||.|||.|||.||.||..|.||.||.||.||.||||||||||||||| || |||.|.|||||..|||||...|
Sbjct 1297  AGCGTCATCCTACATATCAGAGACGTCAACGATAACGCTCCGGTTTTC-CACCAGGCGTCCTACTTAGTCAGTG  1369

Query 1376  TGGCCGAGAACAACCCGCCTGGAGCCTCTATTTCACAAGTCAGGGCTTCTGATCCGGACTTGGGGCCCAACGGC  1449
            |..||||.||||||||.|||||.|||||.||..|.||||||.|.||.||.||.|.||||||||||...||||||
Sbjct 1370  TACCCGAAAACAACCCTCCTGGGGCCTCCATCGCGCAAGTCTGCGCCTCGGACCTGGACTTGGGGTTGAACGGC  1443

Query 1450  CAAGTCTCTTACTGCATCATGGCCAGTGACCTGGAGCAGCGGGAGCTGTCATCCTACGTGTCCATAAGCGCGGA  1523
            ||||||||.||||..|||||||||||.|||||.||||..|.||..|||.|.||.|||||||||||.||||||.|
Sbjct 1444  CAAGTCTCCTACTCTATCATGGCCAGCGACCTAGAGCCTCTGGCACTGGCCTCTTACGTGTCCATGAGCGCGCA  1517

Query 1524  GAGCGGGGTGGTGTTCGCGCAGCGCGCCTTCGACCACGAGCAGCTGCGCGCCTTCGAACTCACACTGCAGGCCC  1597
            .||.||||||||||||||||||||||||||.|||.||||||||||||||.||||||||||||||||.|||||||
Sbjct 1518  AAGTGGGGTGGTGTTCGCGCAGCGCGCCTTTGACTACGAGCAGCTGCGCACCTTCGAACTCACACTACAGGCCC  1591

Query 1598  GCGACCAGGGCTCGCCAGCGCTCAGCGCGAACGTGAGCCTGCGCGTGTTAGTGGACGACCGCAACGACAATGCG  1671
            ||||||||||||||||.|||||||||||.||||||||||||||||||||.||||.||||||.||||||||.||.
Sbjct 1592  GCGACCAGGGCTCGCCTGCGCTCAGCGCAAACGTGAGCCTGCGCGTGTTGGTGGGCGACCGAAACGACAACGCA  1665

Query 1672  CCACGGGTGCTGTACCCCGCGCTGGGTCCCGACGGCTCTGCGCTCTTCGATATGGTGCCGCACGCTGCAGAGCC  1745
            ||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct 1666  CCGCGGGTGCTGTACCCCGCGCTGGGTCCCGACGGCTCTGCGCTCTTCGATATGGTGCCGCGCGCTGCAGAGCC  1739

Query 1746  TGGCTACTTGGTGACCAAGGTAGTGGCGGTGGACGCAGACTCAGGACACAACGCCTGGCTGTCCTACCACGTGC  1819
            .||||||.|||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740  CGGCTACCTGGTGACCAAGGTAGTGGCCGTGGACGCAGACTCAGGACACAACGCCTGGCTGTCCTACCACGTGC  1813

Query 1820  TGCAGGCTAGCGAGCCCGGGCTCTTCAGCCTGGGGCTGCGCACGGGCGAAGTGCGCACAGCGCGTGCCTTAGGC  1893
            |||||||||||||||||||||||||||||||||||||||||||.||.||.||||||||||||||||||||.|||
Sbjct 1814  TGCAGGCTAGCGAGCCCGGGCTCTTCAGCCTGGGGCTGCGCACAGGAGAGGTGCGCACAGCGCGTGCCTTGGGC  1887

Query 1894  GACAGGGACGCCGTCCGCCAGCGCCTTCTGGTCGCCGTGCGTGACGGTGGACAGCCACCACTCTCGGCCACTGC  1967
            |||||||||||.|.||||||||||||.|||||.||.||||||||.|||||||||||.||||||||.|||||.||
Sbjct 1888  GACAGGGACGCGGCCCGCCAGCGCCTGCTGGTTGCTGTGCGTGATGGTGGACAGCCGCCACTCTCCGCCACCGC  1961

Query 1968  CACGTTGCACCTGGTCTTCGCCGACAGCTTGCAGGAGGTGCTGCCGGATATCACTGACCGCCCCGACCCCTCTG  2041
            ||||.|||||.|||||||.||.|||||||||||||||||||||||||||||||||||||||||.|..|||||||
Sbjct 1962  CACGCTGCACTTGGTCTTTGCTGACAGCTTGCAGGAGGTGCTGCCGGATATCACTGACCGCCCTGTACCCTCTG  2035

Query 2042  ACCTCCAGGCTGAGCTGCAGTTTTACCTAGTGGTGGCCTTGGCCTTGATCTCAGTGCTCTTCCTCGTGGCCATG  2115
            |||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.||
Sbjct 2036  ACCCCCAGGCTGAGCTGCAGTTTTACCTAGTGGTGGCCTTGGCCTTGATCTCAGTGCTCTTCCTCCTGGCCGTG  2109

Query 2116  ATTCTGGCCATTGCCTTGCGCCTGCGACGCTCCTCCAGCCCCGCCTCCTGGAGCTGCTTCCAGCCTGGTCTCTG  2189
            |||||||||.|||||||||||||||||||||||||||||||.|||.||||||||||||||||.|||||||||||
Sbjct 2110  ATTCTGGCCGTTGCCTTGCGCCTGCGACGCTCCTCCAGCCCTGCCGCCTGGAGCTGCTTCCAACCTGGTCTCTG  2183

Query 2190  TGTTAAATCCGAATCCGTGGTTCCCCCCAACTACAGCGAGGGGACTTTGCCTTATTCCTACAATCTATGTGTTG  2263
            |||.||.||.|.|.|.||||||||||||||||||||..|||||||||||||||||||||||||.||||||||||
Sbjct 2184  TGTCAAGTCTGGACCTGTGGTTCCCCCCAACTACAGTCAGGGGACTTTGCCTTATTCCTACAACCTATGTGTTG  2257

Query 2264  CACATACAGGAAAGACGGAGTTTAATTTCCTAAAATGTAGTGAGCAGTTGAGTTCAGGACAAGACATACTTTGC  2337
            ||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||.
Sbjct 2258  CACATACAGGAAAGACGGAGTTTAATTTCCTAAAATGTAGTGAGCAATTGAGTTCAGGACAAGACATACTTTGT  2331

Query 2338  GGTGATTCATCTGGGGCCTTATTTCCACTTTGTAATTCCAGTGAATTGACTTCCCATC------AGGTGAGTTT  2405
            |||||||||||||||||||||||||||||||||||||||||.||.|.|||||||||||      .|||||||||
Sbjct 2332  GGTGATTCATCTGGGGCCTTATTTCCACTTTGTAATTCCAGCGAGTCGACTTCCCATCCTGAGTTGGTGAGTTT  2405

Query 2406  CCTT---------------------------------------------  2409
            |.||                                             
Sbjct 2406  CATTTATGTCTATTCTTTTTCATTACCCACCCAATTTTCTGTATTTACA  2454

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.