Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02088
Subject:
NR_146766.1
Aligned Length:
2549
Identities:
2049
Gaps:
500

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACGTGTTGGGAGACAGCGGCGTGGCGGCGGCGGTGGCGGTAGCGACGGCACGCCGTAGGGCGGTCAGAAGGTTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCGGTTCCGGTGTAACGTTCGGGCTCCGTCTCAGGGGCTGAAGTTTGTGAGGTGTAGTATTGAGTCCTGTTTGA  148

Query    1  -------------------------ATGGCACTGTCAAAGAGGGAGCTGGATGAGCTGAAACCATGGATAGAGA  49
                                     |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GCTATTGTTCTCTTTTTCCTGAAAAATGGCACTGTCAAAGAGGGAGCTGGATGAGCTGAAACCATGGATAGAGA  222

Query   50  AGACAGTGAAGAGGGTCCTGGGTTTCTCAGAGCCTACGGTGGTCACAGCAGCATTGAACTGTGTGGGGAAGGGC  123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AGACAGTGAAGAGGGTCCTGGGTTTCTCAGAGCCTACGGTGGTCACAGCAGCATTGAACTGTGTGGGGAAGGGC  296

Query  124  ATGGACAAGAAGAAGGCAGCCGATCATCTGAAACCTTTTCTTGATGATTCTACTCTCCGATTTGTGGACAAACT  197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ATGGACAAGAAGAAGGCAGCCGATCATCTGAAACCTTTTCTTGATGATTCTACTCTCCGATTTGTGGACAAACT  370

Query  198  GTTTGAGGCTGTGGAGGAAGGCCGAAGCTCTAGGCATTCCAAGTCTAGCAGTGACAGGAGCAGAAAACGAGAGC  271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GTTTGAGGCTGTGGAGGAAGGCCGAAGCTCTAGGCATTCCAAGTCTAGCAGTGACAGGAGCAGAAAACGAGAGC  444

Query  272  TAAAGGAGGTGTTTGGTGATGACTCTGAGATCTCTAAAGAATCATCAGGAGTAAAGAAGCGACGAATACCCCGT  345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TAAAGGAGGTGTTTGGTGATGACTCTGAGATCTCTAAAGAATCATCAGGAGTAAAGAAGCGACGAATACCCCGT  518

Query  346  TTTGAGGAGGTGGAAGAAGAGCCAGAGGTGATCCCTGGGCCTCCATCAGAGAGCCCTGGCATGCTGACTAAGCT  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TTTGAGGAGGTGGAAGAAGAGCCAGAGGTGATCCCTGGGCCTCCATCAGAGAGCCCTGGCATGCTGACTAAGCT  592

Query  420  CCAGATCAAACAGATGATGGAGGCAGCAACACGACAAATCGAGGAGAGGAAAAAACAGCTGAGCTTCATTAGCC  493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CCAGATCAAACAGATGATGGAGGCAGCAACACGACAAATCGAGGAGAGGAAAAAACAGCTGAGCTTCATTAGCC  666

Query  494  CCCCTACACCTCAGCCAAAGACTCCTTCTTCCTCCCAACCAGAACGACTTCCTATTGGCAACACTATTCAGCCC  567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CCCCTACACCTCAGCCAAAGACTCCTTCTTCCTCCCAACCAGAACGACTTCCTATTGGCAACACTATTCAGCCC  740

Query  568  TCCCAGGCTGCCACTTTCATGAATGATGCCATTGAGAAGGCAAGGAAAGCAGCTGAACTGCAAGCTCGAATCCA  641
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TCCCAGGCTGCCACTTTCATGAATGATGCCATTGAGAAGGCAAGGAAAGCAGCTGAACTGCAAGCTCGAATCCA  814

Query  642  AGCCCAGCTGGCACTGAAGCCAGGACTCATCGGCAATGCCAACATGGTGGGCCTGGCTAATCTCCATGCCATGG  715
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AGCCCAGCTGGCACTGAAGCCAGGACTCATCGGCAATGCCAACATGGTGGGCCTGGCTAATCTCCATGCCATGG  888

Query  716  GCATTGCTCCCCCGAAGGTGGAGTTAAAAGACCAAACGAAACCTACACCACTGATCCTGGATGAGCAAGGGCGC  789
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GCATTGCTCCCCCGAAGGTGGAGTTAAAAGACCAAACGAAACCTACACCACTGATCCTGGATGAGCAAGGGCGC  962

Query  790  ACTGTAGATGCAACAGGCAAGGAGATTGAGCTGACACACCGCATGCCTACTCTGAAAGCCAATATTCGTGCTGT  863
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  ACTGTAGATGCAACAGGCAAGGAGATTGAGCTGACACACCGCATGCCTACTCTGAAAGCCAATATTCGTGCTGT  1036

Query  864  GAAGAGGGAACAATTCAAGCAACAACTAAAGGAAAAGCCATCAGAAGACATGGAATCCAATACCTTTTTTGACC  937
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GAAGAGGGAACAATTCAAGCAACAACTAAAGGAAAAGCCATCAGAAGACATGGAATCCAATACCTTTTTTGACC  1110

Query  938  CCCGAGTCTCCATTGCCCCTTCCCAGCGCCAGAGACGCACTTTTAAATTCCATGACAAGGGCAAATTTGAGAAG  1011
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CCCGAGTCTCCATTGCCCCTTCCCAGCGCCAGAGACGCACTTTTAAATTCCATGACAAGGGCAAATTTGAGAAG  1184

Query 1012  ATTGCTCAGCGATTACGGACAAAGGCTCAACTGGAGAAGCTACAGGCAGAGATTTCACAAGCAGCTCGAAAAAC  1085
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  ATTGCTCAGCGATTACGGACAAAGGCTCAACTGGAGAAGCTACAGGCAGAGATTTCACAAGCAGCTCGAAAAAC  1258

Query 1086  AGGCATCCATACTTCGACTAGGCTTGCCCTCATTGCTCCTAAGAAGGAGCTAAAGGAAGGAGATATTCCTGAAA  1159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AGGCATCCATACTTCGACTAGGCTTGCCCTCATTGCTCCTAAGAAGGAGCTAAAGGAAGGAGATATTCCTGAAA  1332

Query 1160  TTGAGTGGTGGGACTCTTACATAATCCCCAATGGCTTTGATCTTACAGAGGAAAATCCCAAGAGAGAAGATTAT  1233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TTGAGTGGTGGGACTCTTACATAATCCCCAATGGCTTTGATCTTACAGAGGAAAATCCCAAGAGAGAAGATTAT  1406

Query 1234  TTTGGAATCACAAATCTTGTTGAACATCCAGCCCAGCTCAATCCTCCAGTTGACAATGACACACCAGTTACTCT  1307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TTTGGAATCACAAATCTTGTTGAACATCCAGCCCAGCTCAATCCTCCAGTTGACAATGACACACCAGTTACTCT  1480

Query 1308  GGGAGTATATCTTACCAAGAAGGAACAGAAAAAACTTCGGAGACAAACAAGGAGGGAAGCACAGAAGGAACTAC  1381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  GGGAGTATATCTTACCAAGAAGGAACAGAAAAAACTTCGGAGACAAACAAGGAGGGAAGCACAGAAGGAACTAC  1554

Query 1382  AAGAAAAAGTCAGGCTGGGCCTGATGCCTCCTCCAGAACCCAAAGTGAGAATTTCTAATTTGATGCGAGTATTA  1455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  AAGAAAAAGTCAGGCTGGGCCTGATGCCTCCTCCAGAACCCAAAGTGAGAATTTCTAATTTGATGCGAGTATTA  1628

Query 1456  GGAACAGAAGCTGTTCAAGACCCCACGAAGGTAGAAGCCCACGTCAGAGCTCAGATGGCAAAAAGACAGAA---  1526
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct 1629  GGAACAGAAGCTGTTCAAGACCCCACGAAGGTAGAAGCCCACGTCAGAGCTCAGATGGCAAAAAGACAGAACCC  1702

Query 1527  -------------------------------------------------------AGCGCATGAAGAGGCCAAC  1545
                                                                   |||||||||||||||||||
Sbjct 1703  TGCCTCTGATCTTCAATGCCTTTCTCACTTGTGGATGTCCTTCCTGTCACGACAGAGCGCATGAAGAGGCCAAC  1776

Query 1546  GCTGCCCGAAAACTCACAGCAGAACAGAGAAAGGTCAAGAAAATTAAAAAGCTTAAAGAAGACATTTCACAGGG  1619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GCTGCCCGAAAACTCACAGCAGAACAGAGAAAGGTCAAGAAAATTAAAAAGCTTAAAGAAGACATTTCACAGGG  1850

Query 1620  GGTACACATATCTGTATATAGAGTTCGAAATTTGAGCAACCCAGCCAAGAAGTTCAAGATTGAAGCCAATGCTG  1693
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GGTACACATATCTGTATATAGAGTTCGAAATTTGAGCAACCCAGCCAAGAAGTTCAAGATTGAAGCCAATGCTG  1924

Query 1694  GGCAACTGTACCTGACAGGGGTGGTGGTACTGCACAAGGATGTCAACGTGGTAGTAGTGGAAGGGGGCCCCAAG  1767
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  GGCAACTGTACCTGACAGGGGTGGTGGTACTGCACAAGGATGTCAACGTGGTAGTAGTGGAAGGGGGCCCCAAG  1998

Query 1768  GCCCAGAAGAAATTTAAGCGTCTTATGCTGCATCGGATAAAGTGGGATGAACAGACATCTAACACAAAGGGAGA  1841
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  GCCCAGAAGAAATTTAAGCGTCTTATGCTGCATCGGATAAAGTGGGATGAACAGACATCTAACACAAAGGGAGA  2072

Query 1842  TGATGATGAGGAGTCTGATGAGGAAGCTGTGAAGAAAACCAACAAATGTGTACTAGTCTGGGAGGGTACAGCCA  1915
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  TGATGATGAGGAGTCTGATGAGGAAGCTGTGAAGAAAACCAACAAATGTGTACTAGTCTGGGAGGGTACAGCCA  2146

Query 1916  AAGACCGGAGCTTTGGAGAGATGAAGTTTAAACAGTGTCCTACAGAGAACATGGCTCGTGAGCATTTCAAAAAG  1989
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  AAGACCGGAGCTTTGGAGAGATGAAGTTTAAACAGTGTCCTACAGAGAACATGGCTCGTGAGCATTTCAAAAAG  2220

Query 1990  CATGGGGCTGAACACTACTGGGACCTTGCGCTGAGTGAATCTGTGTTAGAGTCCACTGAT--------------  2049
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct 2221  CATGGGGCTGAACACTACTGGGACCTTGCGCTGAGTGAATCTGTGTTAGAGTCCACTGATTGAGACTACTGCAA  2294

Query 2050  --------------------------------------------------------------------------  2049
                                                                                      
Sbjct 2295  GCCCTTGCCTCTCCTCCCTTGCCTTTGTCTCTTCAGTCCTCTCACTTATTCTATTTCCCAACCCCCTCCCACTT  2368

Query 2050  --------------------------------------------------------------------------  2049
                                                                                      
Sbjct 2369  GTTTGTGTGATCTCAGAACTGTGCCAAGCAGACACTGGGACAAAGGGAGAATATCTTGCTCCCCTCCTGAGTCA  2442

Query 2050  --------------------------------------------------------------------------  2049
                                                                                      
Sbjct 2443  GCCTGGTGTTGCCCTTTATTCCCCTTATGTGCATATGATTAAAGAGTTATTTTTAAACTTGGTGTGATATTTTT  2516

Query 2050  ---------------------------------  2049
                                             
Sbjct 2517  CACACATTCGTAAGTAAAAAAAAAAAAAAAAAA  2549

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