Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02234
Subject:
NM_018901.4
Aligned Length:
2935
Identities:
2384
Gaps:
176

Alignment

Query    1  ATGTTATACTCAAGTCGAGGAGAT-------CCAGAGGGT-CAGCCTCTACTGCTCTCGCTTCTGATCCTCGCA  66
            |||.|.|.|           ||||       ||.|.|||| |||..|||.||||||||||||||..||||||||
Sbjct    1  ATGGTTTCC-----------AGATGTAGCTGCCTGGGGGTCCAGTGTCTGCTGCTCTCGCTTCTTCTCCTCGCA  63

Query   67  ATGTGGGTGGTGGGGAGCGGCCAGCTCCACTACTCCGTCCCGGAGGAAGCCGAACACGGCACCTTCGTGGGCCG  140
            ...||||.|||||||||||||||||||||||||||.|||...|||||.|||..|||||||||||||||||||||
Sbjct   64  GCCTGGGAGGTGGGGAGCGGCCAGCTCCACTACTCAGTCTACGAGGAGGCCAGACACGGCACCTTCGTGGGCCG  137

Query  141  CATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCAGTTGGATTCCAAAGGCCGCG  214
            |||||||||||||||||||||||||||||||||||||||||.|||||||||||.|.|||..||||||.|.|.||
Sbjct  138  CATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAAGACACG  211

Query  215  GGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGC  288
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct  212  GGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATTGACCGCGAGGAGCTGTGC  285

Query  289  GGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTAGACAGGCCGCTGCAGGTTTTCCATGTGGACGT  362
            ||||||||||.||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct  286  GGGCGGAGCGTGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGT  359

Query  363  GGAGGTGAAGGACATTAACGACAACCC-TCCAGTGTTCCCAGCGACACAAAAGAATCTGTTCATCGCGGAATCC  435
            |||.||||||||||||||||||||||| .|||| ||||.|.|..|||.||.|.||.||.|..||..|.||||||
Sbjct  360  GGAAGTGAAGGACATTAACGACAACCCGCCCAG-GTTCTCCGTAACAGAACAAAAGCTCTCAATACCTGAATCC  432

Query  436  AGGCCGCTTGACTCTCGGTTTCCACTAGAGGGCGCGTCCGATGCAGATATCGGGGAGAACGCCCTGCTCACTTA  509
            ||.|.||||||||||||.|||||||||||.|||||.||.|||||.|||.|.||.||||||||..||||.|||||
Sbjct  433  AGACTGCTTGACTCTCGATTTCCACTAGAAGGCGCATCTGATGCGGATGTTGGAGAGAACGCATTGCTTACTTA  506

Query  510  CAGACTGAGCCCCAATGAGTATTTCTTCCTGGACGT-------------GCCAACCAG-CAA----CCAGCAGG  565
            ||.|||.||.||.|||||||||||..|.||.||..|             |.|||  || |||    ||||    
Sbjct  507  CAAACTCAGTCCAAATGAGTATTTTGTTCTTGATATTATAAACAAAAAAGACAA--AGACAAATTCCCAG----  574

Query  566  TAAAACCTCTTGGACTTGTATTACGGAAACTTTTAGACAGAGAAGAAACTCCGGAGCTTCATTTATTGCTCACG  639
                      ||  |||||..|.|||||.||..|.||..|.|||||||.|||..||||..|.||.|||.|.||.
Sbjct  575  ----------TG--CTTGTTCTGCGGAAGCTGCTGGATCGTGAAGAAAATCCTCAGCTAAAGTTGTTGTTGACA  636

Query  640  GCCACCGATGGAGGCAAACCCGAGCTGACTGGCACCGTTCAATTACTCATCACGGTACTGGACAACAATGACAA  713
            ||.||.||||||||||||||.||..|.||.||..|.|||....|.||.|||..|||..|.||...||||||.||
Sbjct  637  GCAACTGATGGAGGCAAACCTGAATTTACCGGATCTGTTTCTCTGCTGATCCTGGTGTTAGATGCCAATGATAA  710

Query  714  TGCCCCAGTGTTCGACAGAACCCTGTATACGGTGAAATTACCA-----GAAAACGTTTC----TATCGGAACGC  778
            .|||||..|.||.||||||  ||.||.||   ||||.|||..|     |||||    ||    .|.|..|||..
Sbjct  711  CGCCCCTATCTTTGACAGA--CCGGTTTA---TGAAGTTAAGATGTATGAAAA----TCAAGTGAACCAAACAT  775

Query  779  TGGTGATTCACCCCAATGCCTCAGATTTAGACGAAGGCTTGAATGGGGATATTATTTACTCCTT---CTCCAGT  849
            |.||.||.|..|.|||.||.||.||||..||.|||||..|.||...|||.||.||.||.||.||   |||    
Sbjct  776  TAGTAATACGGCTCAACGCTTCTGATTCGGATGAAGGAATAAACAAGGAAATGATGTATTCATTTAGCTC----  845

Query  850  GATGTT---TCTCCA-----GATATAAAATCCAAGTTCCACATGGACCCCTTAA----------GTGGGGCAAT  905
                ||   || |||     |||| |.||...||.||     ||||     |||          | ||.|.|||
Sbjct  846  ----TTTGGTC-CCACCCACGATA-AGAAGGAAATTT-----TGGA-----TAAACGAAAGGACG-GGAGAAAT  902

Query  906  CACAGTGATAGGA--CATATGGATTTTGAAGAAAGTAGAGCACAC-----AAGATCCCAGTCGAGGCTGTCGAT  972
            .|.||| |.|.||  | |||.||.|||||.||.||||    ||||     || ||.|..||.||.|.|...|||
Sbjct  903  AAAAGT-AAATGATGC-TATTGACTTTGAGGACAGTA----ACACTTATGAA-ATTCATGTAGATGTTACAGAT  969

Query  973  AAAGGCTTCCCACCCCTGGCTGGTCATTGTACACTTCTTGTGGAAGTTGTGGATGTAAATGACAATGCTCCACA  1046
            ||.||...||||||..|||.||||||.||.||..|.||.||||||.|..||||||.||||||.|||.|.||..|
Sbjct  970  AAGGGAAACCCACCTATGGTTGGTCACTGCACGGTCCTAGTGGAACTACTGGATGAAAATGATAATTCACCTGA  1043

Query 1047  GTTGACTATCAAAACGCTCTCGGTTCCTGTAAAAGAGGACGCACAACTGGGGACAGTTATTGCCCTGATTAGTG  1120
            |.|||.|.|||...|.||.||..|.||.||.|||||.||.||.|||.||||.||.||.||||||||.||.||.|
Sbjct 1044  GGTGATTGTCACTTCTCTGTCTCTCCCAGTGAAAGAAGATGCTCAAGTGGGCACCGTCATTGCCCTAATCAGCG  1117

Query 1121  TGATC-GACCTAGACGCAGATGCCAACGGGCAGGTTACCTGCTCCCTGACGCCCCACGTCCCCTTCAAGCTGGT  1193
            | .|| ||||..||..|||..||||||||.|||||.||||||||.||||||||.|||||.||.|||||||||||
Sbjct 1118  T-TTCTGACCATGATTCAGGAGCCAACGGACAGGTCACCTGCTCTCTGACGCCTCACGTTCCGTTCAAGCTGGT  1190

Query 1194  GTCCACCTACAAGAATTACTACTCGTTGGTGCTGGACAGAGCTCTGGACCGCGAGAGTGTGTCCGCCTACGAGC  1267
            ||||||||||||||||||||||||.||||||||||||||.|||||||||||||||||.|||||.|||||.||||
Sbjct 1191  GTCCACCTACAAGAATTACTACTCATTGGTGCTGGACAGCGCTCTGGACCGCGAGAGGGTGTCGGCCTATGAGC  1264

Query 1268  TGGTGGTTACCGCGCGGGACGGGGGCTCGCCTTCACTGTGGGCCACGGCCAGGGTGTCTGTGGAGGTGGCCGAC  1341
            |||||||.||||||||||||||||||||||||.|.|||||||||||||||||.|||||||||||||||||||||
Sbjct 1265  TGGTGGTGACCGCGCGGGACGGGGGCTCGCCTCCGCTGTGGGCCACGGCCAGCGTGTCTGTGGAGGTGGCCGAC  1338

Query 1342  GTGAACGACAACGCACCAGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCGGGCTG  1415
            ||||||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1339  GTGAACGACAACGCGCCTGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCAGGCTG  1412

Query 1416  CCACATCTTCACGGTGTCTGCGCGGGACGCTGACGCGCAGGAGAACGCCCTGGTGTCCTACTCGCTGGTGGAGC  1489
            ||||||||||||||||||||||.|||||||.||||||||||||||||||||||||||||||||.||||||||||
Sbjct 1413  CCACATCTTCACGGTGTCTGCGTGGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCTCTGGTGGAGC  1486

Query 1490  GGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCAGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAG  1563
            |||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 1487  GGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAG  1560

Query 1564  CCGTTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCTCTGGG  1637
            |||.|||||||||||||||||||||||||||||||||||||||||||||||||.|.||||||||||||||||||
Sbjct 1561  CCGCTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGCGCGCGATGGGGGCGTGCCGCCTCTGGG  1634

Query 1638  CAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAATGCGCCGGCGCTGCTGACACCT-CGGATG  1710
            |||||||.|||||||||||||||||||||||||||||||||||||.||.||.|||||||||.|..|| |.|.||
Sbjct 1635  CAGCAACTTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAACGCTCCCGCGCTGCTGGCGTCTCCCGCTG  1708

Query 1711  AGGGGCACTGACGGCGCAGTGAGCGAGATGGTGCTGCGGTCGGTGGGCGCCGGCGTAGTGGTGGGGAAGGTGCG  1784
             |..||.|.|.|||.|||||.||.|||.||||||||||||||||||..||.||....|||||||..||||||||
Sbjct 1709  -GCAGCGCGGGCGGTGCAGTCAGTGAGCTGGTGCTGCGGTCGGTGGTTGCGGGTCACGTGGTGGCTAAGGTGCG  1781

Query 1785  CGCAGTGGACGCCGACTCGGGCTACAACGCGTGGCTTTCATACGAGCTGCAGCCAGAAACGGCCAGCGCGAGCA  1858
            ||||||||||||.|||||.||.||||||||||||||.||.||.||..|||||.|.|...|||...|.||..|||
Sbjct 1782  CGCAGTGGACGCTGACTCTGGATACAACGCGTGGCTGTCGTATGAATTGCAGTCGGCGGCGGTTGGTGCACGCA  1855

Query 1859  TCCCGTTCCGCGTGGGGCTGTACACGGGCGAGATCAGCACAACGCGTGCCCTGGACGAAACGGACGCACCGCGC  1932
            |||||||.|||||||||||||||||||||||||||||.||.|||||.||.|||||.||.||.|||.|.||.|||
Sbjct 1856  TCCCGTTTCGCGTGGGGCTGTACACGGGCGAGATCAGTACGACGCGCGCTCTGGATGAGACTGACTCGCCACGC  1929

Query 1933  CAGCGCCTACTGGTGCTGGTGAAAGACCACGGGGAGCCAGCGCTGACGGCCACGGCCACTGTGCTGGTGTCGCT  2006
            |||||||||||||||||||||||.|||||.||.|||||..|||||||||||||||||||||||||.||||||||
Sbjct 1930  CAGCGCCTACTGGTGCTGGTGAAGGACCATGGCGAGCCGTCGCTGACGGCCACGGCCACTGTGCTTGTGTCGCT  2003

Query 2007  GGTGGAGAGCGGCCAGGCGCCAAAGTCATCGTCGCGGGCGTCAGTGGGTGCCACG-GGC-CCCGAGGTGACGCT  2078
            .||||||.||.|||||||.||.|||.|.|||||||||||.||||||||     || ||| |||||||||.|.||
Sbjct 2004  TGTGGAGGGCAGCCAGGCACCCAAGGCCTCGTCGCGGGCTTCAGTGGG-----CGTGGCGCCCGAGGTGGCCCT  2072

Query 2079  GGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTGTCTAGCCTGTTGGTTCTCACGCTGCTGCTGT  2152
            |||||||||||||||||||||||||||||||||||||||||||||.|||.||.||||.||||||||||||||||
Sbjct 2073  GGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTGTCCAGCTTGCTGGTGCTCACGCTGCTGCTGT  2146

Query 2153  ACACTGTGCTGCGGTGCTCGGCGATGCCCACCGAGGGCGAGTGCGCGCCTGGCAAGCCGACGCTGGTGTGTTCT  2226
            ||||||..|||.|||||||||||..||||||||||||||..||.|.|||.|..|||||.|||||||||||.|||
Sbjct 2147  ACACTGCACTGAGGTGCTCGGCGGCGCCCACCGAGGGCGCATGTGGGCCGGTGAAGCCCACGCTGGTGTGCTCT  2220

Query 2227  AGCGCGGTGGGGAGTTGGTCGTACTCGCAGCAGAGGAGGCAGAGGGTGTGCTCTGGCGAGGGTAAGCAGAAGAC  2300
            ||||||||||||||.|||||.|||||||||||||||.|||||||||||||.|||||.|||||...||..|||.|
Sbjct 2221  AGCGCGGTGGGGAGCTGGTCTTACTCGCAGCAGAGGCGGCAGAGGGTGTGTTCTGGGGAGGGCCTGCCCAAGGC  2294

Query 2301  CGACCTCATGGCCTTCAGCCCGGGCCTTTCTCCTTG-----TGCTGGATCTACAGAGCGAACGGG--AGAACCC  2367
            .||||||||||||||||||||..|||||.|.||.||     ||.|.|||       |.|.|||||  |||.|..
Sbjct 2295  GGACCTCATGGCCTTCAGCCCCAGCCTTCCACCATGCCCAATGGTAGAT-------GTGGACGGGGAAGATCAG  2361

Query 2368  TCTGCTTCCTCAGATTCAA----------CTGGGAAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCT  2431
            |||          |||..|          ||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 2362  TCT----------ATTGGAGGGGACCACTCTAGGAAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCT  2425

Query 2432  CCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCT  2505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2426  CCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCT  2499

Query 2506  GATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGC  2579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2500  GATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGC  2573

Query 2580  GGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGC  2653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2574  GGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGC  2647

Query 2654  CCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGAC  2727
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2648  CCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGAC  2721

Query 2728  AAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGAC  2801
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2722  AAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGAC  2795

Query 2802  CCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG  2850
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2796  CCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG  2844

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