Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02234
Subject:
NM_018902.4
Aligned Length:
2951
Identities:
2389
Gaps:
205

Alignment

Query    1  ATGTT--ATACTCA-AGTCGAGGAGATCCAGAGGGTCAGCC----TCTACTGCTCTCGCTTCTGATCCTCGCAA  67
            |||||  .|..||| ||  .|||.|||     .||.||.||    .||||.|||||.||||||..||||||.|.
Sbjct    1  ATGTTTGGTTTTCAGAG--AAGGGGAT-----TGGGCACCCCACGACTACAGCTCTGGCTTCTCCTCCTCGAAT  67

Query   68  TGTGGGTGGTGGGGAGCGGCCAGCTCCACTACTCCGTCCCGGAGGAAGCCGAACACGGCACCTTCGTGGGCCGC  141
            |.||||.|||||||||||||||||||||||||||||||.|||||||.|||.|||||||||||||||||||||||
Sbjct   68  TCTGGGAGGTGGGGAGCGGCCAGCTCCACTACTCCGTCTCGGAGGAGGCCAAACACGGCACCTTCGTGGGCCGC  141

Query  142  ATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCAGTTGGATTCCAAAGGCCGCGG  215
            ||||||||||||||||||||||||||||||||||||||||.|||||||||||.|.|||..||||||...|..||
Sbjct  142  ATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAACACATGG  215

Query  216  GGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCG  289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  216  GGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCG  289

Query  290  GGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTAGACAGGCCGCTGCAGGTTTTCCATGTGGACGTG  363
            |||.||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||.|||||
Sbjct  290  GGCAGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGAACGTG  363

Query  364  GAGGTGAAGGACATTAACGACAACCCTCCAGTGTT----CCCAGCGACACAAAAGAATCTGTTCATCGCGGAAT  433
            ||||||||||||||||||||||||||.||.|||||    |.|||.|| |||||||   |||.|.||.|||||||
Sbjct  364  GAGGTGAAGGACATTAACGACAACCCGCCGGTGTTCTCGCTCAGAGA-ACAAAAG---CTGCTGATTGCGGAAT  433

Query  434  CCAGGC---CGCTTGACTCTCGGTTTCCACTAGAGGGCGCGTCCGATGCAGATATCGGGGAGAACGCCCTGCTC  504
            |.|.||   ||   |||||.||.||||||||||||||.||.||.|||||.||.||.|..|||||.||.||..|.
Sbjct  434  CTAAGCAATCG---GACTCGCGTTTTCCACTAGAGGGAGCTTCTGATGCTGACATTGAAGAGAATGCTCTATTG  504

Query  505  ACTTACAGACTGAGCCCCAATGAGTA--TTTCTTCCTGGACGTGCCAACCAGCAA----CCAGCAGGTAAAACC  572
            ||.|||||.||.||....||||||||  ||||||  |.||  |.|  ||||.|||    ..|||||.|.|||..
Sbjct  505  ACCTACAGGCTAAGTAAAAATGAGTATTTTTCTT--TAGA--TTC--ACCAACAAATGGTAAGCAGATTAAAAG  572

Query  573  TCTTGGACTTGTATTACGGAAACTTTTAGACAGAGAAGAAACTCCGGAGCTTCATTTATTGCTCACGGCCACCG  646
            .||...||||.|.|||..|||...|.|.||.|||||..||||||||||.|||.||||..||||.||.||.||.|
Sbjct  573  ACTGTCACTTATTTTAAAGAAGTCTCTGGATAGAGAGAAAACTCCGGAACTTAATTTGCTGCTAACAGCTACAG  646

Query  647  ATGGAGGCAAACCCGAGCTGACTGGCACCGTT---CAATTACTCATCACGGTACTGGACAACAATGACAATGCC  717
            |.||.||.|||||.|||||.||||||||||||   |..|||.||  || .||..||||...|||.|||||||..
Sbjct  647  ACGGGGGAAAACCAGAGCTTACTGGCACCGTTCGGCTGTTAGTC--CA-AGTCTTGGATGTCAACGACAATGAT  717

Query  718  CCAGTGTTCGA-----CAGAACCCTGTATACGGTGA-AATTACCAGAAAACGTTTCTATCGGAACGCTGGTGAT  785
            ||||.|||.||     |||||     ||||.||||| ..||| ..|||||.|.|.|||..|.|||.||.|||.|
Sbjct  718  CCAGAGTTTGATAAATCAGAA-----TATAAGGTGAGCCTTA-TGGAAAATGCTGCTAAAGAAACTCTTGTGCT  785

Query  786  TCACCCCAATGCCTCAGATTTAGACGAAGGCTTGAATGGGGATATTATTTACTCCTTCTCCAGTGATGTTTCTC  859
            ..|.|..||.|||.||||...|||||||||..|.|||||.||..|.|..|||||||       |.||||     
Sbjct  786  CAAACTAAACGCCACAGACCGAGACGAAGGAGTCAATGGAGAGGTAACATACTCCT-------TAATGT-----  847

Query  860  CAGATATAA----AATCCAAG--------TTCCAC------------ATGGACCCCTTAAGT--GGGGCAATCA  907
            || || |||    |||..|||        ||.|||            |||||     .||||  |||.||||  
Sbjct  848  CA-AT-TAAGCCCAATGGAAGACACTTATTTACACTAGATCAAAATAATGGA-----GAAGTGAGGGTCAAT--  912

Query  908  CAGTGATAGGACATATGGATTTTGAAGAAAGTAGAGCACACAAG---------ATCCCAGTCGAGGCTGTCGAT  972
                    |||..|.|.||||.||||||||         |||||         ||...|||..|||||...|||
Sbjct  913  --------GGAACTTTAGATTATGAAGAAA---------ACAAGTTTTATAAAATTGAAGTACAGGCTACAGAT  969

Query  973  AAAGG--CTTCCCACCCCTGGCTGGTCATTGTACACTTCT-TGTGGAAGTTGTGGATGTAAATGACAATGCTCC  1043
            ||.||  ||  ||.||..||||.|||||.|||||| .||| .||||||.|..||||....||.||.||..||||
Sbjct  970  AAGGGGACT--CCCCCAATGGCAGGTCACTGTACA-GTCTGGGTGGAAATCTTGGACACCAACGATAACTCTCC  1040

Query 1044  --ACAGT-----TGACTATCAAAACGCT-----CTCGGTTCCTGTAAAAGAGGACGCACAACTGGGGACAGTTA  1105
              | |||     ||||| ||      ||     |||    ||.|||..|||||||||.||.|...|.||.||.|
Sbjct 1041  TGA-AGTCGCCGTGACT-TC------CTTGTCCCTC----CCAGTACGAGAGGACGCTCAGCCCAGCACGGTCA  1102

Query 1106  TTGCCCTGATTAGTGTGATC-GACCTAGACGCAGATGCCAACGGGCAGGTTACCTGCTCCCTGACGCCCCACGT  1178
            ||||||||||.||.||| || ||||..|||.|||.||.||||||.|||||.||||||||.||||||||||||||
Sbjct 1103  TTGCCCTGATCAGCGTG-TCTGACCGTGACTCAGGTGTCAACGGACAGGTGACCTGCTCGCTGACGCCCCACGT  1175

Query 1179  CCCCTTCAAGCTGGTGTCCACCTACAAGAATTACTACTCGTTGGTGCTGGACAGAGCTCTGGACCGCGAGAGTG  1252
            .||||||||||||||||||||||.||||||||||||||||||||||||||||||.||.|||||||||||||..|
Sbjct 1176  TCCCTTCAAGCTGGTGTCCACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGCGCCCTGGACCGCGAGAACG  1249

Query 1253  TGTCCGCCTACGAGCTGGTGGTTACCGCGCGGGACGGGGGCTCGCCTTCACTGTGGGCCACGGCCAGGGTGTCT  1326
            |||..|||||.||.||||||||.||.||||||||.|||||.||||||||.||||||||||||||||||||.||.
Sbjct 1250  TGTGGGCCTATGAACTGGTGGTGACTGCGCGGGATGGGGGTTCGCCTTCTCTGTGGGCCACGGCCAGGGTATCC  1323

Query 1327  GTGGAGGTGGCCGACGTGAACGACAACGCACCAGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAA  1400
            ||||||||||||||||||||||||||.||.||.||||||||.|||.||||||||||.|||||||||||||||||
Sbjct 1324  GTGGAGGTGGCCGACGTGAACGACAATGCGCCTGCGTTCGCACAGCCCGAGTACACCGTGTTCGTGAAGGAGAA  1397

Query 1401  CAACCCGCCGGGCTGCCACATCTTCACGGTGTCTGCGCGGGACGCTGACGCGCAGGAGAACGCCCTGGTGTCCT  1474
            ||||||.||.|||||||||||||||||.|||||.|||||||||||.|||||||||||||||||.||||||||||
Sbjct 1398  CAACCCACCAGGCTGCCACATCTTCACAGTGTCGGCGCGGGACGCGGACGCGCAGGAGAACGCGCTGGTGTCCT  1471

Query 1475  ACTCGCTGGTGGAGCGGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCAGTGCACGCGGAGAGCGGCAAG  1548
            ||||||||||||||||||||||||||||.|||.|||||||||||||||||||.|||||||||||||||||||||
Sbjct 1472  ACTCGCTGGTGGAGCGGCGGTTGGGCGACCGCGCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAG  1545

Query 1549  GTGTACGCGCTGCAGCCGTTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGCGCGCGACGCGGG  1622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1546  GTGTACGCGCTGCAGCCGTTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGCGCGCGATGCGGG  1619

Query 1623  CGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAATGCGCCGGCGCTGC  1696
            |||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||.||||||||.||||
Sbjct 1620  CGTGCCGCCTCTGAGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAACGCGCCGGCACTGC  1693

Query 1697  TGACACCTCGGATGAGG--GGCA---CTGACGGCGCAGTGAGCGAGATGGTGCTGCGGTCGGTGGGCGCCGGCG  1765
            ||.|..|||     |||  ||||   |.|..||||||||.|.|.||.|.||.|.||||||||||||.||.|||.
Sbjct 1694  TGGCGACTC-----AGGCTGGCAGCGCGGGAGGCGCAGTTAACAAGCTAGTACCGCGGTCGGTGGGTGCGGGCC  1762

Query 1766  TAGTGGTGGGGAAGGTGCGCGCAGTGGACGCCGACTCGGGCTACAACGCGTGGCTTTCATACGAGCTGCAGCCA  1839
            ..|||||||.||||||||||||||||||.||.|||||.|||||||||||||||||||||||.||..|||||||.
Sbjct 1763  ACGTGGTGGCGAAGGTGCGCGCAGTGGATGCGGACTCAGGCTACAACGCGTGGCTTTCATATGAATTGCAGCCG  1836

Query 1840  GAAACGGCCAGCGCGAGCATCCCGTTCCGCGTGGGGCTGTACACGGGCGAGATCAGCACAACGCGTGCCCTGGA  1913
            |...|||.|.||.||.|||||||||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 1837  GCGGCGGGCGGCTCGCGCATCCCGTTCCGCGTGGGGCTGTACACGGGCGAGATAAGCACAACGCGTGCCCTGGA  1910

Query 1914  CGAAACGGACGCACCGCGCCAGCGCCTACTGGTGCTGGTGAAAGACCACGGGGAGCCAGCGCTGACGGCCACGG  1987
            |||..|.|||.|.||||||||.||.||.||.||.||||||||.||.|||||.|||||.||||||||||||||||
Sbjct 1911  CGAGGCAGACTCGCCGCGCCACCGACTTCTAGTACTGGTGAAGGATCACGGTGAGCCGGCGCTGACGGCCACGG  1984

Query 1988  CCACTGTGCTGGTGTCGCTGGTGGAGAGCGGCCAGGCGCCAAAGTCATCGTCGCGGGCGTCAGTGGGTGCCACG  2061
            ||||.||||||||||||.|||||||||||||.||||||||||||.|.||.||.|||.|.|..|.|||.|||.||
Sbjct 1985  CCACCGTGCTGGTGTCGTTGGTGGAGAGCGGACAGGCGCCAAAGGCCTCTTCCCGGACTTTGGCGGGCGCCGCG  2058

Query 2062  GGCCCCGAGG-TGACGCTGGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTGTCTAGCCTGTTGG  2134
            .||||.|||| || ||||||||||||||||||||||||||||||||||||||||||.||||||.|||||..|||
Sbjct 2059  AGCCCAGAGGCTG-CGCTGGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGTGGTGTCCAGCCTCCTGG  2131

Query 2135  TTCTCACGCTGCTGCTGTACACTGTGCTGCGGTGCTCGGCGATGCCCACCGAGGGCGAGTGCGCGCCTGGCAAG  2208
            |.|||||||||||||||||.||.|.||||.||||.|||||.|.||||||.|||||||.|||||||||.||.|||
Sbjct 2132  TACTCACGCTGCTGCTGTATACGGCGCTGTGGTGGTCGGCAACGCCCACTGAGGGCGCGTGCGCGCCGGGGAAG  2205

Query 2209  CCGACGCTGGTGTGTTCTAGCGCGGTGGGGAGTTGGTCGTACTCGCAGCAGAGGAGGCAGAGGGTGTGCTCTGG  2282
            ||.|||||||||||.||..|||||||||||||.|||||.|||||||||||||||.||||||||||||||||||.
Sbjct 2206  CCCACGCTGGTGTGCTCCCGCGCGGTGGGGAGCTGGTCATACTCGCAGCAGAGGCGGCAGAGGGTGTGCTCTGA  2279

Query 2283  CGAGGGTAAGCAGAAGACCGACCTCATGGCCTTCAGCCCGGGCCTTTCTCCTTGTGCTGGATCTACAGAG--CG  2354
            .|||||....|..|||||.||||||||||||||||||||..|.|||.|| ||.|..|||.|  ||.||||  .|
Sbjct 2280  GGAGGGCCCACCTAAGACGGACCTCATGGCCTTCAGCCCCAGTCTTCCT-CTAGGTCTGAA--TAAAGAGGAGG  2350

Query 2355  AACGGGA-------GAACCCTCTGCTTCCTCAGATTCAA------CTGGGAAGCCACGACAGCCCAACCCTGAC  2415
            ||.||||       ||.|            |||..||||      |.||..|||||||||||||||||||||||
Sbjct 2351  AAGGGGAAAGACAGGAGC------------CAGGGTCAAATCACCCCGGACAGCCACGACAGCCCAACCCTGAC  2412

Query 2416  TGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGC  2489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2413  TGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGC  2486

Query 2490  TGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGT  2563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2487  TGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGT  2560

Query 2564  CCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCC  2637
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2561  CCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCC  2634

Query 2638  GGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTAC  2711
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2635  GGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTAC  2708

Query 2712  TAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGA  2785
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2709  TAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGA  2782

Query 2786  AGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG  2850
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2783  AGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG  2847

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