Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02234
Subject:
NM_018904.3
Aligned Length:
2932
Identities:
2398
Gaps:
164

Alignment

Query    1  ATGTTATACTCAAGTCGAGGAGATCC-AGAGGGTCAGCCTCTACTGCTCTCGCTTCTGATCCTCGCAATGTGGG  73
            |||.|.|..||..|.|.|||||..|| |||..| |.||..||||||||||.||||||||||||||||...||||
Sbjct    1  ATGCTGTCTTCCTGGCAAGGAGGCCCAAGACCG-CGGCAACTACTGCTCTGGCTTCTGATCCTCGCAGCCTGGG  73

Query   74  TGGTGGGGAGCGGCCAGCTCCACTACTCCGTCCCGGAGGAAGCCGAACACGGCACCTTCGTGGGCCGCATCGCG  147
            .|..|||.||.|||||||||||||||||||||||.||||||||..||||||||||||||||||||||||||||.
Sbjct   74  AGACGGGTAGTGGCCAGCTCCACTACTCCGTCCCCGAGGAAGCAAAACACGGCACCTTCGTGGGCCGCATCGCT  147

Query  148  CAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCAGTTGGATTCCAAAGGCCGCGGGGACCT  221
            ||||||||||||||||||||||||||||||||||||||||||||||.|.|||..||||||.|.|.|||||||||
Sbjct  148  CAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCGGGTGGCGTCCAAAAGACACGGGGACCT  221

Query  222  TCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCGGGCGGA  295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct  222  TCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGTGGGCGGA  295

Query  296  GCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTAGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAGGTG  369
            ||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||||||||.|||.|||||
Sbjct  296  GCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCTCTGCAGGTTTTCCATGTGGAGGTGAAGGTG  369

Query  370  AAGGACATTAACGACAACCCTCCAGTGTTCCC----AGCGACACAAAAGAATC---TGTTCATCGCGGAATCCA  436
            |.||||||||||||||||||.||..|.|||||    |||       |||||.|   |..||||.||.|||||.|
Sbjct  370  AGGGACATTAACGACAACCCGCCCATATTCCCTGAAAGC-------AAGAAACGAATAATCATTGCAGAATCTA  436

Query  437  GGCCGCTTGACTCTCGGTTTCCACTAGAGGGCGCGTCCGATGCAGATATCGGGGAGAAC---GCCCTGCTCACT  507
            |.||.|..||..||||.|||||||||||.|||||.||||||||||||||.||.|..|||   ||..||   ||.
Sbjct  437  GACCTCCGGAAACTCGATTTCCACTAGATGGCGCATCCGATGCAGATATTGGAGTAAACTCGGCATTG---ACC  507

Query  508  TACAGACTGAGCCCCAATGAGTATTT--CTTCCTGGACGTGCCAACCAGCAACCAGCAGGTAAAACCTCTT---  576
            |||.|||||...|||||.||.|||||  |||  ||||||..|.||.|||.....|||     |||..||||   
Sbjct  508  TACCGACTGGATCCCAACGATTATTTCACTT--TGGACGCACAAAACAGTCTTGAGC-----AAATGTCTTCAT  574

Query  577  --GGACTTGTATTACGGAAACTTTTAGACAGAGAAGAAACTCCGGAGCTTCATTTATTGCTCACGGCCACCGAT  648
              ..|||||||.|..|||||....|.||||||||.||||.||.|||.|.|..||||||.||.||.||||..|||
Sbjct  575  TATCACTTGTACTGAGGAAAACACTGGACAGAGAGGAAATTCAGGAACATAGTTTATTACTGACAGCCAGTGAT  648

Query  649  GGAGGCAAACCCGAGCTGACTGGCACCGTTCAATTACTCATCACGGTACTGGACAACAATGACAATGCCCCAGT  722
            |||||.||||||||||||||||||||.|||||..|.|||||||||.|.||||||...||||||||.|||||.|.
Sbjct  649  GGAGGTAAACCCGAGCTGACTGGCACAGTTCAGCTGCTCATCACGATTCTGGACGTGAATGACAACGCCCCGGA  722

Query  723  GTTCGACAGAACCCTGTAT------ACGGTGAAATTACCAGAAAACG-TTTCTATCGGAACGCTGGTGATTCAC  789
            .||..||..|.||.|.|||      ||||||   ||   |||.|||| .|||.|| |||||..|.|||||..|.
Sbjct  723  ATTTTACCAATCCGTTTATAAAGTGACGGTG---TT---AGAGAACGCCTTCAAT-GGAACATTAGTGATCAAG  789

Query  790  CCCAATGCCTCAGATTTAGACGAAGGCTTGAATGGGGATATTATTTACTCCTT-----------------CTCC  846
            |..||||||.|||||...||.||.||....|||||.|||||..|||||||.||                 ||.|
Sbjct  790  CTAAATGCCACAGATCCTGATGATGGTACAAATGGAGATATAGTTTACTCATTTAGAAGGCCTGTATGGCCTGC  863

Query  847  AGTGATGTTTCTCCAGATATA----AAATCCAAGTTCCAC-ATGGACCCCTTAAGTGGGGCAATCACAGTGATA  915
            ||||  ||.|.|.|  ||.||    ||||||.|     || |||||             |.|||        ||
Sbjct  864  AGTG--GTATATGC--ATTTACCATAAATCCGA-----ACAATGGA-------------GAAAT--------TA  907

Query  916  GGACATA--------TGGATTTTGAAGAAAGTAGAGCACA--CAAGATCCCAGTCGAGGCTGTCGATAAAGG--  977
            |||||.|        |.|||||.|||||||..|.|..|.|  .||.||||  ||.|||||.||.||.|||||  
Sbjct  908  GGACAAAAGGCAAACTAGATTTCGAAGAAAAGAAATTATATGAAATATCC--GTGGAGGCAGTTGACAAAGGAA  979

Query  978  --CTTCCCACCCCTGGCTGGTCATTGTACACTTCTTGTGGAAGTTGTGGATGTAAATGACAATGCTCCACAGTT  1049
              .||||.|    ||||.|||||||||||.|||.|.||||||||..|.|||||||||||.||.||.|||.||.|
Sbjct  980  ATATTCCAA----TGGCGGGTCATTGTACCCTTTTGGTGGAAGTACTAGATGTAAATGATAACGCCCCAGAGGT  1049

Query 1050  GACTATCAAAACGCTCTCGGTTCCTGTAAAAGAGGACGCACA-ACTGGGGACAGTTATTGCCCTGATTAGTGTG  1122
            .||.||||...|..|.||..|.||..|.|.|||.|||.|.|| .||.|.|.|| ||||||||||.||.||||||
Sbjct 1050  TACCATCACTTCTTTGTCACTCCCCATCAGAGAAGACACTCAGCCTAGCGCCA-TTATTGCCCTAATCAGTGTG  1122

Query 1123  ATCGACCTAGACGCAGATGCCAACGGGCAGGTTACCTGCTCCCTGACGCCCCACGTCCCCTTCAAGCTGGTGTC  1196
            ..|||.|..|||.|.|...|.||.||.|||||.||||||.||.|||||||.||.||||||||||||||||||||
Sbjct 1123  TCCGATCGTGACTCTGGCTCAAATGGACAGGTCACCTGCACCTTGACGCCGCATGTCCCCTTCAAGCTGGTGTC  1196

Query 1197  CACCTACAAGAATTACTACTCGTTGGTGCTGGACAGAGCTCTGGACCGCGAGAGTGTGTCCGCCTACGAGCTGG  1270
            ||||||||||||.||||||||.||.|||||||||||.||.||||||||||||||.||.||.|||||.||.||||
Sbjct 1197  CACCTACAAGAACTACTACTCATTAGTGCTGGACAGCGCCCTGGACCGCGAGAGCGTATCAGCCTATGAACTGG  1270

Query 1271  TGGTTACCGCGCGGGACGGGGGCTCGCCTTCACTGTGGGCCACGGCCAGGGTGTCTGTGGAGGTGGCCGACGTG  1344
            ||||.||||||||||||||||||||||||||.|||||||||||||||||.|||||.||||.|||||||||||||
Sbjct 1271  TGGTGACCGCGCGGGACGGGGGCTCGCCTTCGCTGTGGGCCACGGCCAGCGTGTCGGTGGGGGTGGCCGACGTG  1344

Query 1345  AACGACAACGCACCAGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCGGGCTGCCA  1418
            |||||||||||.||.||||||||||||.|||||||||||||||||||||||||.|||||.||||||||||||||
Sbjct 1345  AACGACAACGCGCCGGCGTTCGCGCAGCCCGAGTACACGGTGTTCGTGAAGGAAAACAATCCGCCGGGCTGCCA  1418

Query 1419  CATCTTCACGGTGTCTGCGCGGGACGCTGACGCGCAGGAGAACGCCCTGGTGTCCTACTCGCTGGTGGAGCGGC  1492
            ||||||||||||||||||.|.||||||.|||||.|||||||||||.|||||.||||||||||||||||||||||
Sbjct 1419  CATCTTCACGGTGTCTGCTCAGGACGCGGACGCACAGGAGAACGCGCTGGTCTCCTACTCGCTGGTGGAGCGGC  1492

Query 1493  GGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCAGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCG  1566
            ||.||||||||||..|||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 1493  GGGTGGGCGAGCGTGCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCG  1566

Query 1567  TTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCTCTGGGCAG  1640
            ||||||||||||||||||||||||.|.||||||||||||||||||||||||.|.||||||||||||||||||||
Sbjct 1567  TTGGACCACGAGGAGCTGGAGCTGTTGCAGTTCCAGGTGAGCGCGCGCGACTCTGGCGTGCCGCCTCTGGGCAG  1640

Query 1641  CAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAATGCGCCGGCGCTGCTGACACCTCGGATGAGG-  1713
            ||||||||||||||||||||||||||||||||||||||||||.||.||||||||||||||.|| |||    || 
Sbjct 1641  CAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAACGCTCCGGCGCTGCTGACGCC-CGG----GGC  1709

Query 1714  -GGCA---CTGACGGCGCAGTGAGCGAGATGGTGCTGCGGTCGGTGGGCGCCGGCGTAGTGGTGGGGAAGGTGC  1783
             ||||   |.|..|||.|||||||||||.||.|||.||||||||||||.||.|||...|||||||.||||||||
Sbjct 1710  TGGCAGCGCGGGAGGCACAGTGAGCGAGCTGATGCCGCGGTCGGTGGGTGCAGGCCACGTGGTGGCGAAGGTGC  1783

Query 1784  GCGCAGTGGACGCCGACTCGGGCTACAACGCGTGGCTTTCATACGAGCTGCAGCCAGAAACGGCCAGCGCGAGC  1857
            ||||.|||||||||||.|||||||||||.|||||||||||.||.||..||||||..|...|||.|.|||||.||
Sbjct 1784  GCGCGGTGGACGCCGATTCGGGCTACAATGCGTGGCTTTCGTATGAATTGCAGCTGGCGGCGGTCGGCGCGCGC  1857

Query 1858  ATCCCGTTCCGCGTGGGGCTGTACACGGGCGAGATCAGCACAACGCGTGCCCTGGACGAAACGGACGCACCGCG  1931
            ||||||||||||||||||||||||||.||||||||||||||.|||||..|.||||||||...||||||.||||.
Sbjct 1858  ATCCCGTTCCGCGTGGGGCTGTACACTGGCGAGATCAGCACGACGCGCCCTCTGGACGAGGTGGACGCGCCGCA  1931

Query 1932  CCAGCGCCTACTGGTGCTGGTGAAAGACCACGGGGAGCCAGCGCTGACGGCCACGGCCACTGTGCTGGTGTCGC  2005
            |||.|||||.||||||||||||||.||||||||.|||||.|||||||||||||||||.||.||||||.||||||
Sbjct 1932  CCACCGCCTTCTGGTGCTGGTGAAGGACCACGGTGAGCCCGCGCTGACGGCCACGGCAACGGTGCTGTTGTCGC  2005

Query 2006  TGGTGGAGAGCGGCCAGGCGCCAAAGTCATCGTCGCGGGCGTCAGTGGGTGCCACGGGCCCCGAGGTGACGCTG  2079
            ||||||||||||||||.||||||.||.|.||||||.|||||||.|..||.||...|||.||.||.|.|.|||||
Sbjct 2006  TGGTGGAGAGCGGCCAAGCGCCACAGGCTTCGTCGAGGGCGTCGGCAGGCGCTGTGGGTCCAGAAGCGGCGCTG  2079

Query 2080  GTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTGTCTAGCCTGTTGGTTCTCACGCTGCTGCTGTA  2153
            |||||||||||.||.|||.|||||||.|||||||||||||||||.|||||||||||.||||||.||||||||||
Sbjct 2080  GTGGATGTCAATGTTTACTTGATCATTGCCATCTGCGCGGTGTCCAGCCTGTTGGTGCTCACGTTGCTGCTGTA  2153

Query 2154  CACTGTGCTGCGGTGCTCGGCGATGCCCACCGAGGGCGAGTGCGCGCCTGGCAAGCCGACGCTGGTGTGTTCTA  2227
            .||||.|||||||||||||||...||||||||||||||.|||||||||.||||||||.||.||.|||||.||.|
Sbjct 2154  TACTGCGCTGCGGTGCTCGGCACCGCCCACCGAGGGCGCGTGCGCGCCGGGCAAGCCCACTCTAGTGTGCTCCA  2227

Query 2228  GCGCGGTGGGGAGTTGGTCGTACTCGCAGCAGAGGAGGCAGAGGGTGTGCTCTGGCGAGGGTAAGCAGAAGACC  2301
            ||||||..|||||||||||||||||||||||||||.|||.|||||||||||||||.|||||...|||.|||||.
Sbjct 2228  GCGCGGCAGGGAGTTGGTCGTACTCGCAGCAGAGGCGGCCGAGGGTGTGCTCTGGGGAGGGCCCGCATAAGACG  2301

Query 2302  GACCTCATGGCCTTCAGCCCGGGCCTTTCTCCTTGTGCT-GGATCTACAGAGCGAAC--------GGGA----G  2362
            |||||||||||||||||.||..|||||.|||||||| || ||.|||.|||||.||||        ||||    |
Sbjct 2302  GACCTCATGGCCTTCAGTCCCAGCCTTCCTCCTTGT-CTGGGTTCTGCAGAGGGAACAGGCCAGAGGGAGGAGG  2374

Query 2363  AACCCTCTGCTTCCTCAGATTCAACTGGGA--AGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCC  2434
            |            ||||||.|  .||.|.|  ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2375  A------------CTCAGAAT--GCTTGAAAGAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCC  2434

Query 2435  TGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGAT  2508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2435  TGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGAT  2508

Query 2509  CAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGG  2582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2509  CAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGG  2582

Query 2583  TGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCG  2656
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2583  TGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCG  2656

Query 2657  ACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAA  2730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2657  ACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAA  2730

Query 2731  AGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCA  2804
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2731  AGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCA  2804

Query 2805  GGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG  2850
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2805  GGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG  2850

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