Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02234
Subject:
NM_018906.3
Aligned Length:
2914
Identities:
2398
Gaps:
128

Alignment

Query    1  ATGTTATACTCAAGTCGAGGAGATCCAGAGGGTCAGCCTCTACTGCTCTCGCTTCTGATCCTCGCAATGTGGGT  74
            |||||.|.|||..|.||||.||||||.|..|..|||...||.|||||.||.||||||.||||||||...|.||.
Sbjct    1  ATGTTGTTCTCCTGGCGAGAAGATCCTGGAGCCCAGTGCCTGCTGCTTTCTCTTCTGCTCCTCGCAGCCTCGGA  74

Query   75  GGTGGGGAGCGGCCAGCTCCACTACTCCGTCCCGGAGGAAGCCGAACACGGCACCTTCGTGGGCCGCATCGCGC  148
            |||||||||||||||||||||||||||||||.|.|||||.|||.|.||.|||||||||||||||||||||||||
Sbjct   75  GGTGGGGAGCGGCCAGCTCCACTACTCCGTCTCTGAGGAGGCCAAGCATGGCACCTTCGTGGGCCGCATCGCGC  148

Query  149  AGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCAGTTGGATTCCAAAGGCCGCGGGGACCTT  222
            |||||||||||||||||||||||||||||||||||||||||||||.|.|||..||||||.|.|.||||||||||
Sbjct  149  AGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCGGGTGGCGTCCAAAAGACACGGGGACCTT  222

Query  223  CTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCGGGCGGAG  296
            |||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||.||||||||||||||
Sbjct  223  CTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATAGACCGCGAGGAACTGTGCGGGCGGAG  296

Query  297  CGCGGAGTGCAGCATCCACCTGGAGGTGATCGTAGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAGGTGA  370
            |||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||.|||||.||||
Sbjct  297  CGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGAGGTGGAAGTGA  370

Query  371  AGGACATTAACGACAACCCTCCAGTGTTCCCAGCGACACAAAAGAATCTGTTCATCGCGGAATCCAGGCCGCTT  444
            ||||||||||.||||||.|.|||||.||.|||..|.|...||||||||||||.||..|.||||||.|.|.||.|
Sbjct  371  AGGACATTAATGACAACGCGCCAGTTTTTCCAATGGCTGTAAAGAATCTGTTTATTTCCGAATCCCGACAGCCT  444

Query  445  GACTCTCGGTTTCCACTAGAGGGCGCGTCCGATGCAGATATCGGGGAGAAC----GCCCTGCTCACTTACAGAC  514
            |.||||||||||.|.|||||||||||.||.|||||||||||||    ||||    .|..||.|.||||||||.|
Sbjct  445  GGCTCTCGGTTTTCGCTAGAGGGCGCATCAGATGCAGATATCG----GAACAAATTCGTTGTTGACTTACAGTC  514

Query  515  -TGAGCCCCAATGAGTATTTCTTCC-TGGACGTGCCAACCAGCAACCAGCAGG----TAAAACCTCTTGGACTT  582
             ||| ..|||.|||.||||| |.|| |||||||   .|..||.||..|..|||    ||||.|| ||||||||.
Sbjct  515  TTGA-TTCCACTGAATATTT-TACCTTGGACGT---TAAAAGAAATGATGAGGAAATTAAATCC-CTTGGACTC  582

Query  583  GTATTACGGAAACTTTTAGACAGAGAAGAAACTCCGGAGCTTCATTTATTGCTCACGGCCACCGATGGAGGCAA  656
            ||.||....|||..||||.|..||||.||.|||||..|||.|.|||||.|..|.||.||.|..|||||.||.||
Sbjct  583  GTGTTGAAAAAAAATTTAAATCGAGAGGACACTCCTAAGCATTATTTACTAATAACAGCAATTGATGGTGGGAA  656

Query  657  ACCCGAGCTGACTGGCACCGTTCAATTACTCATCACGGTACTGGACAACAATGACAATGCCCCAGTGTTCGACA  730
            |||.|||||.||||||||...||||.||...|||||.||..|.||....||.|||||.|||||||.|||.||.|
Sbjct  657  ACCAGAGCTCACTGGCACGACTCAACTAAAGATCACTGTTTTAGATGTAAACGACAACGCCCCAGCGTTTGAGA  730

Query  731  GAACCCTGTATACGGTGAAATTACCAGAAAACGTTTCTATCGGAACGC---TGGTGATTCACCCC---AATGCC  798
            |.||..|.||||..||.|.|||||..|||||.|...|.|..||.||.|   ||||||      ||   ||.|||
Sbjct  731  GGACGATCTATAAAGTCAGATTACTCGAAAATGCACCAAATGGTACCCTAGTGGTGA------CCGTTAACGCC  798

Query  799  TCAGATTTAGACGAAGGCTTGAATGGGGATAT----TATTTACTCCTTC--TCCAGTGATGTTTCTCCAGATAT  866
            .|.|||||.||.|||||..|.|||..||||||    |||    ||.|||  |.|.|..|||  ||..|||||||
Sbjct  799  ACCGATTTGGATGAAGGAGTAAATAAGGATATCGCGTAT----TCTTTCAATACGGACATG--TCAGCAGATAT  866

Query  867  -------AAAATCCA---AGTTCCA---CATGGACCCCTTAAGTGGGGCAATCACAGTG-ATAGG---ACATAT  923
                   |||.||||   ||.||||   .||||||     ||.|          ||||| |.|||   ||||| 
Sbjct  867  TCTGTCAAAATTCCATTTAGATCCAGTCAATGGAC-----AAAT----------CAGTGTAAAGGGTAACATA-  924

Query  924  GGATTTTGAAGAAAGTAGAG-CACACAAGATCCCAGTCGAGGCTGTCGATAAAGG-CTTCCCACCCCTGGCTGG  995
             |||||.||.||||||| || ||.|..|.||||..||.||.||....|||||||| ..|||| ||..||.|.|.
Sbjct  925  -GATTTCGAGGAAAGTA-AGTCATATGAAATCCAGGTAGAAGCCACGGATAAAGGAAATCCC-CCAATGTCAGA  995

Query  996  TCATTGTACACTTCTTGTGGAAGTTGTGGATGTAAATGACAATGCTCCACAGTTGACTATCAAAACGCTCTCGG  1069
            |||.||.|||.||||..|.|||.|||||||..|.|||||.||||..||..||||...|||..||.|.||.||..
Sbjct  996  TCACTGCACAGTTCTACTCGAAATTGTGGACATCAATGATAATGTACCTGAGTTAGTTATTCAATCACTATCTT  1069

Query 1070  TTCCTGTAAAAGAGGACGCACAACTGGGGACAGTTATTGCCCTGATTAGTGTGATCGACCTAGACGCAGATGCC  1143
            |.||||||..|||.|||.|.|.|||..|.|||||.||.||.|||||.||.|||..|||||..|||.|||..|.|
Sbjct 1070  TACCTGTATTAGAAGACTCTCCACTTAGCACAGTCATCGCTCTGATCAGCGTGTCCGACCGCGACTCAGGAGTC  1143

Query 1144  AACGGGCAGGTTACCTGCTCCCTGACGCCCCACGTCCCCTTCAAGCTGGTGTCCACCTACAAGAATTACTACTC  1217
            ||.||.|||||.||||||||.|||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 1144  AATGGACAGGTCACCTGCTCGCTGACGCCCCACGTCCCCTTCAAGCTGGTGTCCACCTTCAAGAATTACTACTC  1217

Query 1218  GTTGGTGCTGGACAGAGCTCTGGACCGCGAGAGTGTGTCCGCCTACGAGCTGGTGGTTACCGCGCGGGACGGGG  1291
            .||||||||||||||..||||||||||||||||.|||||.|||||.|||||||||||.||.||.||||||||||
Sbjct 1218  ATTGGTGCTGGACAGCCCTCTGGACCGCGAGAGCGTGTCGGCCTATGAGCTGGTGGTGACTGCTCGGGACGGGG  1291

Query 1292  GCTCGCCTTCACTGTGGGCCACGGCCAGGGTGTCTGTGGAGGTGGCCGACGTGAACGACAACGCACCAGCGTTC  1365
            ||||||||||||||||||||||||||||.|||||.||||||||||||||||||||||||||.||.||.||.|||
Sbjct 1292  GCTCGCCTTCACTGTGGGCCACGGCCAGCGTGTCCGTGGAGGTGGCCGACGTGAACGACAATGCGCCGGCATTC  1365

Query 1366  GCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCACGGTGTCTGCGCG  1439
            .|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366  TCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCACGGTGTCTGCGCG  1439

Query 1440  GGACGCTGACGCGCAGGAGAACGCCCTGGTGTCCTACTCGCTGGTGGAGCGGCGGTTGGGCGAGCGCTCGCTGT  1513
            ||||||.|||||||||||||||||||||||||||||||||||||||||.||||||.||||.||||||.||||||
Sbjct 1440  GGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCGCTGGTGGAACGGCGGGTGGGGGAGCGCGCGCTGT  1513

Query 1514  CGAGCTACGTGTCAGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGTTGGACCACGAGGAGCTGGAG  1587
            |||||||||||||.||.||||||||||||||||||||||||||||||||||||.||||||||||||||||.|||
Sbjct 1514  CGAGCTACGTGTCGGTACACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAGGAGCTAGAG  1587

Query 1588  CTGCTACAGTTCCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGTT  1661
            |||||.||||||||||||||.||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588  CTGCTGCAGTTCCAGGTGAGTGCGCGCGATGCGGGCGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGTT  1661

Query 1662  CGTGCTGGACGAGAACGACAATGCGCCGGCGCTGCTGACACCTCGGATGAGGGGCACTGACGGCGCAGTGAGCG  1735
            |||||||||||||||||||||.||||||||.|||||||..||||||.||.|.||||..|..|||||||||||||
Sbjct 1662  CGTGCTGGACGAGAACGACAACGCGCCGGCACTGCTGATGCCTCGGGTGGGTGGCATCGGTGGCGCAGTGAGCG  1735

Query 1736  AGATGGTGCTGCGGTCGGTGGGCGCCGGCGTAGTGGTGGGGAAGGTGCGCGCAGTGGACGCCGACTCGGGCTAC  1809
            ||.||||||.||||||.|||||.||.|||...|||||.|.||||||||||||||||||.||.|||||.||||||
Sbjct 1736  AGCTGGTGCCGCGGTCAGTGGGTGCGGGCCACGTGGTAGCGAAGGTGCGCGCAGTGGATGCAGACTCAGGCTAC  1809

Query 1810  AACGCGTGGCTTTCATACGAGCTGCAGCCAGAAACGGCCAGCGCGAGCATCCCGTTCCGCGTGGGGCTGTACAC  1883
            ||||||||||||||.||.|||||||||||.|..||.|.|.|.|||.||||||||||.|||||||||||||||||
Sbjct 1810  AACGCGTGGCTTTCGTATGAGCTGCAGCCTGGGACCGGCGGTGCGCGCATCCCGTTTCGCGTGGGGCTGTACAC  1883

Query 1884  GGGCGAGATCAGCACAACGCGTGCCCTGGACGAAACGGACGCACCGCGCCAGCGCCTACTGGTGCTGGTGAAAG  1957
            |||.|||||||||||.||.||||||||||||||...||||||.||||||||.||||||||||||||||||||.|
Sbjct 1884  GGGAGAGATCAGCACGACCCGTGCCCTGGACGAGGTGGACGCCCCGCGCCATCGCCTACTGGTGCTGGTGAAGG  1957

Query 1958  ACCACGGGGAGCCAGCGCTGACGGCCACGGCCACTGTGCTGGTGTCGCTGGTGGAGAGCGGCCAGGCGCCAAAG  2031
            |||||||.||.||..|..||||.|||||||||||||||||||||||||||||||||||.||||||||.||.|||
Sbjct 1958  ACCACGGTGAACCCTCATTGACCGCCACGGCCACTGTGCTGGTGTCGCTGGTGGAGAGTGGCCAGGCACCCAAG  2031

Query 2032  TCATCGTCGCGGGCGTCAGTGGGTGCCACGGGCCCCG-AGGTGACGCTGGTGGATGTCAACGTGTACCTGATCA  2104
            .|.|||||.|.||||||.|..||.|||||||||||.| ||.|| |.|||||||||||||||||||||.|||||.
Sbjct 2032  GCCTCGTCCCAGGCGTCCGCTGGCGCCACGGGCCCGGAAGCTG-CACTGGTGGATGTCAACGTGTACTTGATCG  2104

Query 2105  TCGCCATCTGCGCGGTGTCTAGCCTGTTGGTTCTCACGCTGCTGCTGTACACTGTGCTGCGGTGCTCGGCGATG  2178
            |||||||||||||||||||.||.||||||||.|||||.||||||||.||.||||..|||||||||||.|||..|
Sbjct 2105  TCGCCATCTGCGCGGTGTCCAGTCTGTTGGTGCTCACACTGCTGCTATATACTGCTCTGCGGTGCTCCGCGCCG  2178

Query 2179  CCCACCGAGGGCGAGTGCGCGCCTGGCAAGCCGACGCTGGTGTGTTCTAGCGCGGTGGGGAGTTGGTCGTACTC  2252
            ||.|||||.|||||.||.|.|||.||||||||.|||||||||||.||.||||||||||||||.|||||.|||||
Sbjct 2179  CCAACCGAAGGCGACTGTGGGCCGGGCAAGCCCACGCTGGTGTGCTCCAGCGCGGTGGGGAGCTGGTCATACTC  2252

Query 2253  GCAGCAGAGGAGGCAGAGGGTGTGCTCTGGCGAGGGTAAGCAGAAGACCGACCTCATGGCCTTCAGCCCGGGCC  2326
            ||||||||||..||||||||||||||||||.|||||...||..|||||||||||||||||.||.|||||..|||
Sbjct 2253  GCAGCAGAGGCAGCAGAGGGTGTGCTCTGGAGAGGGGTTGCCCAAGACCGACCTCATGGCTTTTAGCCCTAGCC  2326

Query 2327  TTTCTCCTTGT--------GCTGGATCTACAGAGCG----AACGGGA----------GAACCCTCTGCTTCCTC  2378
            ||.||||||||        .|.||||    ||||.|    |||.|||          ||.|.|||.||      
Sbjct 2327  TTCCTCCTTGTCCAATTAGCCGGGAT----AGAGAGGAGAAACAGGATGTGGACGTTGATCTCTCAGC------  2390

Query 2379  AGATTCAACTGGGAAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACA  2452
                        .||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2391  ------------CAAACCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACA  2452

Query 2453  GCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTA  2526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2453  GCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTA  2526

Query 2527  TCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTG  2600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2527  TCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTG  2600

Query 2601  GACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAG  2674
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2601  GACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAG  2674

Query 2675  GATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTC  2748
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2675  GATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTC  2748

Query 2749  GGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGG  2822
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2749  GGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGG  2822

Query 2823  GAACAGCACGACTGACAACAGTGACCAG  2850
            ||||||||||||||||||||||||||||
Sbjct 2823  GAACAGCACGACTGACAACAGTGACCAG  2850

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