Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02234
Subject:
NM_018911.3
Aligned Length:
2948
Identities:
2410
Gaps:
196

Alignment

Query    1  ATG--TTAT-ACTCAAGTCGAGGAGATCCAGAGGGTCAGCCT-----CTACTGCTCTCGCTTCTGATCCTCGCA  66
            |||  |||| |||   |.||||||||.|   .|||  |.|||     |||||.||||.|||||||.||||||||
Sbjct    1  ATGGATTATCACT---GGCGAGGAGAGC---TGGG--ATCCTGGCGACTACTACTCTTGCTTCTGCTCCTCGCA  66

Query   67  ATGTGGGTGGTGGGGAGCGGCCAGCTCCACTACTCCGTCCCGGAGGAAGCCGAACACGGCACCTTCGTGGGCCG  140
            ...|||..|||||||||||||||||||||||||||||||||.|||||.|||.||||||||||||||||||||||
Sbjct   67  GCCTGGAAGGTGGGGAGCGGCCAGCTCCACTACTCCGTCCCCGAGGAGGCCAAACACGGCACCTTCGTGGGCCG  140

Query  141  CATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCAGTTGGATTCCAAAGGCCGCG  214
            .||||||||||||||||||||||||||||||||||||||||||||||||||||.|.|||..||||||.|.|.|.
Sbjct  141  GATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCGGGTGGCGTCCAAAAGACACC  214

Query  215  GGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGC  288
            ||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  215  GGGACCTTCTGGAGGTAAGTCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGC  288

Query  289  GGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTAGACAGGCCGCTGCAGGTTTTCCATGTGGACGT  362
            |||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct  289  GGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGT  362

Query  363  GGAGGTGAAGGACATTAACGACAACCCTCCAGTGTTCC----CAGCGACACAAAAGAATCTGTTCATCGCGGAA  432
            ||||||||||||..||||.||||||||.||||||||||    .|..||| ||||||   |||||..|..|.|||
Sbjct  363  GGAGGTGAAGGATGTTAATGACAACCCGCCAGTGTTCCGGGTAAAAGAC-CAAAAG---CTGTTTGTTTCAGAA  432

Query  433  TCCAGGCCGCTTGACTCTCGGTTTCCACTAGAGGGCGCGTCCGATGCAGATATCGGGGAGAACGCCCTGCTCAC  506
            |||||...||..||||||||||||||.||||||||||||||||||||||||.|.||.|..|||.||.||.|.||
Sbjct  433  TCCAGAATGCCAGACTCTCGGTTTCCGCTAGAGGGCGCGTCCGATGCAGATGTTGGAGCTAACTCCGTGTTAAC  506

Query  507  TTACAGACTGAGCCCCAATGAGTATTTCTTCCTGGACGTG---CCAACCAGCAACCAGCAGGTAAAACCTCTTG  577
            .|||||.||.|||.|..||||.||.|||.|.||.||.|||   .|||  || |||.|..||...||||...|||
Sbjct  507  CTACAGGCTTAGCTCTCATGATTACTTCATGCTAGATGTGAATTCAA--AG-AACGATGAGAATAAACTGGTTG  577

Query  578  GACTTGTATTACGGAAACTTTTAGACAGAGAAGAAACTCCGGAGCTTCATTTATTGCTCACGGCCACCGATGGA  651
            ..||.||||||.|.|||...||.||||||||.||..||||.|.||..||.|||||.||.||.|||||.|||||.
Sbjct  578  AGCTCGTATTAAGAAAATCCTTGGACAGAGAGGACGCTCCTGCGCACCACTTATTCCTGACAGCCACAGATGGG  651

Query  652  GGCAAACCCGAGCTGACTGGCACCGTTCAATTACTCATCACGGTACTGGACAACAATGACAATGC-CCCAGTGT  724
            ||||||||.|||||.||.|||||.|||||..|.||..||||.||.|||||....|||||.||||| ||||.| |
Sbjct  652  GGCAAACCTGAGCTCACAGGCACTGTTCAGCTGCTGGTCACAGTGCTGGATGTGAATGATAATGCTCCCACT-T  724

Query  725  TCG-ACAGAACCCTGTATACG--GTGAAATTACCAGAAAACGTTTCTATCGGAACGCTGGTGATTCACCCCAAT  795
            ||| ||||   .|||.|||||  ||.|.|.||...|||||||.....|.||||||....||.||..|.|..|||
Sbjct  725  TCGAACAG---TCTGAATACGAAGTAAGAATATTCGAAAACGCAGACAACGGAACAACAGTTATCAAACTGAAT  795

Query  796  GCCTCAGATTTAGACGAAGGCTTGAATGGGG-------ATATT-ATTTACT--CCTTCTCCAGTGATGTTTCTC  859
            ||.||.|||...||.|||||....|||||||       ||||| .||||.|  ||||.|    |||        
Sbjct  796  GCTTCTGATCCGGATGAAGGAGCCAATGGGGCAATTTCATATTCTTTTAATAGCCTTGT----TGA--------  857

Query  860  CAGATATAAAATCCAAGTTCCACATGGACCCCTTAAG---------------TGGGGCAATCACAGTGAT---A  915
             |..|||        .|||    ||.||||.|||.||               .||.|.|||   ||||||   .
Sbjct  858  -AACTAT--------GGTT----ATTGACCACTTTAGCATAGATCGAAATACGGGAGAAAT---AGTGATTCGG  915

Query  916  GGACATATGGATTTTGAAGAAAGTAGAGCAC----ACAAGATCC-CAGTCGAGGCTGTCGATAAAGGCTTCCCA  984
            ||..||.|||||||||||.|    |||..||    ||||.|||| || |.||.||....||.||||||...||.
Sbjct  916  GGTAATTTGGATTTTGAACA----AGAAAACTTATACAAAATCCTCA-TTGACGCCACGGACAAAGGCCATCCT  984

Query  985  CCCCTGGCTGGTCATTGTACACTTCTTGTG-GAAGTTGTGGATGTAAATGACAATGCTCC-----ACAG--TTG  1050
            |||.||||.||||||||.||..||.|.||| ||| ||.|||||..||||||.||.| |||     |.||  .||
Sbjct  985  CCCATGGCGGGTCATTGCACCGTTTTAGTGAGAA-TTTTGGATAAAAATGATAACG-TCCCTGAGATAGCACTG  1056

Query 1051  AC-----TATCAAAACGCTCTCGGTTCCTGTAAAAGAGGACGCACAACTGGGGACAGTTATTGCCCTGATTAGT  1119
            ||     ||||      ||     |.||||||...||.|||||.|||.|.||.||.||.||.|||||.|||||.
Sbjct 1057  ACTTCCTTATC------CT-----TGCCTGTACGTGAAGACGCTCAATTTGGTACTGTCATCGCCCTAATTAGC  1119

Query 1120  GTGATCGACCTAGACGCAGATGCCAACGGGCAGGTTACCTGCTCCCTGACGCCCCACGTCCCCTTCAAGCTGGT  1193
            ||||.||||||.||..|||.|||||||||||||||.|||||||||||||.||||||.|||||||||||||||||
Sbjct 1120  GTGAACGACCTCGATTCAGGTGCCAACGGGCAGGTGACCTGCTCCCTGATGCCCCATGTCCCCTTCAAGCTGGT  1193

Query 1194  GTCCACCTACAAGAATTACTACTCGTTGGTGCTGGACAGAGCTCTGGACCGCGAGAGTGTGTCCGCCTACGAGC  1267
            ||||||||.||||||||||||||||||||||||||||||.||.||||||||||||||.|||||.|||||.|||.
Sbjct 1194  GTCCACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGCGCCCTGGACCGCGAGAGAGTGTCGGCCTATGAGT  1267

Query 1268  TGGTGGTTACCGCGCGGGACGGGGGCTCGCCTTCACTGTGGGCCACGGCCAGGGTGTCTGTGGAGGTGGCCGAC  1341
            |||||||.||||||||||||||||||||||||||.|||||||||||.|||||..||||||||||||||||||||
Sbjct 1268  TGGTGGTAACCGCGCGGGACGGGGGCTCGCCTTCGCTGTGGGCCACCGCCAGCTTGTCTGTGGAGGTGGCCGAC  1341

Query 1342  GTGAACGACAACGCACCAGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCGGGCTG  1415
            |||||||||||.||.||.||||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342  GTGAACGACAATGCTCCGGCGTTCGCGCAGCCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCGGGCTG  1415

Query 1416  CCACATCTTCACGGTGTCTGCGCGGGACGCTGACGCGCAGGAGAACGCCCTGGTGTCCTACTCGCTGGTGGAGC  1489
            ||||||||||||||||||||||||.|||||.|||||||||||||||||.|||||||||||||||||.|||||||
Sbjct 1416  CCACATCTTCACGGTGTCTGCGCGAGACGCGGACGCGCAGGAGAACGCGCTGGTGTCCTACTCGCTTGTGGAGC  1489

Query 1490  GGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCAGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAG  1563
            |||||.||||||||||||||||||||||||||.|.||.||||||.|||||||||||||||||||||||||||||
Sbjct 1490  GGCGGGTGGGCGAGCGCTCGCTGTCGAGCTACATTTCGGTGCACACGGAGAGCGGCAAGGTGTACGCGCTGCAG  1563

Query 1564  CCGTTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCTCTGGG  1637
            |||.||||||||||||||||.||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564  CCGCTGGACCACGAGGAGCTAGAGCTGCTGCAGTTCCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCTCTGGG  1637

Query 1638  CAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAATGCGCCGGCGCTGCTGACACCTCGGATGA  1711
            |||||||||||||||||||||||||||||||||||||||.|||||.||||||||.||||||...||||||.||.
Sbjct 1638  CAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAATGACAACGCGCCGGCACTGCTGGAGCCTCGGGTGG  1711

Query 1712  GGGGCACTGACGGCGCAGTGAGCGAGATGGTGCTGCGGTCGGTGGGCGCCGGCGTAGTGGTGGGGAAGGTGCGC  1785
            |.|||||||..|||||||.||||.||.||||||.||||||.||||||||.|||...|||||.|.||||||||||
Sbjct 1712  GTGGCACTGGTGGCGCAGCGAGCAAGCTGGTGCCGCGGTCTGTGGGCGCGGGCCACGTGGTAGCGAAGGTGCGC  1785

Query 1786  GCAGTGGACGCCGACTCGGGCTACAACGCGTGGCTTTCATACGAGCTGCAGCCAGAAACGGC---CAGCGCGAG  1856
            ||||||||||||||||||||||||||||||||||||||.||.|||||||||||||   |.||   ||||.|..|
Sbjct 1786  GCAGTGGACGCCGACTCGGGCTACAACGCGTGGCTTTCGTATGAGCTGCAGCCAG---CTGCAAGCAGCCCTCG  1856

Query 1857  CATCCCGTTCCGCGTGGGGCTGTACACGGGCGAGATCAGCACAACGCGTGCCCTGGACGAAACGGACGCACCGC  1930
            ||||||||||||||||||||||||||||||||||||||||||.||.||||.||||||||||.|||||.|.||||
Sbjct 1857  CATCCCGTTCCGCGTGGGGCTGTACACGGGCGAGATCAGCACCACTCGTGTCCTGGACGAAGCGGACTCTCCGC  1930

Query 1931  GCCAGCGCCTACTGGTGCTGGTGAAAGACCACGGGGAGCCAGCGCTGACGGCCACGGCCACTGTGCTGGTGTCG  2004
            ||||.||.||.|||||.||||||||.||.||.||.||.||.||||||||.|||||||||||.||.|||||||||
Sbjct 1931  GCCACCGTCTGCTGGTCCTGGTGAAGGATCATGGTGAACCTGCGCTGACCGCCACGGCCACGGTTCTGGTGTCG  2004

Query 2005  CTGGTGGAGAGCGGCCAGGCGCCAAA---GTCATC------GTC-GCGGGCGTCAGTGGGTGCCACGGGCCCCG  2068
            ||||||||||||||||||||.|||||   ||||||      ||| ||.||||| ..|||||         ||.|
Sbjct 2005  CTGGTGGAGAGCGGCCAGGCTCCAAAAGCGTCATCGAGGCAGTCGGCTGGCGT-TTTGGGT---------CCGG  2068

Query 2069  AGGTGACGCTGGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTGTCTAGCCTGTTGGTTCTCACG  2142
            |.|.|.||||||||||||||||||||||||||||||||||||||||||||||.||.||||||.||||.||||||
Sbjct 2069  AAGCGGCGCTGGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTATCCAGCCTGCTGGTGCTCACG  2142

Query 2143  CTGCTGCTGTACACTGTGCTGCGGTGCTCGGCGATGCCCACCGAGGGCGAGTGCGCGCCTGGCAAGCCGACGCT  2216
            ||||||||||||||||.||||||||||||.||..|||||||.|||||||.||||..|.|.||||||||.||.||
Sbjct 2143  CTGCTGCTGTACACTGCGCTGCGGTGCTCAGCACTGCCCACTGAGGGCGGGTGCCGGGCGGGCAAGCCCACTCT  2216

Query 2217  GGTGTGTTCTAGCGCGGTGGGGAGTTGGTCGTACTCGCAGCAGAGGAGGCAGAGGGTGTGCTCTGGCGAGGGTA  2290
            ||||||.||.||.|||||||||||.|||||.||||||||.||...|..||||||||||||||||||.|||||..
Sbjct 2217  GGTGTGCTCCAGTGCGGTGGGGAGCTGGTCATACTCGCAACAACAGCCGCAGAGGGTGTGCTCTGGTGAGGGGC  2290

Query 2291  AGCAGAAGACCGACCTCATGGCCTTCAGCCCGGGCCTTTCTCCT--TGTGCTGGATC------TACAGAGCGAA  2356
            ..|.||||||.||||||||||||||||||||..|||||.|||||  |.||  |||||      |..|| |||||
Sbjct 2291  CACCGAAGACGGACCTCATGGCCTTCAGCCCCTGCCTTCCTCCTGATCTG--GGATCAGTTGATGTAG-GCGAA  2361

Query 2357  CGGGAGAACCCTCTGCTTCCTCAGATTCAACTG--------GG----AAGCCACGACAGCCCAACCCTGACTGG  2418
               |||.|              |||||.||.||        ||    ||.||||||||||||||||||||||||
Sbjct 2362  ---GAGCA--------------AGATTTAAATGTTGATCATGGCCTCAAACCACGACAGCCCAACCCTGACTGG  2418

Query 2419  CGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGG  2492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2419  CGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGG  2492

Query 2493  TCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCC  2566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2493  TCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCC  2566

Query 2567  CTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGT  2640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2567  CTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGT  2640

Query 2641  CCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAA  2714
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2641  CCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAA  2714

Query 2715  CAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGA  2788
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2715  CAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGA  2788

Query 2789  AGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG  2850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2789  AGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG  2850

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.