Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02234
Subject:
NM_031500.3
Aligned Length:
2887
Identities:
2041
Gaps:
530

Alignment

Query    1  AT---GTTATACT---CAAGTCG---AGGAGATCCAGAGGGTCAGCCTCTACTGCTCTCGCTTCTGATCCTCGC  65
            ||   |||.|.||   .||| ||   |||| ||||       |.||.|||.|||||||..|||||..|||||||
Sbjct    1  ATGGAGTTTTCCTGGGGAAG-CGGCCAGGA-ATCC-------CGGCGTCTGCTGCTCTTACTTCTTCTCCTCGC  65

Query   66  AATGTGGGTGGTGGGGAGCGGCCAGCTCCACTACTCCGTCCCGGAGGAAGCCGAACACGGCACCTTCGTGGGCC  139
            |...||||.||..||||.|||.||||||||||||||.|||.|.|||||.|||.|||||||||||||||||||||
Sbjct   66  AGCCTGGGAGGCAGGGAACGGTCAGCTCCACTACTCGGTCTCCGAGGAGGCCAAACACGGCACCTTCGTGGGCC  139

Query  140  GCATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCAGTTGGATTCCAAAGGCCGC  213
            |||||||||||||||||||.||||||||||||||||||||||||||||||||||.|.|||..|||||.||||||
Sbjct  140  GCATCGCGCAGGACCTGGGACTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCGGGTGGCGTCCAAGGGCCGC  213

Query  214  GGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTG  287
            ||.|.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct  214  GGAGGCCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGGGAGGAGCTGTG  287

Query  288  CGGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTAGACAGGCCGCTGCAGGTTTTCCATGTGGACG  361
            |.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  288  CCGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTAGACAGGCCGCTGCAGGTTTTCCATGTGGACG  361

Query  362  TGGAGGTGAAGGACATTAACGACAACCCTCCAGTGTTCCCAGCGACACAAAAGAATCTGTTCATCGCGGAATCC  435
            |||||||||.||||||||||||.|||||.||.|||||||||||.|||||||||||.||||.|||||||||||||
Sbjct  362  TGGAGGTGAGGGACATTAACGATAACCCGCCGGTGTTCCCAGCAACACAAAAGAACCTGTCCATCGCGGAATCC  435

Query  436  AGGCCGCTTGACTCTCGGTTTCCACTAGAGGGCGCGTCCGATGCAGATATCGGGGAGAACGCCCTGCTCACTTA  509
            |||||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||||||||||||||
Sbjct  436  AGGCCGCTTGACTCTCGGTTTCCACTAGAGGGCGCCTCGGATGCAGATATCGGGGAGAACGCCCTGCTCACTTA  509

Query  510  CAGACTGAGCCCCAATGAGTA--TTTCTTCCTGGACGTGCCAACCAGC----AACCAGCAGGTAAAACCTCTTG  577
            ||||||||||||.|||||.||  |||||  |||||    ..|||||.|    .||.|||.|||||||..|||||
Sbjct  510  CAGACTGAGCCCAAATGAATACTTTTCT--CTGGA----AAAACCACCTGATGACGAGCTGGTAAAAGGTCTTG  577

Query  578  GACTTGTATTACGGAAACTTTTAGACAGAGAAGAAACTCCGGAGCTTCATTTATTGCTCACGGCCACCGATGGA  651
            |.|||.|||||||||||..||||||||||||||||.||||||||.||..||||.|||||||.|||||.||||||
Sbjct  578  GGCTTATATTACGGAAATCTTTAGACAGAGAAGAAGCTCCGGAGATTTTTTTAGTGCTCACAGCCACTGATGGA  651

Query  652  GGCAAACCCGAGCTGACTGGCACCGTTCAATTACTCATCACGGTACTGGACAACAATGACAATGCCCCAGTGTT  725
            ||||||||||||.||||||||||||||||.|||||||||||.||||||||...|||||||||||||||||..||
Sbjct  652  GGCAAACCCGAGTTGACTGGCACCGTTCAGTTACTCATCACAGTACTGGATGCCAATGACAATGCCCCAGCTTT  725

Query  726  CGACAGAACCCTGTATACGGTGAAATTACCAGAAAACGTTTCTATCGGAACGCTGGTGATTCACCCCAATGCCT  799
            .|||||||||.|.||||.|||||.|||||.||||||.|||.|||..|||||..||||.|||.|.|..||.||||
Sbjct  726  TGACAGAACCATTTATAAGGTGAGATTACTAGAAAATGTTCCTAATGGAACATTGGTAATTAAACTTAACGCCT  799

Query  800  CAGATTTAGACGAAGGCTTGAATGGGGATATTATTTACTCCTTCTCCAGTGATGTTTCTCCAGATATAAAATCC  873
            ||||||||||||||||.|||||||||||.|||.||||.||.|||||.|.||||.||||.|||.||.|.||||||
Sbjct  800  CAGATTTAGACGAAGGATTGAATGGGGACATTGTTTATTCATTCTCAAATGATATTTCGCCAAATGTGAAATCC  873

Query  874  AAGTTCCACATGGACCCCTTAAGTGGGGCAATCACAGTGATAGGACATATGGATTTTGAAGAAAGTAGAGCACA  947
            |||||.|||||.||.||..|.|.|||...|||.|..||.|..|||.||||.||.|||||||||||         
Sbjct  874  AAGTTTCACATAGATCCAATTACTGGACAAATTATTGTAAAGGGATATATTGACTTTGAAGAAAG---------  938

Query  948  CAAGATCCCA----------GTCGAGGCTGTCGATAAAG----GCTTCCCACCCCTGGCTGGTCATTGTACACT  1007
            ||| ||||.|          ||.||||...|.|||||.|    || |||||   ||..||||.|||||||.|.|
Sbjct  939  CAA-ATCCTATGAAATTATTGTAGAGGGCATTGATAAGGGACAGC-TCCCA---CTTTCTGGCCATTGTAGAGT  1007

Query 1008  TCTTGTGGAAGTTGTGGATGTAAATGACAATGCTCCACAGTT-GACTATCAAAACGCTCTCGGTTCCTGTAAAA  1080
            |.||||||||||.|..||....||.||.||||..|||.|.|| ||.| ||||..|..|.||..||||..|.|.|
Sbjct 1008  TATTGTGGAAGTAGAAGACAACAACGATAATGTCCCAGATTTGGAAT-TCAAGTCTTTATCACTTCCAATTAGA  1080

Query 1081  GAGGACGCACAACTGGGGACAGTTATTGCCCTGATTAGTGTGATCGACCTAGACGCAGATGCCAACGGGCAGGT  1154
            ||||||||.|.||||||.|||||.||.||||||||.||.|||..||||..||||...|.||.|||.||||.|||
Sbjct 1081  GAGGACGCTCCACTGGGTACAGTCATCGCCCTGATCAGCGTGTCCGACAAAGACATGGGTGTCAATGGGCTGGT  1154

Query 1155  TACCTGCTCCCTGACGCCCCACGTCCCCTTCAAGCTGGTGTCCACCTACAAGAATTACTACTCGTTGGTGCTGG  1228
            .|||||||||.|||||.||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 1155  CACCTGCTCCTTGACGTCCCACGTCCCCTTCAAGCTGGTGTCCACCTTCAAGAATTACTACTCGTTGGTGCTGG  1228

Query 1229  ACAGAGCTCTGGACCGCGAGAGTGTGTCCGCCTACGAGCTGGTGGTTACCGCGCGGGACGGGGGCTCGCCTTCA  1302
            ||||.||.||||||||||||||.|||||.|||||.|||||||||||.||||||||.|||||||||||||||||.
Sbjct 1229  ACAGTGCCCTGGACCGCGAGAGCGTGTCAGCCTATGAGCTGGTGGTGACCGCGCGAGACGGGGGCTCGCCTTCG  1302

Query 1303  CTGTGGGCCACGGCCAGGGTGTCTGTGGAGGTGGCCGACGTGAACGACAACGCACCAGCGTTCGCGCAGTCCGA  1376
            |||||||||||||||||.||.||||||||||||||.||.||||||||||||||.||.||||||||||||.||||
Sbjct 1303  CTGTGGGCCACGGCCAGTGTTTCTGTGGAGGTGGCTGATGTGAACGACAACGCTCCGGCGTTCGCGCAGCCCGA  1376

Query 1377  GTACACGGTGTTCGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCACGGTGTCTGCGCGGGACGCTGACG  1450
            ||||||.||||||||||||||||||||||||||||||||||||||||||||.|||||||||.|||||||.||||
Sbjct 1377  GTACACAGTGTTCGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCACTGTGTCTGCGTGGGACGCGGACG  1450

Query 1451  CGCAGGAGAACGCCCTGGTGTCCTACTCGCTGGTGGAGCGGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTG  1524
            |||||||||||||.||||||||||||||||||||.|||||||||.|.||.||||||.||||||||||||||||.
Sbjct 1451  CGCAGGAGAACGCGCTGGTGTCCTACTCGCTGGTAGAGCGGCGGGTAGGGGAGCGCGCGCTGTCGAGCTACGTT  1524

Query 1525  TCAGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGTTGGACCACGAGGAGCTGGAGCTGCTACAGTT  1598
            ||.|||||.|||||||||||||||||||||||||||||||||.||||||||||||||||.||||||||.|||||
Sbjct 1525  TCGGTGCATGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAGGAGCTAGAGCTGCTGCAGTT  1598

Query 1599  CCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACG  1672
            .|||||||.|||.|||||.||.||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599  TCAGGTGACCGCTCGCGATGCCGGCGTGCCACCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACG  1672

Query 1673  AGAACGACAATGCGCCGGCGCTGCTGACACCTCGGATGAGGGGCACTGACGGCGCAGTGAGCGAGATGGTGCTG  1746
            |.||||||||.|||||.||.|||||..|.||||||..|.|.|||||||..|||||||||||||||.||||||..
Sbjct 1673  AAAACGACAACGCGCCAGCACTGCTAGCGCCTCGGGCGGGTGGCACTGGTGGCGCAGTGAGCGAGCTGGTGCCA  1746

Query 1747  CGGTCGGTGGGCGCCGGCGTAGTGGTGGGGAAGGTGCGCGCAGTGGACGCCGACTCGGGCTACAACGCGTGGCT  1820
            .||||||||||.|..|||...|||||||..|||||||||||.|||||.||.|||||||||||||||||||||||
Sbjct 1747  TGGTCGGTGGGTGTGGGCCACGTGGTGGCAAAGGTGCGCGCGGTGGATGCTGACTCGGGCTACAACGCGTGGCT  1820

Query 1821  TTCATACGAGCTGCAGCCAGAAACGGCCAGCGCGAGCATCCCGTTCCGCGTGGGGCTGTACACGGGCGAGATCA  1894
            |||.||||||||||||||.|..||.|...|||||.||||||||||||||||||||||||||||.||||||||||
Sbjct 1821  TTCGTACGAGCTGCAGCCGGGGACTGGTGGCGCGCGCATCCCGTTCCGCGTGGGGCTGTACACTGGCGAGATCA  1894

Query 1895  GCACAACGCGTGCCCTGGACGAAACGGACGCACCGCGCCAGCGCCTACTGGTGCTGGTGAAAGACCACGGGGAG  1968
            |||||||||||||||||||||||||||||||.||||||||.|||||||||||.||||||||.||||||||.|||
Sbjct 1895  GCACAACGCGTGCCCTGGACGAAACGGACGCTCCGCGCCACCGCCTACTGGTACTGGTGAAGGACCACGGCGAG  1968

Query 1969  CCAGCGCTGACGGCCACGGCCACTGTGCTGGTGTCGCTGGTGGAGAGCGGCCAGGCGCCAAAGTCATCGTCGCG  2042
            ||.||||||||||||||||||||||||||||||||.||.||||||||.||.||||||||||||.|.||.||.||
Sbjct 1969  CCCGCGCTGACGGCCACGGCCACTGTGCTGGTGTCACTTGTGGAGAGTGGACAGGCGCCAAAGGCCTCCTCACG  2042

Query 2043  GGCGTCAGTGGGTGCCACGGGCCCCGA-GGTGACGCTGGTGGATGTCAACGTGTACCTGATCATCGCCATCTGC  2115
            |||||..|||||.||...|||.||||| |.|| |||||||||||||||||||.|||||||||||.|||||||||
Sbjct 2043  GGCGTTGGTGGGCGCTGTGGGTCCCGATGCTG-CGCTGGTGGATGTCAACGTATACCTGATCATTGCCATCTGC  2115

Query 2116  GCGGTGTCTAGCCTGTTGGTTCTCACGCTGCTGCTGTACACTGTGCTGCGGTGCTCGGCGATGCCCACCGAGGG  2189
            ||||||||.|||||.|||||.||||||||||||||||||||.|.||||||||||||.|||.|||||||||||||
Sbjct 2116  GCGGTGTCCAGCCTTTTGGTGCTCACGCTGCTGCTGTACACCGCGCTGCGGTGCTCTGCGCTGCCCACCGAGGG  2189

Query 2190  CGAGTGCGCGCCTGGCAAGCCGACGCTGGTGTGTTCTAGCGCGGTGGGGAGTTGGTCGTACTCGCAGCAGAGGA  2263
            ||.||||||.||.||||||||.|||||||||||.||.||.|||||||||||.|||||.||||||||||||||||
Sbjct 2190  CGCGTGCGCTCCGGGCAAGCCCACGCTGGTGTGCTCCAGTGCGGTGGGGAGCTGGTCATACTCGCAGCAGAGGA  2263

Query 2264  GGCAGAGGGTGTGCTCTGGCGAGGGTAAGCAGAAGACCGACCTCATGGCCTTCAGCCCGGGCCTTT-CTCCTTG  2336
            |||.|||||||||||||||.|||||....|..||||||||||||||||||||||||||..|  ||| |      
Sbjct 2264  GGCCGAGGGTGTGCTCTGGTGAGGGCCCACCCAAGACCGACCTCATGGCCTTCAGCCCCAG--TTTAC------  2329

Query 2337  TGCTGGATCT----ACAGAGCGAACGGGAGAACCCTCTGCTTCCTCAGATTCAACTG-GGAAGCCACGACAGCC  2405
              |||..|||    |||||       |.|||    ||.|||   .||||  |||||| ||||.||         
Sbjct 2330  --CTGACTCTAGGGACAGA-------GAAGA----TCAGCT---GCAGA--CAACTGAGGAATCC---------  2376

Query 2406  CAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCA  2479
                           ||                        ||||.||.|..|||.|                 
Sbjct 2377  ---------------TT------------------------TGCAAAGGTTAGTGTA-----------------  2394

Query 2480  TTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCA  2553
                                                                                      
Sbjct 2395  --------------------------------------------------------------------------  2394

Query 2554  GGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCC  2627
                                                                                      
Sbjct 2395  --------------------------------------------------------------------------  2394

Query 2628  CAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGC  2701
                                                                                      
Sbjct 2395  --------------------------------------------------------------------------  2394

Query 2702  AGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAG  2775
                                                                                      
Sbjct 2395  --------------------------------------------------------------------------  2394

Query 2776  AAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCA  2849
                                                                                      
Sbjct 2395  --------------------------------------------------------------------------  2394

Query 2850  G  2850
             
Sbjct 2395  -  2394

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