Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02234
Subject:
NM_031849.3
Aligned Length:
2942
Identities:
1726
Gaps:
976

Alignment

Query    1  ---ATGTTATACTCAAGTC-GAGG--AGATCCAGAGGGTCAGC---CTCTACTGCTCTCGCTTCTGATCCTCGC  65
               .|||| |||.|    | ||||  ||||    .|||..|||   .|||.||.|||.||||||||.|||||||
Sbjct    1  ATGGTGTT-TACCC----CGGAGGATAGAT----TGGGAAAGCAATGTCTGCTCCTCCCGCTTCTGCTCCTCGC  65

Query   66  AATGTGGGTGGTGGGGAGCGGCCAGCTCCACTACTCCGTCCCGGAGGAAGCCGAACACGGCACCTTCGTGGGCC  139
            |...|||..||||||||||||||||||||||||||||||.||.|||||.|||.|||||||||||||||||||||
Sbjct   66  AGCCTGGAAGGTGGGGAGCGGCCAGCTCCACTACTCCGTACCCGAGGAGGCCAAACACGGCACCTTCGTGGGCC  139

Query  140  GCATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCAGTTGGATTCCAAAGGCCGC  213
            |.|||||||||||||||||||||||||||||||||||||||||||||||||||..|.|||..|||||||.||||
Sbjct  140  GGATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCAGGATGGCCTCCAAAGACCGC  213

Query  214  GGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTG  287
            |.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  214  GAGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTG  287

Query  288  CGGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTAGACAGGCCGCTGCAGGTTTTCCATGTGGACG  361
            ||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct  288  CGGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACG  361

Query  362  TGGAGGTGAAGGACATTAACGACAACCCTCCAGTGTTCCC---AGCGACACAAAAGAAT-CTG-TTCATCGCGG  430
            |||||||||.||||||||||||||||||.||..|||||||   ||.|..|| |||||.| ||| ||.|    .|
Sbjct  362  TGGAGGTGAGGGACATTAACGACAACCCGCCCTTGTTCCCGGTAGAGGAAC-AAAGAGTGCTGATTTA----CG  430

Query  431  AATCCAGGCCGCTTGACTCTCGGTTTCCACTAGAGGGCGCGTCCGATGCAGATATCGGGGAGAACGCCCTGCTC  504
            ||||.||||.||..||.|||..|||||||||.|||||||||||||||||||||.|.||....||..||.|..|.
Sbjct  431  AATCTAGGCTGCCAGATTCTGTGTTTCCACTGGAGGGCGCGTCCGATGCAGATGTTGGCTCAAATTCCATCTTA  504

Query  505  ACTTACAGACTGAGCCCCAATGAGTATTTCTTCCTGGACGTGCCAACCAGCAACCAGCAGGTA-------AAAC  571
            ||.||.|.|||.||..|.|..||.||.|||...||.||.|||  ||     ||..|.|||..|       ||||
Sbjct  505  ACCTATAAACTCAGTTCTAGCGAATACTTCGGGCTAGATGTG--AA-----AATAAACAGTGATGACAATAAAC  571

Query  572  CTCTTGGACTTGTATTACGGAAACTTTTAGACAGAGAAGAAACTCCGGAGCTTCATTTATTGCTCACGGCCACC  645
            ...||||.||..|||||..||||...||.||||||||.|||.||||.|..|...|.|||||.||.||.|||||.
Sbjct  572  AAATTGGGCTCTTATTAAAGAAATCCTTGGACAGAGAGGAAGCTCCTGCACACAACTTATTCCTGACAGCCACA  645

Query  646  GATGGAGGCAAACCCGAGCTGACTGGCACCGTTCAATTACTCATCACGGTACTGGACAACAATGACAATGC-CC  718
            |||||.||||||||.|||||.||.|||||.|||||..|.||..||||.||.|||||....|||||.||||| ||
Sbjct  646  GATGGGGGCAAACCTGAGCTCACAGGCACTGTTCAGCTGCTGGTCACAGTGCTGGATGTGAATGATAATGCTCC  719

Query  719  CAGTGTTCG-ACAGAACCCTGTATACG--GT----------GAAATTACCAGAAAACGTTTC------TATCGG  773
            ||.| |||| ||||   .|||.|||||  ||          ||||.| .||||.||||...|      ||||.|
Sbjct  720  CACT-TTCGAACAG---TCTGAATACGAAGTAAGAATATTCGAAAAT-GCAGACAACGGAACAACAGTTATCAG  788

Query  774  AACGCTGGTGATTCACCCCAATGCCTCAGATTTAGACGAAGGCTTGAATGGGG-------ATATTATTTACTCC  840
            |   |||            |||||.||.|||...||.|||||...||||||||       |||||.|||     
Sbjct  789  A---CTG------------AATGCTTCTGATCGGGATGAAGGAGCGAATGGGGCAATTTCATATTCTTT-----  842

Query  841  TTCTCCAGTGATGTTTCTCCAGATATAAAATCCAAGTTCCA--CATG------GACCCCTTAAG----------  896
                                     |||.|.||..|||.||  ||||      ||||.|||.||          
Sbjct  843  -------------------------TAATAGCCTTGTTGCAGCCATGGTTATTGACCACTTTAGCATAGATCGA  891

Query  897  -----TGGGGCAATCACAGTGAT---AGGACATATGGATTTTGAAGAAAGTAGAGCAC----ACAAGATCC-CA  957
                 .||.|.|||   ||||||   .||..||.|||||||||||.|    |||..||    ||||.|||| ||
Sbjct  892  AATACGGGAGAAAT---AGTGATTCGGGGTAATTTGGATTTTGAACA----AGAAAACTTATACAAAATCCTCA  958

Query  958  GTCGAGGCTGTCGATAAAGGCTTCCCACCCCTGGCTGGTCATTGTACACTTCTTGTG-GAAGTTGTGGATGTAA  1030
             |.||.||....||.||||||...||.|||.||||.||||||||.||..||.|.||| ||| ||.|||||..||
Sbjct  959  -TTGACGCCACGGACAAAGGCCATCCTCCCATGGCGGGTCATTGCACCGTTTTAGTGAGAA-TTTTGGATAAAA  1030

Query 1031  ATGACAATGCTCC-----ACAG--TTGAC-----TATCAAAACGCTCTCGGTTCCTGTAAAAGAGGACGCACAA  1092
            ||||.||.| |||     |.||  .||||     ||||      ||     |.||||||...||.|||||.|||
Sbjct 1031  ATGATAACG-TCCCTGAGATAGCACTGACTTCCTTATC------CT-----TGCCTGTACGTGAAGACGCTCAA  1092

Query 1093  CTGGGGACAGTTATTGCCCTGATTAGTGTGATCGACCTAGACGCAGATGCCAACGGGCAGGTTACCTGCTCCCT  1166
            .|.||.||.||.||.|||||.|||||.||||.||||||.||..|||.|||||||||||||||.|.||||||.||
Sbjct 1093  TTTGGTACTGTCATCGCCCTAATTAGCGTGAACGACCTCGATTCAGGTGCCAACGGGCAGGTGAACTGCTCGCT  1166

Query 1167  GACGCCCCACGTCCCCTTCAAGCTGGTGTCCACCTACAAGAATTACTACTCGTTGGTGCTGGACAGAGCTCTGG  1240
            ||||||.||||||||.|||||||||||||||||||.||||||||||||||||||||||||||||||.||.||||
Sbjct 1167  GACGCCTCACGTCCCTTTCAAGCTGGTGTCCACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGTGCCCTGG  1240

Query 1241  ACCGCGAGAGTGTGTCCGCCTACGAGCTGGTGGTTACCGCGCGGGACGGGGGCTCGCCTTCACTGTGGGCCACG  1314
            ||||||||||.|||||.|||||.|||.|||||||.||||||||||||||||||||||||||.|||||||||||.
Sbjct 1241  ACCGCGAGAGCGTGTCGGCCTATGAGTTGGTGGTAACCGCGCGGGACGGGGGCTCGCCTTCGCTGTGGGCCACC  1314

Query 1315  GCCAGGGTGTCTGTGGAGGTGGCCGACGTGAACGACAACGCACCAGCGTTCGCGCAGTCCGAGTACACGGTGTT  1388
            |||||..||||||||||||||||||||.||||.|||||.||.||.||||||||||||.||||||||||.|||||
Sbjct 1315  GCCAGCTTGTCTGTGGAGGTGGCCGACATGAATGACAATGCTCCGGCGTTCGCGCAGCCCGAGTACACAGTGTT  1388

Query 1389  CGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCACGGTGTCTGCGCGGGACGCTGACGCGCAGGAGAACG  1462
            |||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.||||||||||||||||
Sbjct 1389  CGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCACGGTGTCTGCGCGAGACGCGGACGCGCAGGAGAACG  1462

Query 1463  CCCTGGTGTCCTACTCGCTGGTGGAGCGGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCAGTGCACGCG  1536
            |.||||||||||||||||||||||||||||||.|||||||||||.||.|||||||||||.|.||.|||||||||
Sbjct 1463  CGCTGGTGTCCTACTCGCTGGTGGAGCGGCGGGTGGGCGAGCGCGCGTTGTCGAGCTACATTTCGGTGCACGCG  1536

Query 1537  GAGAGCGGCAAGGTGTACGCGCTGCAGCCGTTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGC  1610
            ||||||||||||||||||||||||||||||.||||||||||||||||.||||||||.|||||.|          
Sbjct 1537  GAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAGGAGCTAGAGCTGCTGCAGTTTC----------  1600

Query 1611  GCGCGACGCGGGCGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAATG  1684
                                                                                      
Sbjct 1601  --------------------------------------------------------------------------  1600

Query 1685  CGCCGGCGCTGCTGACACCTCGGATGAGGGGCACTGACGGCGCAGTGAGCGAGATGGTGCTGCGGTCGGTGGGC  1758
                                                                                      
Sbjct 1601  --------------------------------------------------------------------------  1600

Query 1759  GCCGGCGTAGTGGTGGGGAAGGTGCGCGCAGTGGACGCCGACTCGGGCTACAACGCGTGGCTTTCATACGAGCT  1832
                                                                                      
Sbjct 1601  --------------------------------------------------------------------------  1600

Query 1833  GCAGCCAGAAACGGCCAGCGCGAGCATCCCGTTCCGCGTGGGGCTGTACACGGGCGAGATCAGCACAACGCGTG  1906
                                                                                      
Sbjct 1601  --------------------------------------------------------------------------  1600

Query 1907  CCCTGGACGAAACGGACGCACCGCGCCAGCGCCTACTGGTGCTGGTGAAAGACCACGGGGAGCCAGCGCTGACG  1980
                                                                                      
Sbjct 1601  --------------------------------------------------------------------------  1600

Query 1981  GCCACGGCCACTGTGCTGGTGTCGCTGGTGGAGAGCGGCCAGGCGCCAAAGTCATCGTCGCGGGCGTCAGTGGG  2054
                                                                                      
Sbjct 1601  --------------------------------------------------------------------------  1600

Query 2055  TGCCACGGGCCCCGAGGTGACGCTGGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTGTCTAGCC  2128
                                                                                      
Sbjct 1601  --------------------------------------------------------------------------  1600

Query 2129  TGTTGGTTCTCACGCTGCTGCTGTACACTGTGCTGCGGTGCTCGGCGATGCCCACCGAGGGCGAGTGCGCGCCT  2202
                                                                                      
Sbjct 1601  --------------------------------------------------------------------------  1600

Query 2203  GGCAAGCCGACGCTGGTGTGTTCTAGCGCGGTGGGGAGTTGGTCGTACTCGCAGCAGAGGAGGCAGAGGGTGTG  2276
                                                                                      
Sbjct 1601  --------------------------------------------------------------------------  1600

Query 2277  CTCTGGCGAGGGTAAGCAGAAGACCGACCTCATGGCCTTCAGCCCGGGCCTTTCTCCTTGTGCTGGATCTACAG  2350
                                                                                      
Sbjct 1601  --------------------------------------------------------------------------  1600

Query 2351  AGCGAACGGGAGAACCCTCTGCTTCCTCAGATTCAACTGGGAAGCCACGACAGCCCAACCCTGACTGGCGTTAC  2424
                                                      ||||||||||||||||||||||||||||||||
Sbjct 1601  ------------------------------------------AGCCACGACAGCCCAACCCTGACTGGCGTTAC  1632

Query 2425  TCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGG  2498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1633  TCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGG  1706

Query 2499  AGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAG  2572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707  AGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAG  1780

Query 2573  TCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGT  2646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1781  TCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGT  1854

Query 2647  GAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCA  2720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855  GAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCA  1928

Query 2721  AATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTA  2794
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1929  AATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTA  2002

Query 2795  ACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG  2850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2003  ACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG  2058

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