Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02234
Subject:
NM_031852.1
Aligned Length:
2862
Identities:
2129
Gaps:
507

Alignment

Query    1  ATGTTATACTCAAGTCGAGGAGATCCAGAGGGTCAGCCTCTACTGCTCTCGCTTCTGATCCTCGCAATGTGGGT  74
            |||.|.|.|.|.|.|.||...||.||||.|||.|..|.|||||||||.|...||.|.||.||.|||...||||.
Sbjct    1  ATGGTGTGCCCGAATGGATACGACCCAGGGGGCCGACATCTACTGCTGTTTATTATAATTCTAGCAGCTTGGGA  74

Query   75  GGTGGGGAGCGGCCAGCTCCACTACTCCGTCCCGGAGGAAGCCGAACACGGCACCTTCGTGGGCCGCATCGCGC  148
            ||..|||||.|||||||||||||||||.|||||.|||||.||..||||.||||.||||||||||||||||||||
Sbjct   75  GGCAGGGAGAGGCCAGCTCCACTACTCGGTCCCCGAGGAGGCTAAACATGGCAACTTCGTGGGCCGCATCGCGC  148

Query  149  AGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCAGTTGGATTCCAAAGGCCGCGGGGACCTT  222
            |||||||||||||||||||||||||||||||||||||||||||||.|..||..|.||||..|||.|||||.|||
Sbjct  149  AGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCGGGCGGTGTGCAAATTCCGTGGGGATCTT  222

Query  223  CTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCGGGCGGAG  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCGGGCGGAG  296

Query  297  CGCGGAGTGCAGCATCCACCTGGAGGTGATCGTAGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAGGTGA  370
            |||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||||||||||||||||
Sbjct  297  CGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGAAAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAGGTGA  370

Query  371  AGGACATTAACGACAACCCTCCAGTGTTCCCAGCGACACAAAAGAATCTGTTCATCGCGGAATCCAGGCCGCTT  444
            ||||||||||||||||||||||.|||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct  371  AGGACATTAACGACAACCCTCCGGTGTTCCCAGCGACACAAAGGAATCTGTTCATCGCGGAATCCAGGCCGCTT  444

Query  445  GACTCTCGGTTTCCACTAGAGGGCGCGTCCGATGCAGATATCGGGGAGAACGCCCTGCTCACTTACAGACTGAG  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GACTCTCGGTTTCCACTAGAGGGCGCGTCCGATGCAGATATCGGGGAGAACGCCCTGCTCACTTACAGACTGAG  518

Query  519  CCCCAATGAGTATTTCTTCCTGGACGTGCCAACCAGCAACCAGCAGGTAAAACCTCTTGGACTTGTATTACGGA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CCCCAATGAGTATTTCTTCCTGGACGTGCCAACCAGCAACCAGCAGGTAAAACCTCTTGGACTTGTATTACGGA  592

Query  593  AACTTTTAGACAGAGAAGAAACTCCGGAGCTTCATTTATTGCTCACGGCCACCGATGGAGGCAAACCCGAGCTG  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AACTTTTAGACAGAGAAGAAACTCCGGAGCTTCATTTATTGCTCACGGCCACCGATGGAGGCAAACCCGAGCTG  666

Query  667  ACTGGCACCGTTCAATTACTCATCACGGTACTGGACAACAATGACAATGCCCCAGTGTTCGACAGAACCCTGTA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ACTGGCACCGTTCAATTACTCATCACGGTACTGGACAACAATGACAATGCCCCAGTGTTCGACAGAACCCTGTA  740

Query  741  TACGGTGAAATTACCAGAAAACGTTTCTATCGGAACGCTGGTGATTCACCCCAATGCCTCAGATTTAGACGAAG  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TACGGTGAAATTACCAGAAAACGTTTCTATCGGAACGCTGGTGATTCACCCCAATGCCTCAGATTTAGACGAAG  814

Query  815  GCTTGAATGGGGATATTATTTACTCCTTCTCCAGTGATGTTTCTCCAGATATAAAATCCAAGTTCCACATGGAC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GCTTGAATGGGGATATTATTTACTCCTTCTCCAGTGATGTTTCTCCAGATATAAAATCCAAGTTCCACATGGAC  888

Query  889  CCCTTAAGTGGGGCAATCACAGTGATAGGACATATGGATTTTGAAGAAAGTAGAGCACACAAGATCCCAGTCGA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CCCTTAAGTGGGGCAATCACAGTGATAGGACATATGGATTTTGAAGAAAGTAGAGCACACAAGATCCCAGTCGA  962

Query  963  GGCTGTCGATAAAGGCTTCCCACCCCTGGCTGGTCATTGTACACTTCTTGTGGAAGTTGTGGATGTAAATGACA  1036
            |||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct  963  GGCTGTCGATAAAGGCTTCCCACCCCTGGCTGGTCATTGTACAGTTCTTGTGGAAGTTGTGGATGTAAATGACA  1036

Query 1037  ATGCTCCACAGTTGACTATCAAAACGCTCTCGGTTCCTGTAAAAGAGGACGCACAACTGGGGACAGTTATTGCC  1110
            |||||||||||||||||.|||...|.||.||..|.|||.|...|||||||||.||||..||.||.||.||..|.
Sbjct 1037  ATGCTCCACAGTTGACTCTCACTTCCCTGTCTCTCCCTATTCCAGAGGACGCCCAACCAGGTACCGTCATCACA  1110

Query 1111  CTGATTAGTGTGATCGACCTAGACGCAGATGCCAACGGGCAGGTTACCTGCTCCCTGACGCCCCACGTCCCCTT  1184
            .|||||||.|||.|.||||.|||....|..|.||||||.|||||||||||||||||||||||||.|||.|||||
Sbjct 1111  TTGATTAGCGTGTTTGACCGAGATTTTGGAGTCAACGGACAGGTTACCTGCTCCCTGACGCCCCGCGTTCCCTT  1184

Query 1185  CAAGCTGGTGTCCACCTACAAGAATTACTACTCGTTGGTGCTGGACAGAGCTCTGGACCGCGAGAGTGTGTCCG  1258
            ||||.||||||||||||.||||||||||||.||.||||||||||||||.|||||||||||||||||||||||||
Sbjct 1185  CAAGTTGGTGTCCACCTTCAAGAATTACTATTCATTGGTGCTGGACAGCGCTCTGGACCGCGAGAGTGTGTCCG  1258

Query 1259  CCTACGAGCTGGTGGTTACCGCGCGGGACGGGGGCTCGCCTTCACTGTGGGCCACGGCCAGGGTGTCTGTGGAG  1332
            ||||.||||||||||||||||||||||||||||||||||||||.|||||||||||.||.||.|||||.||||||
Sbjct 1259  CCTATGAGCTGGTGGTTACCGCGCGGGACGGGGGCTCGCCTTCTCTGTGGGCCACTGCTAGCGTGTCCGTGGAG  1332

Query 1333  GTGGCCGACGTGAACGACAACGCACCAGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCC  1406
            |||||||||||||||||||||||.||.||||||||||||.|||||||.||||||||||||||||||||||||||
Sbjct 1333  GTGGCCGACGTGAACGACAACGCCCCGGCGTTCGCGCAGCCCGAGTATACGGTGTTCGTGAAGGAGAACAACCC  1406

Query 1407  GCCGGGCTGCCACATCTTCACGGTGTCTGCGCGGGACGCTGACGCGCAGGAGAACGCCCTGGTGTCCTACTCGC  1480
            |||||||||||||||||||||.|||||.|||.|||||||.|||||||||.|||||||.||||||||||||||||
Sbjct 1407  GCCGGGCTGCCACATCTTCACTGTGTCGGCGGGGGACGCGGACGCGCAGAAGAACGCGCTGGTGTCCTACTCGC  1480

Query 1481  TGGTGGAGCGGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCAGTGCACGCGGAGAGCGGCAAGGTGTAC  1554
            |||||||||.||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TGGTGGAGCTGCGGGTGGGCGAGCGCGCGCTGTCGAGCTACGTGTCAGTGCACGCGGAGAGCGGCAAGGTGTAC  1554

Query 1555  GCGCTGCAGCCGTTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGCGCGCGACGCGGGCGTGCC  1628
            ||||||||||||||||||||||||||||||||||||.|.|||||||||||||||||||||||.|||||||||||
Sbjct 1555  GCGCTGCAGCCGTTGGACCACGAGGAGCTGGAGCTGTTGCAGTTCCAGGTGAGCGCGCGCGATGCGGGCGTGCC  1628

Query 1629  GCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAATGCGCCGGCGCTGCTGACAC  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.||||||.|.|
Sbjct 1629  GCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAACGCGCCGGCACTGCTGGCGC  1702

Query 1703  CTCGGATGAGGGGCACTGACGGCGCAGTGAGCGAGATGGTGCTGCGGTCGGTGGGCGCCGGCGTAGTGGTGGGG  1776
            |||||.||.|.|||||||..|||||||||||.|||.|.||||.||||||.||||||||.|||...|||||||.|
Sbjct 1703  CTCGGGTGGGTGGCACTGGTGGCGCAGTGAGAGAGCTTGTGCCGCGGTCTGTGGGCGCGGGCCATGTGGTGGCG  1776

Query 1777  AAGGTGCGCGCAGTGGACGCCGACTCGGGCTACAACGCGTGGCTTTCATACGAGCTGCAGCCAGAAACGGCCAG  1850
            |||||.||.|||||.|||||.|||||.||||||||||||||||||||.||.|||.||||.||.|...|||||.|
Sbjct 1777  AAGGTACGTGCAGTTGACGCTGACTCAGGCTACAACGCGTGGCTTTCGTATGAGTTGCAACCGGTGGCGGCCGG  1850

Query 1851  CGCGAGCATCCCGTTCCGCGTGGGGCTGTACACGGGCGAGATCAGCACAACGCGTGCCCTGGACGAAACGGACG  1924
            .||||||||||||||||||||||||||||||||.||.|||||||||||.||.||.|||||.||.||.|||||||
Sbjct 1851  TGCGAGCATCCCGTTCCGCGTGGGGCTGTACACTGGTGAGATCAGCACGACACGAGCCCTAGATGAGACGGACG  1924

Query 1925  CACCGCGCCAGCGCCTACTGGTGCTGGTGAAAGACCACGGGGAGCCAGCGCTGACGGCCACGGCCACTGTGCTG  1998
            ||||||||||.|||||.||||||||.|||||.||||||||||||||..|||||||.|||||.|||||.||||||
Sbjct 1925  CACCGCGCCACCGCCTTCTGGTGCTTGTGAAGGACCACGGGGAGCCCTCGCTGACAGCCACAGCCACCGTGCTG  1998

Query 1999  GTGTCGCTGGTGGAGAGCGGCCAGGCGCCAAAGTCATCGTCGCGGGCGTCAGTGGGTGCCA---CGGGCCCCGA  2069
            ||||||||||||||.|||||||||||.||||||.|.|||||||||||.||..||||   ||   |.|||||.||
Sbjct 1999  GTGTCGCTGGTGGAAAGCGGCCAGGCACCAAAGGCGTCGTCGCGGGCATCGTTGGG---CATTGCAGGCCCAGA  2069

Query 2070  GGTGAC---GCTGGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTGTCTAGCCTGTTGGTTCTCA  2140
               |||   ||||||||||||||||||||||||||||||||||||||||||||||||.||.||||||||.||.|
Sbjct 2070  ---GACCGAGCTGGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTGTCCAGTCTGTTGGTGCTTA  2140

Query 2141  CGCTGCTGCTGTACACTGTGCTGCGGTGCTCGGCGATGCCCACCGAGGGCG-----AGTGCGCGCCTGG-CAAG  2208
            |.||||||||||||||.|.|.||||||||||.|||..|.||.|.|||||||     |||      .||| .|||
Sbjct 2141  CCCTGCTGCTGTACACGGCGTTGCGGTGCTCAGCGCCGTCCTCTGAGGGCGCATGTAGT------TTGGTAAAG  2208

Query 2209  CCGACGCTGGTGTGTTCTAGCGCGGTGGGGAGTTGGTCGTACTCGCAGCAGAGGAGGCAGAGGGTGTGCTCTGG  2282
            ||.||.||||||||.||.||||||||||||||.|||||.|.|||.|||||||||.|||||||||||||||||||
Sbjct 2209  CCCACTCTGGTGTGCTCCAGCGCGGTGGGGAGCTGGTCATTCTCCCAGCAGAGGCGGCAGAGGGTGTGCTCTGG  2282

Query 2283  CGAGGGTAAGCAGAAGACCGACCTCATGGCCTTCAGCCCGGGCCTTTCTCCTTGTGCTGGATCTACAGAGCGAA  2356
            .|||||....|..|||||.|||||||||||||||||.||..|||||.|||...||.|....||||||||  .||
Sbjct 2283  GGAGGGCCCACCCAAGACAGACCTCATGGCCTTCAGTCCCAGCCTTCCTCAGGGTCCATCCTCTACAGA--CAA  2354

Query 2357  CGGGAGAACCCTCTGCTTCCTCAGATTCAACTGGGAAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCC  2430
            .|.|||              |||   |.||                                            
Sbjct 2355  TGTGAG--------------TCA---TAAA--------------------------------------------  2367

Query 2431  TCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCC  2504
                                                                                      
Sbjct 2368  --------------------------------------------------------------------------  2367

Query 2505  TGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTG  2578
                                                                                      
Sbjct 2368  --------------------------------------------------------------------------  2367

Query 2579  CGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTG  2652
                                                                                      
Sbjct 2368  --------------------------------------------------------------------------  2367

Query 2653  CCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGA  2726
                                                                                      
Sbjct 2368  --------------------------------------------------------------------------  2367

Query 2727  CAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGA  2800
                                                                                      
Sbjct 2368  --------------------------------------------------------------------------  2367

Query 2801  CCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG  2850
                                                              
Sbjct 2368  --------------------------------------------------  2367

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