Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02234
Subject:
NM_031860.3
Aligned Length:
2915
Identities:
1735
Gaps:
925

Alignment

Query    1  ATGTTATACTCAAGTCGAGGAGAT-------CCAGAGGGT-CAGCCTCTACTGCTCTCGCTTCTGATCCTCGCA  66
            |||.|.|.|           ||||       ||.|.|||| |||..|||.||||||||||||||..||||||||
Sbjct    1  ATGGTTTCC-----------AGATGTAGCTGCCTGGGGGTCCAGTGTCTGCTGCTCTCGCTTCTTCTCCTCGCA  63

Query   67  ATGTGGGTGGTGGGGAGCGGCCAGCTCCACTACTCCGTCCCGGAGGAAGCCGAACACGGCACCTTCGTGGGCCG  140
            ...||||.|||||||||||||||||||||||||||.|||...|||||.|||..|||||||||||||||||||||
Sbjct   64  GCCTGGGAGGTGGGGAGCGGCCAGCTCCACTACTCAGTCTACGAGGAGGCCAGACACGGCACCTTCGTGGGCCG  137

Query  141  CATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCAGTTGGATTCCAAAGGCCGCG  214
            |||||||||||||||||||||||||||||||||||||||||.|||||||||||.|.|||..||||||.|.|.||
Sbjct  138  CATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAAGACACG  211

Query  215  GGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGC  288
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct  212  GGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATTGACCGCGAGGAGCTGTGC  285

Query  289  GGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTAGACAGGCCGCTGCAGGTTTTCCATGTGGACGT  362
            ||||||||||.||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct  286  GGGCGGAGCGTGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGT  359

Query  363  GGAGGTGAAGGACATTAACGACAACCC-TCCAGTGTTCCCAGCGACACAAAAGAATCTGTTCATCGCGGAATCC  435
            |||.||||||||||||||||||||||| .|||| ||||.|.|..|||.||.|.||.||.|..||..|.||||||
Sbjct  360  GGAAGTGAAGGACATTAACGACAACCCGCCCAG-GTTCTCCGTAACAGAACAAAAGCTCTCAATACCTGAATCC  432

Query  436  AGGCCGCTTGACTCTCGGTTTCCACTAGAGGGCGCGTCCGATGCAGATATCGGGGAGAACGCCCTGCTCACTTA  509
            ||.|.||||||||||||.|||||||||||.|||||.||.|||||.|||.|.||.||||||||..||||.|||||
Sbjct  433  AGACTGCTTGACTCTCGATTTCCACTAGAAGGCGCATCTGATGCGGATGTTGGAGAGAACGCATTGCTTACTTA  506

Query  510  CAGACTGAGCCCCAATGAGTATTTCTTCCTGGACGT-------------GCCAACCAG-CAA----CCAGCAGG  565
            ||.|||.||.||.|||||||||||..|.||.||..|             |.|||  || |||    ||||    
Sbjct  507  CAAACTCAGTCCAAATGAGTATTTTGTTCTTGATATTATAAACAAAAAAGACAA--AGACAAATTCCCAG----  574

Query  566  TAAAACCTCTTGGACTTGTATTACGGAAACTTTTAGACAGAGAAGAAACTCCGGAGCTTCATTTATTGCTCACG  639
                      ||  |||||..|.|||||.||..|.||..|.|||||||.|||..||||..|.||.|||.|.||.
Sbjct  575  ----------TG--CTTGTTCTGCGGAAGCTGCTGGATCGTGAAGAAAATCCTCAGCTAAAGTTGTTGTTGACA  636

Query  640  GCCACCGATGGAGGCAAACCCGAGCTGACTGGCACCGTTCAATTACTCATCACGGTACTGGACAACAATGACAA  713
            ||.||.||||||||||||||.||..|.||.||..|.|||....|.||.|||..|||..|.||...||||||.||
Sbjct  637  GCAACTGATGGAGGCAAACCTGAATTTACCGGATCTGTTTCTCTGCTGATCCTGGTGTTAGATGCCAATGATAA  710

Query  714  TGCCCCAGTGTTCGACAGAACCCTGTATACGGTGAAATTACCA-----GAAAACGTTTC----TATCGGAACGC  778
            .|||||..|.||.||||||  ||.||.||   ||||.|||..|     |||||    ||    .|.|..|||..
Sbjct  711  CGCCCCTATCTTTGACAGA--CCGGTTTA---TGAAGTTAAGATGTATGAAAA----TCAAGTGAACCAAACAT  775

Query  779  TGGTGATTCACCCCAATGCCTCAGATTTAGACGAAGGCTTGAATGGGGATATTATTTACTCCTT---CTCCAGT  849
            |.||.||.|..|.|||.||.||.||||..||.|||||..|.||...|||.||.||.||.||.||   |||    
Sbjct  776  TAGTAATACGGCTCAACGCTTCTGATTCGGATGAAGGAATAAACAAGGAAATGATGTATTCATTTAGCTC----  845

Query  850  GATGTT---TCTCCA-----GATATAAAATCCAAGTTCCACATGGACCCCTTAA----------GTGGGGCAAT  905
                ||   || |||     |||| |.||...||.||     ||||     |||          | ||.|.|||
Sbjct  846  ----TTTGGTC-CCACCCACGATA-AGAAGGAAATTT-----TGGA-----TAAACGAAAGGACG-GGAGAAAT  902

Query  906  CACAGTGATAGGA--CATATGGATTTTGAAGAAAGTAGAGCACAC-----AAGATCCCAGTCGAGGCTGTCGAT  972
            .|.||| |.|.||  | |||.||.|||||.||.||||    ||||     || ||.|..||.||.|.|...|||
Sbjct  903  AAAAGT-AAATGATGC-TATTGACTTTGAGGACAGTA----ACACTTATGAA-ATTCATGTAGATGTTACAGAT  969

Query  973  AAAGGCTTCCCACCCCTGGCTGGTCATTGTACACTTCTTGTGGAAGTTGTGGATGTAAATGACAATGCTCCACA  1046
            ||.||...||||||..|||.||||||.||.||..|.||.||||||.|..||||||.||||||.|||.|.||..|
Sbjct  970  AAGGGAAACCCACCTATGGTTGGTCACTGCACGGTCCTAGTGGAACTACTGGATGAAAATGATAATTCACCTGA  1043

Query 1047  GTTGACTATCAAAACGCTCTCGGTTCCTGTAAAAGAGGACGCACAACTGGGGACAGTTATTGCCCTGATTAGTG  1120
            |.|||.|.|||...|.||.||..|.||.||.|||||.||.||.|||.||||.||.||.||||||||.||.||.|
Sbjct 1044  GGTGATTGTCACTTCTCTGTCTCTCCCAGTGAAAGAAGATGCTCAAGTGGGCACCGTCATTGCCCTAATCAGCG  1117

Query 1121  TGATC-GACCTAGACGCAGATGCCAACGGGCAGGTTACCTGCTCCCTGACGCCCCACGTCCCCTTCAAGCTGGT  1193
            | .|| ||||..||..|||..||||||||.|||||.||||||||.||||||||.|||||.||.|||||||||||
Sbjct 1118  T-TTCTGACCATGATTCAGGAGCCAACGGACAGGTCACCTGCTCTCTGACGCCTCACGTTCCGTTCAAGCTGGT  1190

Query 1194  GTCCACCTACAAGAATTACTACTCGTTGGTGCTGGACAGAGCTCTGGACCGCGAGAGTGTGTCCGCCTACGAGC  1267
            ||||||||||||||||||||||||.||||||||||||||.|||||||||||||||||.|||||.|||||.||||
Sbjct 1191  GTCCACCTACAAGAATTACTACTCATTGGTGCTGGACAGCGCTCTGGACCGCGAGAGGGTGTCGGCCTATGAGC  1264

Query 1268  TGGTGGTTACCGCGCGGGACGGGGGCTCGCCTTCACTGTGGGCCACGGCCAGGGTGTCTGTGGAGGTGGCCGAC  1341
            |||||||.||||||||||||||||||||||||.|.|||||||||||||||||.|||||||||||||||||||||
Sbjct 1265  TGGTGGTGACCGCGCGGGACGGGGGCTCGCCTCCGCTGTGGGCCACGGCCAGCGTGTCTGTGGAGGTGGCCGAC  1338

Query 1342  GTGAACGACAACGCACCAGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCGGGCTG  1415
            ||||||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1339  GTGAACGACAACGCGCCTGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCAGGCTG  1412

Query 1416  CCACATCTTCACGGTGTCTGCGCGGGACGCTGACGCGCAGGAGAACGCCCTGGTGTCCTACTCGCTGGTGGAGC  1489
            ||||||||||||||||||||||.|||||||.||||||||||||||||||||||||||||||||.||||||||||
Sbjct 1413  CCACATCTTCACGGTGTCTGCGTGGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCTCTGGTGGAGC  1486

Query 1490  GGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCAGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAG  1563
            |||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 1487  GGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAG  1560

Query 1564  CCGTTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCTCTGGG  1637
            |||.|||||||||||||||||||||||||||||||||                                     
Sbjct 1561  CCGCTGGACCACGAGGAGCTGGAGCTGCTACAGTTCC-------------------------------------  1597

Query 1638  CAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAATGCGCCGGCGCTGCTGACACCTCGGATGA  1711
                                                                                      
Sbjct 1598  --------------------------------------------------------------------------  1597

Query 1712  GGGGCACTGACGGCGCAGTGAGCGAGATGGTGCTGCGGTCGGTGGGCGCCGGCGTAGTGGTGGGGAAGGTGCGC  1785
                                                                                      
Sbjct 1598  --------------------------------------------------------------------------  1597

Query 1786  GCAGTGGACGCCGACTCGGGCTACAACGCGTGGCTTTCATACGAGCTGCAGCCAGAAACGGCCAGCGCGAGCAT  1859
                                                                                      
Sbjct 1598  --------------------------------------------------------------------------  1597

Query 1860  CCCGTTCCGCGTGGGGCTGTACACGGGCGAGATCAGCACAACGCGTGCCCTGGACGAAACGGACGCACCGCGCC  1933
                                                                                      
Sbjct 1598  --------------------------------------------------------------------------  1597

Query 1934  AGCGCCTACTGGTGCTGGTGAAAGACCACGGGGAGCCAGCGCTGACGGCCACGGCCACTGTGCTGGTGTCGCTG  2007
                                                                                      
Sbjct 1598  --------------------------------------------------------------------------  1597

Query 2008  GTGGAGAGCGGCCAGGCGCCAAAGTCATCGTCGCGGGCGTCAGTGGGTGCCACGGGCCCCGAGGTGACGCTGGT  2081
                                                                                      
Sbjct 1598  --------------------------------------------------------------------------  1597

Query 2082  GGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTGTCTAGCCTGTTGGTTCTCACGCTGCTGCTGTACA  2155
                                                                                      
Sbjct 1598  --------------------------------------------------------------------------  1597

Query 2156  CTGTGCTGCGGTGCTCGGCGATGCCCACCGAGGGCGAGTGCGCGCCTGGCAAGCCGACGCTGGTGTGTTCTAGC  2229
                                                                                      
Sbjct 1598  --------------------------------------------------------------------------  1597

Query 2230  GCGGTGGGGAGTTGGTCGTACTCGCAGCAGAGGAGGCAGAGGGTGTGCTCTGGCGAGGGTAAGCAGAAGACCGA  2303
                                                                                      
Sbjct 1598  --------------------------------------------------------------------------  1597

Query 2304  CCTCATGGCCTTCAGCCCGGGCCTTTCTCCTTGTGCTGGATCTACAGAGCGAACGGGAGAACCCTCTGCTTCCT  2377
                                                                                      
Sbjct 1598  --------------------------------------------------------------------------  1597

Query 2378  CAGATTCAACTGGGAAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCAC  2451
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598  ---------------AGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCAC  1656

Query 2452  AGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGT  2525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657  AGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGT  1730

Query 2526  ATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCT  2599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731  ATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCT  1804

Query 2600  GGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCA  2673
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1805  GGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCA  1878

Query 2674  GGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTT  2747
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1879  GGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTT  1952

Query 2748  CGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAG  2821
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953  CGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAG  2026

Query 2822  GGAACAGCACGACTGACAACAGTGACCAG  2850
            |||||||||||||||||||||||||||||
Sbjct 2027  GGAACAGCACGACTGACAACAGTGACCAG  2055

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