Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02531
Subject:
NM_001347534.1
Aligned Length:
2581
Identities:
2105
Gaps:
146

Alignment

Query    1  ATGTCGGTGGTGGGGTTGGACGTGGGCTCGCAGAGCTGCTACATCGCGGTAGCCCGGGCCGGGGGCATCGAGAC  74
            |||||||||||.|||.|.|||||.|||||.||||||||||||||.|||||.||.||||||||||||||||||||
Sbjct    1  ATGTCGGTGGTTGGGCTAGACGTAGGCTCACAGAGCTGCTACATTGCGGTGGCGCGGGCCGGGGGCATCGAGAC  74

Query   75  CATCGCCAATGAGTTCAGCGACCGGTGCACCCCGTCAGTCATATCATTTGGATCAAAAAATAGAACAATCGGAG  148
            |||||||||.||||||||||||||.|||||||||||||||||||||||||||||||||||.||||||||.||||
Sbjct   75  CATCGCCAACGAGTTCAGCGACCGCTGCACCCCGTCAGTCATATCATTTGGATCAAAAAACAGAACAATTGGAG  148

Query  149  TTGCAGCCAAAAATCAGCAAATCACTCATGCAAACAATACGGTGTCTAACTTCAAAAGATTTCATGGCCGAGCA  222
            |||||||||||||.|||||||||||||||||||||||||||||.||||.|||.||.||||||||||||.|||||
Sbjct  149  TTGCAGCCAAAAACCAGCAAATCACTCATGCAAACAATACGGTCTCTAGCTTTAAGAGATTTCATGGCAGAGCA  222

Query  223  TTCAATGACCCCTTCATTCAAAAGGAGAAGGAAAACTTGAGTTACGATTTGGTTCCATTGAAAAATGGTGGAGT  296
            ||||||||||||||||||||.|||||.|||||.|||.||||.||.||||||||.|||.|||||||||||||.||
Sbjct  223  TTCAATGACCCCTTCATTCAGAAGGAAAAGGAGAACCTGAGCTATGATTTGGTCCCAATGAAAAATGGTGGCGT  296

Query  297  TGGAATAAAGGTAATGTACATGGGTGAAGAACATCTATTTAGTGTGGAGCAGATAACAGCCATGTTGTTGACTA  370
            .|||||||||||.||||||||||.||||||||||.|.||.||||||||||||||||||||||||.||.||||||
Sbjct  297  GGGAATAAAGGTCATGTACATGGATGAAGAACATTTCTTCAGTGTGGAGCAGATAACAGCCATGCTGCTGACTA  370

Query  371  AGCTGAAGGAAACTGCTGAAAACAGCCTCAAGAAACCAGTAACAGATTGTGTTATTTCAGTCCCCTCCTTCTTT  444
            ||.|.|||||||||||.|||||||.|||||||||.|||||.|||||.|||||.||.||||||||.||||||||.
Sbjct  371  AGTTAAAGGAAACTGCAGAAAACAACCTCAAGAAGCCAGTGACAGACTGTGTCATCTCAGTCCCATCCTTCTTC  444

Query  445  ACAGATGCTGAGAGGCGATCTGTGTTAGATGCTGCACAGATTGTTGGCCTAAACTGTTTAAGACTTATGAATGA  518
            ||||||||||||.|..|.||||||.|.||||||||.||||||||.|||.|.|||||.||..|.||.||||||||
Sbjct  445  ACAGATGCTGAGCGAAGGTCTGTGCTGGATGCTGCGCAGATTGTGGGCTTGAACTGCTTGCGGCTCATGAATGA  518

Query  519  CATGACAGCTGTTGCTTTGAATTACGGAATTTATAAGCAGGATCTCCC--AAGCCTGGATGAGAAACCTCGGAT  590
            ||||||.|||||||||||||||||.||.|||||||||||.||||||||  |.|||  ||.|||||.||.|||.|
Sbjct  519  CATGACGGCTGTTGCTTTGAATTATGGGATTTATAAGCAAGATCTCCCGAATGCC--GAGGAGAAGCCACGGGT  590

Query  591  AGTGGTTTTTGTTGATATGGGACATTCAGCTTTTCAAGTGTCTGCTTGTGCTTTTAACAAGGGAAAATTGAAGG  664
            .|||||.||||||||.||||||||.|||.||||.|||||||||||.||||||||||||||.||||||.||||||
Sbjct  591  GGTGGTGTTTGTTGACATGGGACACTCATCTTTCCAAGTGTCTGCCTGTGCTTTTAACAAAGGAAAACTGAAGG  664

Query  665  TACTGGGAACAGCTTTTGATCCTTTCTTAGGAGGAAAAAACTTCGATGAAAAGTTAGTGGAACATTTTTGTGCA  738
            |.||.||.||||||||||||||.||||||||||||||.|||||.|||||.|||.||||.||||||||||||||.
Sbjct  665  TTCTAGGCACAGCTTTTGATCCCTTCTTAGGAGGAAAGAACTTTGATGAGAAGCTAGTAGAACATTTTTGTGCT  738

Query  739  GAATTTAAAACTAAGTACAAGTTGGATGCAAAATCCAAAATACGAGCACTCCTACGTCTGTATCAGGAATGTGA  812
            |||||||||||.||||||||.||||||||||||||||||||.|||||.|||||.|||||..|||||||.|||||
Sbjct  739  GAATTTAAAACCAAGTACAAATTGGATGCAAAATCCAAAATTCGAGCCCTCCTTCGTCTCCATCAGGAGTGTGA  812

Query  813  AAAACTGAAAAAGCTAATGAGCTCTAACAGCACAGACCTTCCACTGAATATCGAATGCTTTATGAATGATAAAG  886
            |||..||||||||||.|||||.|||||||||||.|||||.||.|||||.|||||.||||||||||||||.||.|
Sbjct  813  AAAGTTGAAAAAGCTCATGAGTTCTAACAGCACGGACCTGCCGCTGAACATCGAGTGCTTTATGAATGACAAGG  886

Query  887  ATGTTTCCGGAAAGATGAACAGGTCACAATTTGAAGAACTCTGTGCTGAACTTCTGCAAAAGATAGAAGTACCC  960
            ||||.||.||.|||||||||||||||||.|||||||||||.||||||||.||.||||||||.|||||.||.|||
Sbjct  887  ATGTCTCTGGGAAGATGAACAGGTCACAGTTTGAAGAACTGTGTGCTGAGCTCCTGCAAAAAATAGAGGTCCCC  960

Query  961  CTTTATTCACTGTTGGAACAAACTCATCTCAAAGTAGAAGATGTGAGTGCAGTTGAGATTGTTGGAGGCGCTAC  1034
            |||.|.||..||.|||.|||.|||||.|||||.|..||||||||||||||..|||||||.||.|||||.||.||
Sbjct  961  CTTCACTCGTTGATGGCACAGACTCAGCTCAAGGCTGAAGATGTGAGTGCCATTGAGATAGTGGGAGGTGCCAC  1034

Query 1035  ACGAATTCCAGCTGTGAAGGAAAGAATTGCCAAATTCTTTGGAAAAGATATTAGCACAACACTCAATGCAGATG  1108
            |.||||.|||||||||||.||||||||||||||.|||||||||||||||.|.|||||.||.|||||||||||.|
Sbjct 1035  AAGAATCCCAGCTGTGAAAGAAAGAATTGCCAAGTTCTTTGGAAAAGATGTCAGCACCACGCTCAATGCAGACG  1108

Query 1109  AAGCAGTAGCCAGAGGATGTGCATTACAGTGTGCAATACTTTCCCCGGCATTTAAAGTTAGAGAATTTTCCGTC  1182
            ||||.||.||||||||.||||||.|.|||||||||||.|||||.||||||||||||||||||||.||.||.|||
Sbjct 1109  AAGCTGTGGCCAGAGGCTGTGCACTGCAGTGTGCAATTCTTTCTCCGGCATTTAAAGTTAGAGAGTTCTCTGTC  1182

Query 1183  ACAGATGCAGTTCCTTTTCCAATATCTCTGATCTGGAACCATGATTCAGAAGATACTGAAGGTGTTCATGAAGT  1256
            ||.|||||||||||||||||||||||||||.||||||||||.||.||.|||||.||.||||||||.||.||.||
Sbjct 1183  ACCGATGCAGTTCCTTTTCCAATATCTCTGGTCTGGAACCACGACTCGGAAGAAACGGAAGGTGTGCACGAGGT  1256

Query 1257  CTTTAGTCGAAACCATGCTGCTCCTTTCTCCAAAGTTCTCACCTTTCTGAGAAGGGGGCCTTTTGAGCTAGAAG  1330
            .||.|||||.||||||||||||||||||||||||||.||||||||.||||||||||||||.|||||||||||||
Sbjct 1257  GTTCAGTCGGAACCATGCTGCTCCTTTCTCCAAAGTGCTCACCTTCCTGAGAAGGGGGCCCTTTGAGCTAGAAG  1330

Query 1331  CTTTCTATTCTGATCCCCAAGGAGTTCCATATCCAGAAGCAAAAATAGGCCGCTTTGTAGTTCAGAATGTTTCT  1404
            |||||||||||||.||.|||||||||||||||||||||||||||||||||||.|||||.|||||||||||||||
Sbjct 1331  CTTTCTATTCTGACCCTCAAGGAGTTCCATATCCAGAAGCAAAAATAGGCCGTTTTGTTGTTCAGAATGTTTCT  1404

Query 1405  GCACAGAAAGATGGAGAAAAATCTAGAGTAAAAGTCAAAGTGCGAGTCAACACCCATGGCATTTTCACCATCTC  1478
            |||||||||||||||||.||.||.|||||.||.|||||||||||.||.|||||.||||||||.|||||||||||
Sbjct 1405  GCACAGAAAGATGGAGAGAAGTCGAGAGTGAAGGTCAAAGTGCGTGTGAACACACATGGCATCTTCACCATCTC  1478

Query 1479  TACGGCATCTATGGTGGAGAAAGTCCCAACTGAGGAGAATGAAATGTCTTCT-----GAAGCTGACATGGAGTG  1547
            .|||||.||.|||||||||||.|||||.||.|||||..|.|  |||.||.||     ||.||.||||||||.||
Sbjct 1479  CACGGCTTCCATGGTGGAGAAGGTCCCGACCGAGGAAGAGG--ATGGCTCCTCTCTCGAGGCAGACATGGAATG  1550

Query 1548  TCTGAATCAGAGACCACCAGAAAACCCAGACACTGATAAAAATGTCCAGCAAGACAACAGTGAAGCTGGAACAC  1621
            ||..||.|||||.|||.||||                                         |||||       
Sbjct 1551  TCCAAACCAGAGGCCAACAGA-----------------------------------------AAGCT-------  1576

Query 1622  AGCCCCAGGTACAAACTGATGCTCAACAAACCTCACAGTCTCCCCCTTCACCTGAACTTACCTCAGAAGAAAAC  1695
                           |.||||                               ||                    
Sbjct 1577  ---------------CGGATG-------------------------------TG--------------------  1584

Query 1696  AAAATCCCAGATGCTGACAAAGCAAATGAAAAAAAAGTTGACCAGCCTCCAGAAGCTAAAAAGCCCAAAATAAA  1769
                     |||         |||||||||||.||||||||.||||||||||||||.||.||.||.||||||||
Sbjct 1585  ---------GAT---------GCAAATGAAAAGAAAGTTGATCAGCCTCCAGAAGCCAAGAAACCTAAAATAAA  1640

Query 1770  GGTGGTGAATGTTGAGCTGCCTATTGAAGCCAACTTGGTCTGGCAGTTAGGGAAAGACCTTCTTAACATGTATA  1843
            ||||||.|||||||||||||||.|.||||||||||||||.|||||||||||||.||||||||||||||||||||
Sbjct 1641  GGTGGTAAATGTTGAGCTGCCTGTAGAAGCCAACTTGGTATGGCAGTTAGGGAGAGACCTTCTTAACATGTATA  1714

Query 1844  TTGAGACAGAGGGTAAGATGATAATGCAAGATAAATTGGAAAAAGAAAGGAATGATGCTAAAAATGCAGTTGAG  1917
            |||||||||||||.||||||||.||||||||.||..||||.||.||..||||.||.||.||.||.||.||.|||
Sbjct 1715  TTGAGACAGAGGGCAAGATGATCATGCAAGACAAGCTGGAGAAGGAGCGGAACGACGCCAAGAACGCCGTGGAG  1788

Query 1918  GAATATGTGTATGAGTTCAGAGACAAGCTGTGTGGACCATATGAAAAATTTATATGTGAGCAGGATCATCAAAA  1991
            ||.|.|||.|||||||||||.||||||||.||||||||||||||.|||||.||||||||||||||.|||.|.||
Sbjct 1789  GAGTGTGTATATGAGTTCAGGGACAAGCTATGTGGACCATATGAGAAATTCATATGTGAGCAGGAACATGAGAA  1862

Query 1992  TTTTTTGAGACTCCTCACAGAAACTGAAGACTGGCTGTATGAAGAAGGAGAGGACCAAGCTAAACAAGCATATG  2065
            .||.|||||.||.||.|||||.||.|||||||||||||||||.|||||.||||||||.|||||.||.|||||..
Sbjct 1863  GTTCTTGAGGCTTCTAACAGAGACGGAAGACTGGCTGTATGAGGAAGGGGAGGACCAGGCTAAGCAGGCATACA  1936

Query 2066  TTGACAAGTTGGAAGAATTAATGAAAATTGGCACTCCAGTTAAAGTTCGGTTTCAGGAAGCTGAAGAACGGCCA  2139
            ||||||||||||||||..|.||||||||.||||||||.||||||||..|.|||||.||||||||.|||||.||.
Sbjct 1937  TTGACAAGTTGGAAGAGCTGATGAAAATGGGCACTCCTGTTAAAGTCAGATTTCAAGAAGCTGAGGAACGACCG  2010

Query 2140  AAAATGTTTGAAGAACTAGGACAGAGGCTGCAGCATTATGCCAAGATAGCAGCTGACTTCAGAAATAAGGATGA  2213
            |||.||||.||.||.||.||.|||.|.||||||||.|||||||||||.|||||.|||||||||...||||||||
Sbjct 2011  AAAGTGTTGGAGGAGCTGGGGCAGCGCCTGCAGCACTATGCCAAGATTGCAGCGGACTTCAGAGGCAAGGATGA  2084

Query 2214  GAAATACAACCATATTGATGAGTCTGAAATGAAAAAAGTGGAGAAGTCTGTTAATGAAGTGATGGAATGGATGA  2287
            ||||||||||||.||||||||.||.||||||||.||.||.|||||||||||||||||.||||||||.|||||||
Sbjct 2085  GAAATACAACCACATTGATGAATCAGAAATGAAGAAGGTTGAGAAGTCTGTTAATGAGGTGATGGAGTGGATGA  2158

Query 2288  ATAATGTCATGAATGCTCAGGCTAAAAAGAGTCTTGATCAGGATCCAGTTGTACGTGCTCAGGAAATTAAAACA  2361
            |||||||||||||||||||||||||||..|||||||||||.||.||.|||||.||..||||.|||||.|.|.|.
Sbjct 2159  ATAATGTCATGAATGCTCAGGCTAAAAGAAGTCTTGATCAAGACCCTGTTGTTCGAACTCATGAAATCAGAGCG  2232

Query 2362  AAAATCAAGGAATTGAACAACACATGTGAACCCGTTGTAACACAACCGAAACCAAAAATTGAATCACCCAAACT  2435
            ||..||||||||||||||||....||||||||.||||||||.|||||.|||||||||||.||.|||||.|||||
Sbjct 2233  AAGGTCAAGGAATTGAACAATGTTTGTGAACCTGTTGTAACTCAACCCAAACCAAAAATCGAGTCACCTAAACT  2306

Query 2436  GGAAAGAACTCCAAATGGCCCAAATATTGATAAAAAGGAAGAAGATTTAGAAGACAAAAACAATTTTGGTGCTG  2509
            |||.|||||||||||||||||||||||||   |.|||.|||||||||||||||.||||||.|||.|||||||||
Sbjct 2307  GGAGAGAACTCCAAATGGCCCAAATATTG---ACAAGAAAGAAGATTTAGAAGGCAAAAATAATCTTGGTGCTG  2377

Query 2510  AACCTCCACATCAGAATGGTGAATGTTACCCTAATGAGAAAAATTCTGTTAATATGGACTTGGAC  2574
            ||.||||.|||||||||||||||||..|||||||||||||....|||||.||.||||||.|||||
Sbjct 2378  AAGCTCCGCATCAGAATGGTGAATGCCACCCTAATGAGAAGGGCTCTGTCAACATGGACCTGGAC  2442

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