Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02531
Subject:
XM_006504915.3
Aligned Length:
2581
Identities:
1973
Gaps:
293

Alignment

Query    1  ATGTCGGTGGTGGGGTTGGACGTGGGCTCGCAGAGCTGCTACATCGCGGTAGCCCGGGCCGGGGGCATCGAGAC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CATCGCCAATGAGTTCAGCGACCGGTGCACCCCGTCAGTCATATCATTTGGATCAAAAAATAGAACAATCGGAG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TTGCAGCCAAAAATCAGCAAATCACTCATGCAAACAATACGGTGTCTAACTTCAAAAGATTTCATGGCCGAGCA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TTCAATGACCCCTTCATTCAAAAGGAGAAGGAAAACTTGAGTTACGATTTGGTTCCATTGAAAAATGGTGGAGT  296
                                                                     .|||||||||||||.||
Sbjct    1  ---------------------------------------------------------ATGAAAAATGGTGGCGT  17

Query  297  TGGAATAAAGGTAATGTACATGGGTGAAGAACATCTATTTAGTGTGGAGCAGATAACAGCCATGTTGTTGACTA  370
            .|||||||||||.||||||||||.||||||||||.|.||.||||||||||||||||||||||||.||.||||||
Sbjct   18  GGGAATAAAGGTCATGTACATGGATGAAGAACATTTCTTCAGTGTGGAGCAGATAACAGCCATGCTGCTGACTA  91

Query  371  AGCTGAAGGAAACTGCTGAAAACAGCCTCAAGAAACCAGTAACAGATTGTGTTATTTCAGTCCCCTCCTTCTTT  444
            ||.|.|||||||||||.|||||||.|||||||||.|||||.|||||.|||||.||.||||||||.||||||||.
Sbjct   92  AGTTAAAGGAAACTGCAGAAAACAACCTCAAGAAGCCAGTGACAGACTGTGTCATCTCAGTCCCATCCTTCTTC  165

Query  445  ACAGATGCTGAGAGGCGATCTGTGTTAGATGCTGCACAGATTGTTGGCCTAAACTGTTTAAGACTTATGAATGA  518
            ||||||||||||.|..|.||||||.|.||||||||.||||||||.|||.|.|||||.||..|.||.||||||||
Sbjct  166  ACAGATGCTGAGCGAAGGTCTGTGCTGGATGCTGCGCAGATTGTGGGCTTGAACTGCTTGCGGCTCATGAATGA  239

Query  519  CATGACAGCTGTTGCTTTGAATTACGGAATTTATAAGCAGGATCTCCC--AAGCCTGGATGAGAAACCTCGGAT  590
            ||||||.|||||||||||||||||.||.|||||||||||.||||||||  |.|||  ||.|||||.||.|||.|
Sbjct  240  CATGACGGCTGTTGCTTTGAATTATGGGATTTATAAGCAAGATCTCCCGAATGCC--GAGGAGAAGCCACGGGT  311

Query  591  AGTGGTTTTTGTTGATATGGGACATTCAGCTTTTCAAGTGTCTGCTTGTGCTTTTAACAAGGGAAAATTGAAGG  664
            .|||||.||||||||.||||||||.|||.||||.|||||||||||.||||||||||||||.||||||.||||||
Sbjct  312  GGTGGTGTTTGTTGACATGGGACACTCATCTTTCCAAGTGTCTGCCTGTGCTTTTAACAAAGGAAAACTGAAGG  385

Query  665  TACTGGGAACAGCTTTTGATCCTTTCTTAGGAGGAAAAAACTTCGATGAAAAGTTAGTGGAACATTTTTGTGCA  738
            |.||.||.||||||||||||||.||||||||||||||.|||||.|||||.|||.||||.||||||||||||||.
Sbjct  386  TTCTAGGCACAGCTTTTGATCCCTTCTTAGGAGGAAAGAACTTTGATGAGAAGCTAGTAGAACATTTTTGTGCT  459

Query  739  GAATTTAAAACTAAGTACAAGTTGGATGCAAAATCCAAAATACGAGCACTCCTACGTCTGTATCAGGAATGTGA  812
            |||||||||||.||||||||.||||||||||||||||||||.|||||.|||||.|||||..|||||||.|||||
Sbjct  460  GAATTTAAAACCAAGTACAAATTGGATGCAAAATCCAAAATTCGAGCCCTCCTTCGTCTCCATCAGGAGTGTGA  533

Query  813  AAAACTGAAAAAGCTAATGAGCTCTAACAGCACAGACCTTCCACTGAATATCGAATGCTTTATGAATGATAAAG  886
            |||..||||||||||.|||||.|||||||||||.|||||.||.|||||.|||||.||||||||||||||.||.|
Sbjct  534  AAAGTTGAAAAAGCTCATGAGTTCTAACAGCACGGACCTGCCGCTGAACATCGAGTGCTTTATGAATGACAAGG  607

Query  887  ATGTTTCCGGAAAGATGAACAGGTCACAATTTGAAGAACTCTGTGCTGAACTTCTGCAAAAGATAGAAGTACCC  960
            ||||.||.||.|||||||||||||||||.|||||||||||.||||||||.||.||||||||.|||||.||.|||
Sbjct  608  ATGTCTCTGGGAAGATGAACAGGTCACAGTTTGAAGAACTGTGTGCTGAGCTCCTGCAAAAAATAGAGGTCCCC  681

Query  961  CTTTATTCACTGTTGGAACAAACTCATCTCAAAGTAGAAGATGTGAGTGCAGTTGAGATTGTTGGAGGCGCTAC  1034
            |||.|.||..||.|||.|||.|||||.|||||.|..||||||||||||||..|||||||.||.|||||.||.||
Sbjct  682  CTTCACTCGTTGATGGCACAGACTCAGCTCAAGGCTGAAGATGTGAGTGCCATTGAGATAGTGGGAGGTGCCAC  755

Query 1035  ACGAATTCCAGCTGTGAAGGAAAGAATTGCCAAATTCTTTGGAAAAGATATTAGCACAACACTCAATGCAGATG  1108
            |.||||.|||||||||||.||||||||||||||.|||||||||||||||.|.|||||.||.|||||||||||.|
Sbjct  756  AAGAATCCCAGCTGTGAAAGAAAGAATTGCCAAGTTCTTTGGAAAAGATGTCAGCACCACGCTCAATGCAGACG  829

Query 1109  AAGCAGTAGCCAGAGGATGTGCATTACAGTGTGCAATACTTTCCCCGGCATTTAAAGTTAGAGAATTTTCCGTC  1182
            ||||.||.||||||||.||||||.|.|||||||||||.|||||.||||||||||||||||||||.||.||.|||
Sbjct  830  AAGCTGTGGCCAGAGGCTGTGCACTGCAGTGTGCAATTCTTTCTCCGGCATTTAAAGTTAGAGAGTTCTCTGTC  903

Query 1183  ACAGATGCAGTTCCTTTTCCAATATCTCTGATCTGGAACCATGATTCAGAAGATACTGAAGGTGTTCATGAAGT  1256
            ||.|||||||||||||||||||||||||||.||||||||||.||.||.|||||.||.||||||||.||.||.||
Sbjct  904  ACCGATGCAGTTCCTTTTCCAATATCTCTGGTCTGGAACCACGACTCGGAAGAAACGGAAGGTGTGCACGAGGT  977

Query 1257  CTTTAGTCGAAACCATGCTGCTCCTTTCTCCAAAGTTCTCACCTTTCTGAGAAGGGGGCCTTTTGAGCTAGAAG  1330
            .||.|||||.||||||||||||||||||||||||||.||||||||.||||||||||||||.|||||||||||||
Sbjct  978  GTTCAGTCGGAACCATGCTGCTCCTTTCTCCAAAGTGCTCACCTTCCTGAGAAGGGGGCCCTTTGAGCTAGAAG  1051

Query 1331  CTTTCTATTCTGATCCCCAAGGAGTTCCATATCCAGAAGCAAAAATAGGCCGCTTTGTAGTTCAGAATGTTTCT  1404
            |||||||||||||.||.|||||||||||||||||||||||||||||||||||.|||||.|||||||||||||||
Sbjct 1052  CTTTCTATTCTGACCCTCAAGGAGTTCCATATCCAGAAGCAAAAATAGGCCGTTTTGTTGTTCAGAATGTTTCT  1125

Query 1405  GCACAGAAAGATGGAGAAAAATCTAGAGTAAAAGTCAAAGTGCGAGTCAACACCCATGGCATTTTCACCATCTC  1478
            |||||||||||||||||.||.||.|||||.||.|||||||||||.||.|||||.||||||||.|||||||||||
Sbjct 1126  GCACAGAAAGATGGAGAGAAGTCGAGAGTGAAGGTCAAAGTGCGTGTGAACACACATGGCATCTTCACCATCTC  1199

Query 1479  TACGGCATCTATGGTGGAGAAAGTCCCAACTGAGGAGAATGAAATGTCTTCT-----GAAGCTGACATGGAGTG  1547
            .|||||.||.|||||||||||.|||||.||.|||||..|.|  |||.||.||     ||.||.||||||||.||
Sbjct 1200  CACGGCTTCCATGGTGGAGAAGGTCCCGACCGAGGAAGAGG--ATGGCTCCTCTCTCGAGGCAGACATGGAATG  1271

Query 1548  TCTGAATCAGAGACCACCAGAAAACCCAGACACTGATAAAAATGTCCAGCAAGACAACAGTGAAGCTGGAACAC  1621
            ||..||.|||||.|||.||||||.|.|.||....|||||||||.||||||||||||||||||||||||||||||
Sbjct 1272  TCCAAACCAGAGGCCAACAGAAAGCTCGGATGTGGATAAAAATATCCAGCAAGACAACAGTGAAGCTGGAACAC  1345

Query 1622  AGCCCCAGGTACAAACTGATGCTCAACAAACCTCACAGTCTCCCCCTTCACCTGAACTTACCTCAGAAGAAAAC  1695
            |||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 1346  AGCCCCAGGTACAAACTGATGGTCAACAAACCTCACAGTCTCCCCCTTCACCTGAACTTACCTCAGAAGAAAGC  1419

Query 1696  AAAATCCCAGATGCTGACAAAGCAAATGAAAAAAAAGTTGACCAGCCTCCAGAAGCTAAAAAGCCCAAAATAAA  1769
            ||||.|||||||||||||||||||||||||||.||||||||.||||||||||||||.||.||.||.||||||||
Sbjct 1420  AAAACCCCAGATGCTGACAAAGCAAATGAAAAGAAAGTTGATCAGCCTCCAGAAGCCAAGAAACCTAAAATAAA  1493

Query 1770  GGTGGTGAATGTTGAGCTGCCTATTGAAGCCAACTTGGTCTGGCAGTTAGGGAAAGACCTTCTTAACATGTATA  1843
            ||||||.|||||||||||||||.|.||||||||||||||.|||||||||||||.||||||||||||||||||||
Sbjct 1494  GGTGGTAAATGTTGAGCTGCCTGTAGAAGCCAACTTGGTATGGCAGTTAGGGAGAGACCTTCTTAACATGTATA  1567

Query 1844  TTGAGACAGAGGGTAAGATGATAATGCAAGATAAATTGGAAAAAGAAAGGAATGATGCTAAAAATGCAGTTGAG  1917
            |||||||||||||.||||||||.||||||||.||..||||.||.||..||||.||.||.||.||.||.||.|||
Sbjct 1568  TTGAGACAGAGGGCAAGATGATCATGCAAGACAAGCTGGAGAAGGAGCGGAACGACGCCAAGAACGCCGTGGAG  1641

Query 1918  GAATATGTGTATGAGTTCAGAGACAAGCTGTGTGGACCATATGAAAAATTTATATGTGAGCAGGATCATCAAAA  1991
            ||.|.|||.|||||||||||.||||||||.||||||||||||||.|||||.||||||||||||||.|||.|.||
Sbjct 1642  GAGTGTGTATATGAGTTCAGGGACAAGCTATGTGGACCATATGAGAAATTCATATGTGAGCAGGAACATGAGAA  1715

Query 1992  TTTTTTGAGACTCCTCACAGAAACTGAAGACTGGCTGTATGAAGAAGGAGAGGACCAAGCTAAACAAGCATATG  2065
            .||.|||||.||.||.|||||.||.|||||||||||||||||.|||||.||||||||.|||||.||.|||||..
Sbjct 1716  GTTCTTGAGGCTTCTAACAGAGACGGAAGACTGGCTGTATGAGGAAGGGGAGGACCAGGCTAAGCAGGCATACA  1789

Query 2066  TTGACAAGTTGGAAGAATTAATGAAAATTGGCACTCCAGTTAAAGTTCGGTTTCAGGAAGCTGAAGAACGGCCA  2139
            ||||||||||||||||..|.||||||||.||||||||.||||||||..|.|||||.||||||||.|||||.||.
Sbjct 1790  TTGACAAGTTGGAAGAGCTGATGAAAATGGGCACTCCTGTTAAAGTCAGATTTCAAGAAGCTGAGGAACGACCG  1863

Query 2140  AAAATGTTTGAAGAACTAGGACAGAGGCTGCAGCATTATGCCAAGATAGCAGCTGACTTCAGAAATAAGGATGA  2213
            |||.||||.||.||.||.||.|||.|.||||||||.|||||||||||.|||||.|||||||||...||||||||
Sbjct 1864  AAAGTGTTGGAGGAGCTGGGGCAGCGCCTGCAGCACTATGCCAAGATTGCAGCGGACTTCAGAGGCAAGGATGA  1937

Query 2214  GAAATACAACCATATTGATGAGTCTGAAATGAAAAAAGTGGAGAAGTCTGTTAATGAAGTGATGGAATGGATGA  2287
            ||||||||||||.||||||||.||.||||||||.||.||.|||||||||||||||||.||||||||.|||||||
Sbjct 1938  GAAATACAACCACATTGATGAATCAGAAATGAAGAAGGTTGAGAAGTCTGTTAATGAGGTGATGGAGTGGATGA  2011

Query 2288  ATAATGTCATGAATGCTCAGGCTAAAAAGAGTCTTGATCAGGATCCAGTTGTACGTGCTCAGGAAATTAAAACA  2361
            |||||||||||||||||||||||||||..|||||||||||.||.||.|||||.||..||||.|||||.|.|.|.
Sbjct 2012  ATAATGTCATGAATGCTCAGGCTAAAAGAAGTCTTGATCAAGACCCTGTTGTTCGAACTCATGAAATCAGAGCG  2085

Query 2362  AAAATCAAGGAATTGAACAACACATGTGAACCCGTTGTAACACAACCGAAACCAAAAATTGAATCACCCAAACT  2435
            ||..||||||||||||||||....||||||||.||||||||.|||||.|||||||||||.||.|||||.|||||
Sbjct 2086  AAGGTCAAGGAATTGAACAATGTTTGTGAACCTGTTGTAACTCAACCCAAACCAAAAATCGAGTCACCTAAACT  2159

Query 2436  GGAAAGAACTCCAAATGGCCCAAATATTGATAAAAAGGAAGAAGATTTAGAAGACAAAAACAATTTTGGTGCTG  2509
            |||.|||||||||||||||||||||||||   |.|||.|||||||||||||||.||||||.|||.|||||||||
Sbjct 2160  GGAGAGAACTCCAAATGGCCCAAATATTG---ACAAGAAAGAAGATTTAGAAGGCAAAAATAATCTTGGTGCTG  2230

Query 2510  AACCTCCACATCAGAATGGTGAATGTTACCCTAATGAGAAAAATTCTGTTAATATGGACTTGGAC  2574
            ||.||||.|||||||||||||||||..|||||||||||||....|||||.||.||||||.|||||
Sbjct 2231  AAGCTCCGCATCAGAATGGTGAATGCCACCCTAATGAGAAGGGCTCTGTCAACATGGACCTGGAC  2295

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