Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_03028
Subject:
NR_029425.1
Aligned Length:
2414
Identities:
1008
Gaps:
1279

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGTTCTTCAGCCTCGTTCCCGGGTAGTATAAAGATTGCAGTCTCCTTTGTTCGCCCTCGTTGCGCAGTCGTCCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCGTCATTTCTGTTCCGTTCTGAAAATCGGTAGCTGTCACTGGTGCGGCGCTGCTCGGGAGGTCCGGTCGGCG  148

Query    1  ------------------------------------------------------------ATGGTTGAAGCAGA  14
                                                                        ||||||||||||||
Sbjct  149  AGCTCAGAGGAGCTTGAGACCGTCGCAGTCCCCTCGGACCCCCATCGGTTAAGAGGAAAAATGGTTGAAGCAGA  222

Query   15  TCGCCCAGGAAAGCTCTTCATTGGTGGGCTTAATACGGAAACAAATGAGAAAGCTCTTGAAGCAGTATTTGGCA  88
            ||||||||||||||||||.|||||||||||||||||.||.||.|||||||||||.|||||.|||||.|||||||
Sbjct  223  TCGCCCAGGAAAGCTCTTTATTGGTGGGCTTAATACAGAGACGAATGAGAAAGCCCTTGAGGCAGTGTTTGGCA  296

Query   89  AATATGGACGAATAGTGGAAGTACTCTTGATGAAAGACCGTGAAACCAACAAATCAAGAGGATTTGCTTTTGTC  162
            ||||||||||||||||||||||.||.||||||||.|||||.|||||.||.||.|||||||||||.|||||||||
Sbjct  297  AATATGGACGAATAGTGGAAGTTCTTTTGATGAAGGACCGAGAAACGAATAAGTCAAGAGGATTCGCTTTTGTC  370

Query  163  ACCTTTGAAAGCCCAGCAGACGCTAAGGATGCAGCCAGAGACATGAATGGAAAGTCATTAGATGGAAAAGCCAT  236
            ||.|||||||||||||||||.||.||||||||.|||||||||||||||||||||||.||||||||.||||||||
Sbjct  371  ACTTTTGAAAGCCCAGCAGATGCAAAGGATGCTGCCAGAGACATGAATGGAAAGTCCTTAGATGGGAAAGCCAT  444

Query  237  CAAGGTGGAACAAGCCACCAAACCATCATTTGAAAGTGGTAGACGTGGACCGCCTCCACCTCCAAGAAGTAGAG  310
            |||||||||.||||||||||||||||||||||||||||||||||||||||..||.||||||||||||||.||||
Sbjct  445  CAAGGTGGAGCAAGCCACCAAACCATCATTTGAAAGTGGTAGACGTGGACTACCCCCACCTCCAAGAAGCAGAG  518

Query  311  GCCCTCCAAGAGGTCTTAGAGGTGGAAGAGGAGGAAGTGGAGGAACCAGGGGACCTCCCTCACGGGGAGGACAC  384
            |||||||.|||||||||.||||.||||||||||||||||||||||||||.|||||.|||||.||||||||||||
Sbjct  519  GCCCTCCCAGAGGTCTTCGAGGAGGAAGAGGAGGAAGTGGAGGAACCAGAGGACCCCCCTCCCGGGGAGGACAC  592

Query  385  ATGGATGACGGTGGATATTCCATGAATTTTAACATGAGTTCTTCCAGGGGACCACTCCCAGTAAAAAGAGGACC  458
            ||||||||.|||||.||.|||||||||||||.|||||||||||||||.|||||.||.|||||||||.|||||||
Sbjct  593  ATGGATGATGGTGGCTACTCCATGAATTTTACCATGAGTTCTTCCAGAGGACCTCTGCCAGTAAAACGAGGACC  666

Query  459  ACCACCAAGAAGTGGGGGTCCTCCTCCTAAGAGATCTGCACCTTCAGGACCAGTTCGCAGTAGCAGTGGAATGG  532
            |||||||.|||||||.||||||||||||||.|||||.||||||||.|||||||||||.||.|||||||||.|||
Sbjct  667  ACCACCACGAAGTGGAGGTCCTCCTCCTAAAAGATCAGCACCTTCTGGACCAGTTCGTAGCAGCAGTGGACTGG  740

Query  533  GAGGAAGAGCTCCTGTATCACGTGGAAGAGATAGTTATGGAGGTCCACCTCGAAGGGAACCGCTGCCCTCTCGT  606
            ||||||||||.|||||.||.||||||||||||.||||.|||||.||.||.||||||||.||.|||||.|||||.
Sbjct  741  GAGGAAGAGCCCCTGTGTCCCGTGGAAGAGATGGTTACGGAGGCCCGCCACGAAGGGAGCCCCTGCCTTCTCGA  814

Query  607  AGAGATGTTTATTTGTCCCCAAGAGATGATGGGTATTCTACTAAAGACAGCTATTCAAGCAGAGATTACCCAAG  680
            ||||||||||||||||||||.|||||||||||.|||||.||||||||||||||||||||||||||.||.|||||
Sbjct  815  AGAGATGTTTATTTGTCCCCGAGAGATGATGGATATTCCACTAAAGACAGCTATTCAAGCAGAGAATATCCAAG  888

Query  681  TTCTCGTGATACTAGAGATTATGCACCACCACCACGAGATTATACTTACCGTGATTATGGTCATTCCAGTTCAC  754
            ||||||.|||||..||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct  889  TTCTCGAGATACACGAGATTATGCACCACCACCAAGAGATTATACTTACCGTGATTATGGTCATTCCAGTTCAC  962

Query  755  GTGATGACTATCCATCAAGAGGATATAGCGATAGAGATGGATATGGTCGTGATCGTGACTATTCAGATCATCCA  828
            |.||||||||||||||||||||.|||||.|||||||||||.||||||||.|||||.||||||||||||||||||
Sbjct  963  GAGATGACTATCCATCAAGAGGCTATAGTGATAGAGATGGCTATGGTCGGGATCGGGACTATTCAGATCATCCA  1036

Query  829  AGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATGG------------------------------------  866
            |||||||||||||||||||||||.||||||||||||||                                    
Sbjct 1037  AGTGGAGGTTCCTACAGAGATTCGTATGAGAGTTATGGTTGAATCTAATGGTCATACTGTCCTGGAGTGCTGAT  1110

Query  867  ----TAACTCAC-GTAG----------------------------TGCTC-------------CACCTACACGA  894
                |.|.|||| ||||                            |||||             ||       ||
Sbjct 1111  TGATTGATTCACAGTAGATAAAGCTGGCAGTAAGGAACAATCAGATGCTCAGAGTTGCTGAAGCA-------GA  1177

Query  895  GG--------------GCCCCCGC------------------CATC--------TTATGGTGGAAGCAGTCGCT  928
            ||              |||.|.||                  ||||        || ||||..|.|||.|.|.|
Sbjct 1178  GGAACGCTGAGACTAAGCCACAGCAGTTGCTTACCCAGTGCGCATCAGAATTGGTT-TGGTACAGGCAATAGTT  1250

Query  929  ---------------------------------ATGATGATTACA-----------------------------  940
                                             |.||||||||.|                             
Sbjct 1251  TGTTTTTTTTTTTTTTTTGTCTTCAAGGGAGGGAGGATGATTAAACCGAATCAGTGCTTGTTAATCCTTAATTA  1324

Query  941  -------GCAGCTCAC-------------------GTGACGGATA-----TGGTGGAAGTCGAGACAGTTACTC  983
                   ||| .||||                   |.||.|||.|     ||||  ||||.|||..|..|||.|
Sbjct 1325  GGGAGTGGCA-ATCACTTAAAACTGACCCAATGGAGAGAGGGAGACTAATTGGT--AAGTGGAGGTACCTACCC  1395

Query  984  AAGCAG--CCGAAGTGATCTCT--------ACTCAAGTGGTCGTGATCGGGTTGGCAGACAAGAAAGAGGGC--  1045
            |||.||  |.|  |||| ||||        |.|||    |||||  |||    ||||   |||..|.|||||  
Sbjct 1396  AAGAAGTTCGG--GTGA-CTCTTTGTAGACATTCA----GTCGT--TCG----GGCA---AAGTCATAGGGCAA  1453

Query 1046  ---------TTCCCCCTTCT------------------ATGGAAAG----GGGGTACCCT---CCTCCA-CGTG  1084
                     |||...||..|                  ||.|||.|    ||||    ||   .||||| .|||
Sbjct 1454  CTCTGCAATTTCGAGCTGATGATCACTGAGAGAAGAACATTGAATGAGCTGGGG----CTGTAACTCCATGGTG  1523

Query 1085  A-----TTCCTA--CAGCAG-----------TTCAAGCC---GC-GGAGCAC-CAA------------------  1117
            |     |.||||  ||.|||           |||||.||   || ||| ||| |||                  
Sbjct 1524  AGTGCTTGCCTAAGCACCAGTGAGGCTAGCATTCAACCCCTGGCAGGA-CACACAAACATTTCAGTCAGAAAAA  1596

Query 1118  ------------GAGGTGGTGGCC--GTGGAGGAA----GCC-GATCTG--------AT---------------  1149
                        .|.|| .||.||  .|.||.|||    ||| .|||.|        ||               
Sbjct 1597  TTATACCTCACTCATGT-CTGACCCATTTGATGAATTTTGCCTCATCAGTAGGAAACATTATTAGTTGTCTTGT  1669

Query 1150  -------AGAGGGGGAGGCAGAAGCAGATAC-------------------------------------------  1173
                   |||.|||||   |||| ||| |.|                                           
Sbjct 1670  AAAACTAAGAAGGGGA---AGAA-CAG-TGCTGGGAAATGAAAGTCAAAACTGGCAACGTTAGGCTAGTTAGGA  1738

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1739  AAACATATTGGGAACAAAAATAGGTCACTAGGTCACTGTGGTTTTATAAAAGGTACTTTACCCTCAGGGCTCCA  1812

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1813  TCTTGGAAACAAACCATGAAGCTATAACTCTAGTTTACTGCTTTGGAAACTCAGCCAGTAATGTGAACGCAGAT  1886

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1887  AATCTCAACAGAAGCGGGTTGAGTTTTAGAGTCAAAGAATTTAACTCCACTTGTGAGATTTTTCTTACGAATTT  1960

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1961  GTTACAGTGCTGTTGAGGGGATTTCAAGCCTTTCGTCCTCTAATCAGGCCCGGAGTAGGTTCTGCTGTCAAGAC  2034

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 2035  CTTTAGCTCGTGACATTTTATATGCATTTTTTAGTTTGTCATGGGCAATATTACACTAAATATGAATGTTAAAT  2108

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 2109  TCAAAGTGGGAAGTTGGTAGAAAATTTCAAGAGACTTTTTTGACAAGTGGTAGAATATAGAACTAGCAGGTCTA  2182

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 2183  AAATCTGCAATTAGAAAAAAAAAATTAGCCTTGATTCTTCTGGCTAAACTCTGGTTGTAGAAGAATTTGAATAA  2256

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 2257  TACACAAAGTGCTGTGGTTTATTTGGTAGCTGGATGTAGAACATTATAGATCATTTATTTATTTATTTATTTAT  2330

Query 1174  ----------------------------------------------  1173
                                                          
Sbjct 2331  TTTGGAATGTTTTGTATTGAAGCCCAATAAAACTTGAATGTGTGTC  2376

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