Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_03028
Subject:
XR_878098.2
Aligned Length:
3632
Identities:
1095
Gaps:
2459

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGTTCTTCAGCCTCGTTCCCGGGTAGTATAAAGATTGCAGTCTCCTTTGTTCGCCCTCGTTGCGCAGTCGTCCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCGTCATTTCTGTTCCGTTCTGAAAATCGGTAGCTGTCACTGGTGCGGCGCTGCTCGGGAGGTCCGGTCGGCG  148

Query    1  ---------------------------------------------------------------ATGGTTGAAGC  11
                                                                           |||||||||||
Sbjct  149  AGCTCAGAGGAGCTTGAGACCGTCGCAGTCCCCTCGGCAGACCCCCATCGGTTAAGAGGAAAAATGGTTGAAGC  222

Query   12  AGATCGCCCAGGAAAGCTCTTCATTGGTGGGCTTAATACGGAAACAAATGAGAAAGCTCTTGAAGCAGTATTTG  85
            |||||||||||||||||||||.|||||||||||||||||.||.||.|||||||||||.|||||.|||||.||||
Sbjct  223  AGATCGCCCAGGAAAGCTCTTTATTGGTGGGCTTAATACAGAGACGAATGAGAAAGCCCTTGAGGCAGTGTTTG  296

Query   86  GCAAATATGGACGAATAGTGGAAGTACTCTTGATGAAAGACCGTGAAACCAACAAATCAAGAGGATTTGCTTTT  159
            |||||||||||||||||||||||||.||.||||||||.|||||.|||||.||.||.|||||||||||.||||||
Sbjct  297  GCAAATATGGACGAATAGTGGAAGTTCTTTTGATGAAGGACCGAGAAACGAATAAGTCAAGAGGATTCGCTTTT  370

Query  160  GTCACCTTTGAAAGCCCAGCAGACGCTAAGGATGCAGCCAGAGACATGAATGGAAAGTCATTAGATGGAAAAGC  233
            |||||.|||||||||||||||||.||.||||||||.|||||||||||||||||||||||.||||||||.|||||
Sbjct  371  GTCACTTTTGAAAGCCCAGCAGATGCAAAGGATGCTGCCAGAGACATGAATGGAAAGTCCTTAGATGGGAAAGC  444

Query  234  CATCAAGGTGGAACAAGCCACCAAACCATCATTTGAAAGTGGTAGACGTGGACCGCCTCCACCTCCAAGAAGTA  307
            ||||||||||||.||||||||||||||||||||||||||||||||||||||||..||.||||||||||||||.|
Sbjct  445  CATCAAGGTGGAGCAAGCCACCAAACCATCATTTGAAAGTGGTAGACGTGGACTACCCCCACCTCCAAGAAGCA  518

Query  308  GAGGCCCTCCAAGAGGTCTTAGAGGTGGAAGAGGAGGAAGTGGAGGAACCAGGGGACCTCCCTCACGGGGAGGA  381
            ||||||||||.|||||||||.||||.||||||||||||||||||||||||||.|||||.|||||.|||||||||
Sbjct  519  GAGGCCCTCCCAGAGGTCTTCGAGGAGGAAGAGGAGGAAGTGGAGGAACCAGAGGACCCCCCTCCCGGGGAGGA  592

Query  382  CACATGGATGACGGTGGATATTCCATGAATTTTAACATGAGTTCTTCCAGGGGACCACTCCCAGTAAAAAGAGG  455
            |||||||||||.|||||.||.|||||||||||||.|||||||||||||||.|||||.||.|||||||||.||||
Sbjct  593  CACATGGATGATGGTGGCTACTCCATGAATTTTACCATGAGTTCTTCCAGAGGACCTCTGCCAGTAAAACGAGG  666

Query  456  ACCACCACCAAGAAGTGGGGGTCCTCCTCCTAAGAGATCTGCACCTTCAGGACCAGTTCGCAGTAGCAGTGGAA  529
            ||||||||||.|||||||.||||||||||||||.|||||.||||||||.|||||||||||.||.|||||||||.
Sbjct  667  ACCACCACCACGAAGTGGAGGTCCTCCTCCTAAAAGATCAGCACCTTCTGGACCAGTTCGTAGCAGCAGTGGAC  740

Query  530  TGGGAGGAAGAGCTCCTGTATCACGTGGAAGAGATAGTTATGGAGGTCCACCTCGAAGGGAACCGCTGCCCTCT  603
            |||||||||||||.|||||.||.||||||||||||.||||.|||||.||.||.||||||||.||.|||||.|||
Sbjct  741  TGGGAGGAAGAGCCCCTGTGTCCCGTGGAAGAGATGGTTACGGAGGCCCGCCACGAAGGGAGCCCCTGCCTTCT  814

Query  604  CGTAGAGATGTTTATTTGTCCCCAAGAGATGATGGGTATTCTACTAAAGACAGCTATTCAAGCAGAGATTACCC  677
            ||.||||||||||||||||||||.|||||||||||.|||||.||||||||||||||||||||||||||.||.||
Sbjct  815  CGAAGAGATGTTTATTTGTCCCCGAGAGATGATGGATATTCCACTAAAGACAGCTATTCAAGCAGAGAATATCC  888

Query  678  AAGTTCTCGTGATACTAGAGATTATGCACCACCACCACGAGATTATACTTACCGTGATTATGGTCATTCCAGTT  751
            |||||||||.|||||..||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct  889  AAGTTCTCGAGATACACGAGATTATGCACCACCACCAAGAGATTATACTTACCGTGATTATGGTCATTCCAGTT  962

Query  752  CACGTGATGACTATCCATCAAGAGGATATAGCGATAGAGATGGATATGGTCGTGATCGTGACTATTCAGATCAT  825
            ||||.||||||||||||||||||||.|||||.|||||||||||.||||||||.|||||.|||||||||||||||
Sbjct  963  CACGAGATGACTATCCATCAAGAGGCTATAGTGATAGAGATGGCTATGGTCGGGATCGGGACTATTCAGATCAT  1036

Query  826  CCAAGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATGGTAACTCACGTAGTGCTCCACCTACACGAGGGCC  899
            ||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CCAAGTGGAGGTTCCTACAGAGATTCGTATGAGAGTTATGGTAACTCACGTAGTGCTCCACCTACACGAGGGCC  1110

Query  900  CCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGTGACGGATATGGTGGAAGTCGAG  973
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGTGACGGATATGGTGGAAGTCGAG  1184

Query  974  ACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGGGTTGGCAGACAAGAAAGAGGGCTT  1047
            |||||||||||||||||||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||
Sbjct 1185  ACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGCGTGGGCAGACAAGAAAGAGGGCTT  1258

Query 1048  CCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAAGAGG  1121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAAGAGG  1332

Query 1122  TGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATAC----------------------  1173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||                      
Sbjct 1333  TGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATACTAGGAACAAACAAAACTTTTGG  1406

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1407  ACCAAAAAAATCCCCATTCAAAGCAACAAACAAAAGTGGAAACTTTCTGTCATAAACTACCCAAGGACTACTAA  1480

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1481  AAGGAAAAATTGTGTTACCTTTTTAAAATTTCCTGTTCCCTTTTAATAATTTTTATGTTCTTGTGAGGGAAAAA  1554

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1555  GTAAGACGTGTTTAATTTTATTTGCTAGTATGAGCTGCTTTCAACAAGCAAATGGTAGATGTGTGAGCCTTGAC  1628

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1629  TTGTTCCTAGTGTTGTAATTTTCCAAGTGAAAGTGTCCCTGAAGGCCAGCCACTTCCTGATTTTTTTCCCCAGT  1702

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1703  AAATGAGGCAAGCAACCCCAAGATCATCCACAAACTTCCAGCCATCTAGATGGCCTCTGGTCTCCACTGAGAGC  1776

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1777  TGAATCGCCCTGCCTGTGCAGACAAGCTAGCCATTAGAGAGGGTTGGTTGGGTGTGCTACTTTCAGTATTTCAG  1850

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1851  GGTGTCTTCCAACTGAAATCTCAATCTTCGCAGTATATATATTAAAACCAACGAGCAAACCTGAGCTCCGATGC  1924

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1925  CTAGGATGTACTGTTTACCCAGAAACCCCCCAAAAAAGCAGATGGATACTGGCCATATTTTGCTTTTTTGACAC  1998

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1999  TTCCTTGGGAATCTACAAGAACCTCCCTTCCCCCTCCCCGAGTAAGACCTAAGACCATTTAAGTGTGTGTTAAA  2072

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 2073  CAACTACAAAATACTCAATAAAACGTTTGGCCAAAGTCAACCCTGAAGCTGCAAACCGATGCTTGCTCTTACTG  2146

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 2147  TTTCAAATTTTTGCAACTCTGTAGTGTCTCACTTTTAAAGGAACAGCTTGATTGCAAAGGAGAAAATAGATAAG  2220

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 2221  CAATGAAGTTATCTCCAACTTCCTAAAGGCTTATGACTTCTAAAAAGTGAATCTATCAGCATTCCACATCAGAT  2294

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 2295  TTAAAGCACCAAATGCCCGTGAAACAGCAAAGATGGTTGAATCTAATGGTCATACTGTCCTGGAGTGCTGATTG  2368

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 2369  ATTGATTCACAGTAGATAAAGCTGGCAGTAAGGAACAATCAGATGCTCAGAGTTGCTGAAGCAGAGGAACGCTG  2442

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 2443  AGACTAAGCCACAGCAGTTGCTTACCCAGTGCGCATCAGAATTGGTTTGGTACAGGCAATAGTTTGTTTTTTTT  2516

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 2517  TTTTTTTTGTCTTCAAGGGAGGGAGGATGATTAAACCGAATCAGTGCTTGTTAATCCTTAATTAGGGAGTGGCA  2590

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 2591  ATCACTTAAAACTGACCCAATGGAGAGAGGGAGACTAATTGGTAAGTGGAGGTACCTACCCAAGAAGTTCGGGT  2664

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 2665  GACTCTTTGTAGACATTCAGTCGTTCGGGCAAAGTCATAGGGCAACTCTGCAATTTCGAGCTGATGATCACTGA  2738

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 2739  GAGAAGAACATTGAATGAGCTGGGGCTGTAACTCCATGGTGAGTGCTTGCCTAAGCACCAGTGAGGCTAGCATT  2812

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 2813  CAACCCCTGGCAGGACACACAAACATTTCAGTCAGAAAAATTATACCTCACTCATGTCTGACCCATTTGATGAA  2886

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 2887  TTTTGCCTCATCAGTAGGAAACATTATTAGTTGTCTTGTAAAACTAAGAAGGGGAAGAACAGTGCTGGGAAATG  2960

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 2961  AAAGTCAAAACTGGCAACGTTAGGCTAGTTAGGAAAACATATTGGGAACAAAAATAGGTCACTAGGTCACTGTG  3034

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 3035  GTTTTATAAAAGGTACTTTACCCTCAGGGCTCCATCTTGGAAACAAACCATGAAGCTATAACTCTAGTTTACTG  3108

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 3109  CTTTGGAAACTCAGCCAGTAATGTGAACGCAGATAATCTCAACAGAAGCGGGTTGAGTTTTAGAGTCAAAGAAT  3182

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 3183  TTAACTCCACTTGTGAGATTTTTCTTACGAATTTGTTACAGTGCTGTTGAGGGGATTTCAAGCCTTTCGTCCTC  3256

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 3257  TAATCAGGCCCGGAGTAGGTTCTGCTGTCAAGACCTTTAGCTCGTGACATTTTATATGCATTTTTTAGTTTGTC  3330

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 3331  ATGGGCAATATTACACTAAATATGAATGTTAAATTCAAAGTGGGAAGTTGGTAGAAAATTTCAAGAGACTTTTT  3404

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 3405  TGACAAGTGGTAGAATATAGAACTAGCAGGTCTAAAATCTGCAATTAGAAAAAAAAAATTAGCCTTGATTCTTC  3478

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 3479  TGGCTAAACTCTGGTTGTAGAAGAATTTGAATAATACACAAAGTGCTGTGGTTTATTTGGTAGCTGGATGTAGA  3552

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 3553  ACATTATAGATCATTTATTTATTTATTTATTTATTTTGGAATGTTTTGTATTGAAGCCCAATAAAACTTGAATG  3626

Query 1174  ------  1173
                  
Sbjct 3627  TGTGTC  3632

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