Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_03473
Subject:
XR_001737252.1
Aligned Length:
3502
Identities:
1610
Gaps:
1892

Alignment

Query    1  --------------ATGGCGGACCGTGGCGGCGTGGGTGAAGCCGCAGCTGTTGGAGCGTCTCCTGCATCTGTC  60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  GCGATAGCGGCAAGATGGCGGACCGTGGCGGCGTGGGTGAAGCCGCAGCTGTTGGAGCGTCTCCTGCATCTGTC  74

Query   61  CCTGGCCTAAACCCGACGCTAGGCTGGAGGGAGCGACTGCGGGCCGGGCTGGCGGGGACTGGGGCCTCGTTGTG  134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CCTGGCCTAAACCCGACGCTAGGCTGGAGGGAGCGACTGCGGGCCGGGCTGGCGGGGACTGGGGCCTCGTTGTG  148

Query  135  GTTCGTGGCGGGGCTGGGGCTGCTTTACGCCCTGAGGATCCCTTTGAGGCTGTGTGAGAATTTGGCAGCGGTGA  208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GTTCGTGGCGGGGCTGGGGCTGCTTTACGCCCTGAGGATCCCTTTGAGGCTGTGTGAGAATTTGGCAGCGGTGA  222

Query  209  CTGTATTTTTAAATTCATTGACACCCAAATTCTATGTGGCACTTACAGGGACCTCTTCATTGATATCAGGACTA  282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CTGTATTTTTAAATTCATTGACACCCAAATTCTATGTGGCACTTACAGGGACCTCTTCATTGATATCAGGACTA  296

Query  283  ATATTTATATTTGAATGGTGGTACTTCCATAAGCATGGCACATCTTTTATTGAGCAAGTATCTGTAAGCCATTT  356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ATATTTATATTTGAATGGTGGTACTTCCATAAGCATGGCACATCTTTTATTGAGCAAGTATCTGTAAGCCATTT  370

Query  357  GCAACCACTGATGGGAGGAACAGAGAGCAGCATTTCAGAACCAGGTTCTCCTTCGAGGAACAGAGAAAATGAAA  430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GCAACCACTGATGGGAGGAACAGAGAGCAGCATTTCAGAACCAGGTTCTCCTTCGAGGAACAGAGAAAATGAAA  444

Query  431  CCAGCAGACAGAATTTGTCAGAATGTAAGGTATGGAGAAACCCTCTAAATCTTTTCAGAGGAGCAGAATATAGG  504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CCAGCAGACAGAATTTGTCAGAATGTAAGGTATGGAGAAACCCTCTAAATCTTTTCAGAGGAGCAGAATATAGG  518

Query  505  AGATACACTTGGGTGACTGGTAAAGAGCCACTTACATACTATGACATGAACCTGTCAGCTCAGGACCATCAGAC  578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AGATACACTTGGGTGACTGGTAAAGAGCCACTTACATACTATGACATGAACCTGTCAGCTCAGGACCATCAGAC  592

Query  579  CTTTTTCACCTGTGACACAGATTTTTTACGTCCTTCAGACACAGTTATGCAGAAGGCTTGGAGGGAAAGAAATC  652
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTTTTTCACCTGTGACACAGATTTTTTACGTCCTTCAGACACAGTTATGCAGAAGGCTTGGAGGGAAAGAAATC  666

Query  653  CTCCAGCTCGAATCAAAGCAGCCTATCAAGCTTTAGAATTAAACAATGACTGTGCCACTGCATATGTTCTACTG  726
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CTCCAGCTCGAATCAAAGCAGCCTATCAAGCTTTAGAATTAAACAATGACTGTGCCACTGCATATGTTCTACTG  740

Query  727  GCTGAGGAAGAAGCAACAACTATTGTAGATGCTGAAAGGTTATTTAAACAGGCACTCAAGGCAGGAGAAACAAT  800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GCTGAGGAAGAAGCAACAACTATTGTAGATGCTGAAAGGTTATTTAAACAGGCACTCAAGGCAGGAGAAACAAT  814

Query  801  TTATAGGCAGTCACAGCAGTGCCAGCACCAAAGTCCTCAGCATGAAGCTCAACTGAGGAGAGATACCAATGTAC  874
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TTATAGGCAGTCACAGCAGTGCCAGCACCAAAGTCCTCAGCATGAAGCTCAACTGAGGAGAGATACCAATGTAC  888

Query  875  TGGTATATATTAAAAGAAGATTGGCAATGTGTGCAAGAAAATTAGGAAGAATAAGAGAAGCAGTAAAAATAATG  948
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TGGTATATATTAAAAGAAGATTGGCAATGTGTGCAAGAAAATTAGGAAGAATAAGAGAAGCAGTAAAAATAATG  962

Query  949  AGAGATTTGATGAAAGAATTTCCTCCTCTTACCATGTTGAACATCCATGAAAATCTCTTAGAATCACTTTTAGA  1022
            ||||||                                                                    
Sbjct  963  AGAGAT--------------------------------------------------------------------  968

Query 1023  ATTACAGGCCTATCCAGATGTTCAGGCAGTCCTAGCAAAATATGATGATATAAGCCTTCCAAAGTCAGCAGCAA  1096
                                                           |||||||||||||||||||||||||||
Sbjct  969  -----------------------------------------------ATATAAGCCTTCCAAAGTCAGCAGCAA  995

Query 1097  TCTGTTACACAGCAGCACTGTTGAAGACAAGGACTGTTTCAGAAAAATTCTCTCCAGAAACAGCCTCCAGAAGA  1170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  996  TCTGTTACACAGCAGCACTGTTGAAGACAAGGACTGTTTCAGAAAAATTCTCTCCAGAAACAGCCTCCAGAAGA  1069

Query 1171  GGATTAAGCACAGCAGAAATTAATGCCGTGGAAGCAATTCATAGAGCTGTGGAATTTAATCCTCATGTTCCAAA  1244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070  GGATTAAGCACAGCAGAAATTAATGCCGTGGAAGCAATTCATAGAGCTGTGGAATTTAATCCTCATGTTCCAAA  1143

Query 1245  ATATTTATTAGAGATGAAAAGTTTAATTTTACCTCCAGAACACATTCTGAAACGGGGTGATAGTGAAGCAATTG  1318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144  ATATTTATTAGAGATGAAAAGTTTAATTTTACCTCCAGAACACATTCTGAAACGGGGTGATAGTGAAGCAATTG  1217

Query 1319  CCTATGCTTTCTTTCATCTTCAGCACTGGAAACGAATAGAAGGTGCTCTTAATCTGTTACAGTGTACATGGGAA  1392
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218  CCTATGCTTTCTTTCATCTTCAGCACTGGAAACGAATAGAAGGTGCTCTTAATCTGTTACAGTGTACATGGGAA  1291

Query 1393  GGCACTTTTAGAATGATTCCATACCCGTTAGAGAAAGGACATCTATTTTACCCTTATCCCAGCTGCACAGAGAC  1466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292  GGCACTTTTAGAATGATTCCATACCCGTTAGAGAAAGGACATCTATTTTACCCTTATCCCAGCTGCACAGAGAC  1365

Query 1467  GGCTGATAGAGAGCTATTACCTACCTTTCATCATGTTTCTGTTTACCCAAAAAAGGAGCTTCCTTTGTTCATCC  1540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366  GGCTGATAGAGAGCTATTACCTACCTTTCATCATGTTTCTGTTTACCCAAAAAAGGAGCTTCCTTTGTTCATCC  1439

Query 1541  ATTTCACAGCAGGATTTTGCTCTTCTACAGCAATGATAGCCATTCTCACTCACCAGTTTCCTGAAATCATGGGT  1614
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440  ATTTCACAGCAGGATTTTGCTCTTCTACAGCAATGATAGCCATTCTCACTCACCAGTTTCCTGAAATCATGGGT  1513

Query 1615  ATTTTTGCTAAAGCTGTGCTGGGACTCTGGTGCCCCCAACCCTGGGCATCCTCAGGCTTTGAGGAGAATACACA  1688
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514  ATTTTTGCTAAAGCTGTGCTGGGACTCTGGTGCCCCCAACCCTGGGCATCCTCAGGCTTTGAGGAGAATACACA  1587

Query 1689  GGATTTGAAGTCAGAAGACCTAGGTTTGAGTTCTGGC-------------------------------------  1725
            |||||||||||||||||||||||||||||||||||||                                     
Sbjct 1588  GGATTTGAAGTCAGAAGACCTAGGTTTGAGTTCTGGCTGAGCCACGCACTGTTCATGTGACCTTGGACAAATCA  1661

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 1662  CCAAATTTTTCTGAACAGCATCTGTAAAGTGACAGTAACCCCTACCTCACAGGGTTGTTGTGAGGATTACATAT  1735

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 1736  ATGCTAAAGCATTTTGCATATGAAAAAGCTTCTTATGAATATTGTTATTCCTAGGCAAACCCCCCTTGGAAGCT  1809

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 1810  GTCAAAAAGGACAACTGTAGATGAAATTGTCTTCCTTTTTTCTTCATTCAGCTTAGCCTTTCTGTTTGGCCAGG  1883

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 1884  GCTACTTACAGGGGCTGTTGGGGTTGAAGTCAAGTCACCGCATTTTGGCTCCTTTGGTCAAAGAGAAAGAACTC  1957

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 1958  TAATGTCCAGCTGCTCCATCGATATACTCATAGAATGGAAGTGAGCAAAGGAAAATTTTAAGCCAGGATAGTTA  2031

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 2032  ACCGTTAGGGGGCCAGTGGGAGAATGCTTGCCTTGCATTTGCACATCCAGAATGACTAAAACATCTTAAGTAAA  2105

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 2106  TGAGGAATAGCCACCGAGATGCTCAGAGATAATATAAGCCATGAGTGGGAAGTGGGAAAATGAGTTTGTCAACG  2179

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 2180  CCCTCTCTTTTCTATCCCTTTACCTTTGAGGTCAGGGACAGGGCATATTACTGACACCCCACTGGCTATTGCCC  2253

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 2254  TATACCTGCCAATCACCCAAAGAAAATAATAGCTTCTGAGAAAGCTCAATTCACTGTAGCAACTGTGATATATT  2327

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 2328  TACCCTAATAAAGCCACCACTTGGTCTTTTCCAGTGCTTCTCTCTTATGGAGATCATCCCTGGAATCCAAAGCT  2401

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 2402  CTCCAGTTTTCTAACCCAGTTAAGAGTTAAAAACAACCACAGGTCATGAGCAGTAGGCTTGGCAGTTATACCCC  2475

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 2476  ATGCAGTCATAGGAGACTGCTCCATCATTCTCAGCACATAGGGTGCACATCTCACTATCTCTGGCATGAACCAG  2549

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 2550  CCTTGCGAACTTATACAGTCTCAGCCACTCTGCTTTGATGGTAATTCTTCACCACTGATCTCTCCTCACCATGC  2623

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 2624  CCTTCCTGCATCCTTCCCCCAACCACCCACCAGAGGAGTTCTGGTCCCCAAACCAAAGAGTTGCCTGCAGGTTG  2697

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 2698  GTAATGTGACTTTGTAGATATTCCTTGATTAAAGCCAGACCCTATTGGTATCCTTTTTGAAGTACTGGATCGAA  2771

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 2772  ATCTAATTGCTTTTTTTTTTAATTGTTGGGGAGAGGAGGATGAGCAGAACTCCTATGCAGCCTGAGAGAAGTTC  2845

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 2846  TCTATGTGTCTGTATATGTACACCTCTGTGTGTGTGTGTGTAACCTCATGGTTGTGCTCAGGCTGACAGGGAGG  2919

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 2920  GCAAAGAGTGAAAAGGAAGCATCTCTTTCTTGTTATCCAACATTGCTTCAAAGATGCCCAACCCCCGTAGTAGC  2993

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 2994  AGGCAGTTCCCAAGTGGAGGGTCGGGGCAGAGGCCTCCACCAAGGCCATCAATAACCAGGTGTGAGCTACAGGT  3067

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 3068  CTCTGTGTAATGTGAAGCTCTCCCGTATTTCATTTCTGCACCCAGGGGGCGGCTCTGCAGGATTGCTTACGGAG  3141

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 3142  AACTCTGTGTCTGGCACCTCTCTCCACAAGGCCCAGGCGCCCAGGGTCCCACCGACCTGCCCAGGAATGCATCA  3215

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 3216  CATTGTTCTCTGGTGCTGTAATTTGGCTGCAGGAGCTAGGCTGAATGCCTCCCAGGGATGAGAAACATACTCTC  3289

Query 1726  --------------------------------------------------------------------------  1725
                                                                                      
Sbjct 3290  CCTGGCGTCCTCCCTTCGCCCCAGCTAGCTTGAGCTTCTGCCCTATGACCACTGAGTGCATTTAAATAAAAACC  3363

Query 1726  ------------------------  1725
                                    
Sbjct 3364  TCAGAAAGACTGAGGAAAAAAAAA  3387

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