Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_03530
Subject:
NM_001166135.2
Aligned Length:
2277
Identities:
1854
Gaps:
423

Alignment

Query    1  ATGGCCGGCCTGACCTTATTTGTGGGCCGCCTCCCGCCCTCGGCCCGCAGTGAGCAGCTGGAGGAACTGTTCAG  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCCGGCCTGACCTTATTTGTGGGCCGCCTCCCGCCCTCGGCCCGCAGTGAGCAGCTGGAGGAACTGTTCAG  74

Query   75  TCAGGTGGGGCCGGTGAAGCAGTGCTTCGTGGTGACTGAAAAAGGGAGTAAGGCATGTCGAGGCTTTGGCTATG  148
            |||||||||||||||||||||||||||||||||||||||                                   
Sbjct   75  TCAGGTGGGGCCGGTGAAGCAGTGCTTCGTGGTGACTGA-----------------------------------  113

Query  149  TCACTTTTTCAATGCTGGAAGATGTTCAGAGGGCCCTCAAGGAGATTACCACCTTTGAAGGTTGCAAGATCAAC  222
                                                                                      
Sbjct  114  --------------------------------------------------------------------------  113

Query  223  GTGACTGTTGCCAAGAAAAAACTGAGGAACAAGACAAAGGAAAAGGGGAAAAATGAAAACTCAGAGTGCCCAAA  296
                                                                                      
Sbjct  114  --------------------------------------------------------------------------  113

Query  297  GAAGGAGCCGAAGGCTAAAAAAGCCAAAGTGGCAGATAAGAAAGCCAGATTAATTATTCGGAACCTGAGCTTTA  370
                                                                                      
Sbjct  114  --------------------------------------------------------------------------  113

Query  371  AGTGTTCAGAAGATGACTTGAAGACAGTATTTGCTCAATTTGGAGCTGTCCTGGAAGTAAATATCCCTAGGAAA  444
                                                                                      
Sbjct  114  --------------------------------------------------------------------------  113

Query  445  CCAGATGGGAAGATGCGCGGTTTTGGTTTTGTTCAGTTCAAAAACCTCCTAGAAGCAGGTAAAGCTCTCAAAGG  518
                                                                                      
Sbjct  114  --------------------------------------------------------------------------  113

Query  519  CATGAACATGAAAGAGATAAAAGGCCGGACAGTGGCTGTGGATTGGGCCGTGGCAAAGGATAAATATAAAGATA  592
                              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  114  ------------------AAAAGGCCGGACAGTGGCTGTGGATTGGGCCGTGGCAAAGGATAAATATAAAGATA  169

Query  593  CACAGTCTGTTTCTGCTATAGGTGAGGAAAAGAGCCATGAATCTAAACATCAGGAATCAGTTAAAAAGAAGGGC  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  170  CACAGTCTGTTTCTGCTATAGGTGAGGAAAAGAGCCATGAATCTAAACATCAGGAATCAGTTAAAAAGAAGGGC  243

Query  667  AGAGAGGAAGAGGATATGGAAGAGGAAGAAAACGATGATGATGACGATGATGATGATGAAGAAGATGGGGTTTT  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  244  AGAGAGGAAGAGGATATGGAAGAGGAAGAAAACGATGATGATGACGATGATGATGATGAAGAAGATGGGGTTTT  317

Query  741  TGATGATGAAGATGAAGAGGAAGAGAATATAGAATCAAAGGTGACCAAGCCTGTGCAAATTCAGAAGAGAGCAG  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  318  TGATGATGAAGATGAAGAGGAAGAGAATATAGAATCAAAGGTGACCAAGCCTGTGCAAATTCAGAAGAGAGCAG  391

Query  815  TCAAGAGACCAGCCCCTGCAAAAAGCAGTGATCATTCTGAGGAGGACAGTGACCTAGAGGAAAGCGATAGTATT  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  392  TCAAGAGACCAGCCCCTGCAAAAAGCAGTGATCATTCTGAGGAGGACAGTGACCTAGAGGAAAGCGATAGTATT  465

Query  889  GATGATGGAGAGGAACTGGCTCAGAGTGATACCAGCACTGAGGAGCAAGAGGATAAAGCTGTGCAAGTCTCAAA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  466  GATGATGGAGAGGAACTGGCTCAGAGTGATACCAGCACTGAGGAGCAAGAGGATAAAGCTGTGCAAGTCTCAAA  539

Query  963  CAAAAAGAAGAGGAAATTACCCTCTGATGTGAATGAAGGGAAAACTGTTTTTATCAGAAATCTGTCCTTTGACT  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  540  CAAAAAGAAGAGGAAATTACCCTCTGATGTGAATGAAGGGAAAACTGTTTTTATCAGAAATCTGTCCTTTGACT  613

Query 1037  CAGAAGAAGAAGAACTTGGGGAGCTTCTCCAACAGTTTGGAGAACTCAAATATGTCCGCATTGTCTTGCATCCA  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  614  CAGAAGAAGAAGAACTTGGGGAGCTTCTCCAACAGTTTGGAGAACTCAAATATGTCCGCATTGTCTTGCATCCA  687

Query 1111  GACACAGAGCATTCTAAAGGTTGTGCATTTGCCCAGTTCATGACTCAAGAAGCAGCTCAGAAATGCCTTCTAGC  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  688  GACACAGAGCATTCTAAAGGTTGTGCATTTGCCCAGTTCATGACTCAAGAAGCAGCTCAGAAATGCCTTCTAGC  761

Query 1185  TGCTTCTCCAGAGAATGAGGCTGGTGGGCTTAAACTGGATGGCCGGCAGCTCAAGGTTGACTTGGCGGTGACCC  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  762  TGCTTCTCCAGAGAATGAGGCTGGTGGGCTTAAACTGGATGGCCGGCAGCTCAAGGTTGACTTGGCGGTGACCC  835

Query 1259  GTGATGAGGCTGCAAAGCTTCAGACGACGAAGGTGAAGAAGCCGACTGGCACCCGGAATCTCTATCTGGCCCGA  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  836  GTGATGAGGCTGCAAAGCTTCAGACGACGAAGGTGAAGAAGCCGACTGGCACCCGGAATCTCTATCTGGCCCGA  909

Query 1333  GAAGGCTTGATTCGTGCTGGGACGAAGGCTGCAGAGGGTGTGAGTGCTGCTGATATGGCCAAAAGAGAACGGTT  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  910  GAAGGCTTGATTCGTGCTGGGACGAAGGCTGCAGAGGGTGTGAGTGCTGCTGATATGGCCAAAAGAGAACGGTT  983

Query 1407  TGAGCTGCTGAAGCATCAGAAACTCAAGGACCAGAATATCTTTGTCTCCCGAACCAGGCTCTGCCTGCACAATC  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  984  TGAGCTGCTGAAGCATCAGAAACTCAAGGACCAGAATATCTTTGTCTCCCGAACCAGGCTCTGCCTGCACAATC  1057

Query 1481  TCCCAAAGGCTGTAGATGACAAACAGCTCAGAAAGCTGCTGCTGAGTGCTACTAGTGGAGAGAAAGGGGTGCGC  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058  TCCCAAAGGCTGTAGATGACAAACAGCTCAGAAAGCTGCTGCTGAGTGCTACTAGTGGAGAGAAAGGGGTGCGC  1131

Query 1555  ATCAAGGAGTGTAGAGTGATGCGAGACCTCAAAGGAGTTCATGGGAACATGAAGGGTCAGTCCCTGGGCTACGC  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132  ATCAAGGAGTGTAGAGTGATGCGAGACCTCAAAGGAGTTCATGGGAACATGAAGGGTCAGTCCCTGGGCTACGC  1205

Query 1629  CTTTGCGGAGTTCCAAGAGCACGAGCATGCCCTGAAAGCCCTCCGCCTCATCAACAACAATCCAGAAATCTTTG  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206  CTTTGCGGAGTTCCAAGAGCACGAGCATGCCCTGAAAGCCCTCCGCCTCATCAACAACAATCCAGAAATCTTTG  1279

Query 1703  GGCCTCTGAAGAGACCAATAGTGGAGTTCTCTTTAGAAGATCGAAGAAAACTTAAAATGAAGGAATTAAGGATC  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280  GGCCTCTGAAGAGACCAATAGTGGAGTTCTCTTTAGAAGATCGAAGAAAACTTAAAATGAAGGAATTAAGGATC  1353

Query 1777  CAGCGCAGCTTGCAAAAAATGAGATCCAAGCCTGCAACTGGTGAGCCTCAGAAGGGGCAACCAGAGCCTGCAAA  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354  CAGCGCAGCTTGCAAAAAATGAGATCCAAGCCTGCAACTGGTGAGCCTCAGAAGGGGCAACCAGAGCCTGCAAA  1427

Query 1851  AGACCAGCAACAGAAGGCAGCTCAACACCACACAGAGGAACAAAGCAAGGTGCCCCCAGAGCAGAAGAGAAAGG  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428  AGACCAGCAACAGAAGGCAGCTCAACACCACACAGAGGAACAAAGCAAGGTGCCCCCAGAGCAGAAGAGAAAGG  1501

Query 1925  CGGGCTCTACCTCATGGACCGGGTTCCAGACCAAGGCTGAAGTGGAGCAGGTGGAGCTGCCTGATGGAAAGAAG  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502  CGGGCTCTACCTCATGGACCGGGTTCCAGACCAAGGCTGAAGTGGAGCAGGTGGAGCTGCCTGATGGAAAGAAG  1575

Query 1999  AGAAGAAAGGTCCTGGCGCTCCCCTCACACCGAGGCCCCAAAATCAGGTTGCGGGACAAAGGCAAAGTGAAGCC  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576  AGAAGAAAGGTCCTGGCGCTCCCCTCACACCGAGGCCCCAAAATCAGGTTGCGGGACAAAGGCAAAGTGAAGCC  1649

Query 2073  CGTCCATCCCAAAAAGCCAAAGCCACAGATAAACCAGTGGAAGCAGGAGAAGCAGCAATTATCGTCCGAGCAGG  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650  CGTCCATCCCAAAAAGCCAAAGCCACAGATAAACCAGTGGAAGCAGGAGAAGCAGCAATTATCGTCCGAGCAGG  1723

Query 2147  TATCTAGGAAAAAAGCTAAGGGAAATAAGACGGAAACCCGCTTCAACCAGCTGGTCGAACAATATAAGCAGAAA  2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1724  TATCTAGGAAAAAAGCTAAGGGAAATAAGACGGAAACCCGCTTCAACCAGCTGGTCGAACAATATAAGCAGAAA  1797

Query 2221  TTATTGGGACCTTCTAAAGGAGCACCTCTTGCAAAGAGGAGCAAATGGTTTGATAGT  2277
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798  TTATTGGGACCTTCTAAAGGAGCACCTCTTGCAAAGAGGAGCAAATGGTTTGATAGT  1854

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.