Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_03707
Subject:
NM_018909.4
Aligned Length:
2900
Identities:
1750
Gaps:
895

Alignment

Query    1  ATGGTTT-----CCAGATG-TAGCTGCCTGGGGGTCCAGTGTCTGCTGCTCTCGCTTCTTCTCCTCGCAGCCTG  68
            |||||.|     ||.||.| |||.|   ||||....||.||||||||.|||.|||||||.||||||||||||||
Sbjct    1  ATGGTGTTTACCCCGGAGGATAGAT---TGGGAAAGCAATGTCTGCTCCTCCCGCTTCTGCTCCTCGCAGCCTG  71

Query   69  GGAGGTGGGGAGCGGCCAGCTCCACTACTCAGTCTACGAGGAGGCCAGACACGGCACCTTCGTGGGCCGCATCG  142
            |.||||||||||||||||||||||||||||.||...|||||||||||.|||||||||||||||||||||.||||
Sbjct   72  GAAGGTGGGGAGCGGCCAGCTCCACTACTCCGTACCCGAGGAGGCCAAACACGGCACCTTCGTGGGCCGGATCG  145

Query  143  CGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAAGA-CACGGGGA  215
            ||||||||||||||||||||||||||||||||||||.||||||||||.||.||||.||| ||||| |.||.|||
Sbjct  146  CGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCAGGATGGCCTCC-AAAGACCGCGAGGA  218

Query  216  CCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATTGACCGCGAGGAGCTGTGCGGGC  289
            |||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct  219  CCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCGGGC  292

Query  290  GGAGCGTGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAA  363
            ||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct  293  GGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAG  366

Query  364  GTGAAGGACATTAACGACAACCCGCCCAGGTTCTCCGTAACAGAACAAA-AGCTCTCA-ATACCTGAATCCAGA  435
            ||||.||||||||||||||||||||||..||||.|.|||...||||||| ||..||.| .|||  |||||.||.
Sbjct  367  GTGAGGGACATTAACGACAACCCGCCCTTGTTCCCGGTAGAGGAACAAAGAGTGCTGATTTAC--GAATCTAGG  438

Query  436  CTGCTTGACTCTCGATTTCCACTAGAAGGCGCATCTGATGCGGATGTTGGAGAGAACGC--ATTGC----TTAC  503
            ||||..||.|||...||||||||.||.|||||.||.|||||.||||||||      |.|  |||.|    |.||
Sbjct  439  CTGCCAGATTCTGTGTTTCCACTGGAGGGCGCGTCCGATGCAGATGTTGG------CTCAAATTCCATCTTAAC  506

Query  504  TTACAAACTCAGTCCAAATGAGTATTTTGTTCTTGAT---ATTATAAACAAAAAAGACAA-AGACAAATTCCCA  573
            .||.|||||||||.|.|..||.||.||.|..||.|||   |..|||||||...|.||||| |.|||||||    
Sbjct  507  CTATAAACTCAGTTCTAGCGAATACTTCGGGCTAGATGTGAAAATAAACAGTGATGACAATAAACAAATT----  576

Query  574  GTG--CTTGTTCTGCGGAAG-----CTGCTGGATCGTGAAGAAAATCCT-CAGCTAAAGTTGTTGTTGACAGCA  639
            |.|  |||.||     .|||     ||  ||||..|.||.|||..|||| || |..||.||.||..|||||||.
Sbjct  577  GGGCTCTTATT-----AAAGAAATCCT--TGGACAGAGAGGAAGCTCCTGCA-CACAACTTATTCCTGACAGCC  642

Query  640  ACTGATGGAGGCAAACCTGAATTTACCGGATCTGTTTCTCTGCTGATCCTGGTGTTAGATGCCAATGATAACGC  713
            ||.|||||.|||||||||||..|.||.||..|||||...||||||.||...|||.|.||||..||||||||.||
Sbjct  643  ACAGATGGGGGCAAACCTGAGCTCACAGGCACTGTTCAGCTGCTGGTCACAGTGCTGGATGTGAATGATAATGC  716

Query  714  CCCTATCTTT--GACAGACCGGTTTATGAAGTTAAGATGTAT--GAAAATCAAGTGAACCAAACATTAGTAATA  783
            .||.| ||||  .|||| .|.|..||.|||| ||||| .|||  ||||||..||..|||..||||..|||.||.
Sbjct  717  TCCCA-CTTTCGAACAG-TCTGAATACGAAG-TAAGA-ATATTCGAAAATGCAGACAACGGAACAACAGTTATC  786

Query  784  CGGCTCAACGCTTCTGATTCGGATGAAGGAATAAACAAGGAAATGATGTATTCATT---TAGCTCTTTGGTCCC  854
            .|.||.||.|||||||||..||||||||||...||...||.|||....|||||.||   |||| |||  ||..|
Sbjct  787  AGACTGAATGCTTCTGATCGGGATGAAGGAGCGAATGGGGCAATTTCATATTCTTTTAATAGC-CTT--GTTGC  857

Query  855  ACCCACGATAA--GAAGGAAATTTTGGATA-AACGAAAGGACGGGAGAAATAAAAGTAAATGATGC-------T  918
            |.|||.|.|.|  ||  ..|.|||.|.||| |.||||| .|||||||||||       |.||||.|       |
Sbjct  858  AGCCATGGTTATTGA--CCACTTTAGCATAGATCGAAA-TACGGGAGAAAT-------AGTGATTCGGGGTAAT  921

Query  919  ATTGACTTTGAGGACAGTAACACTTAT--GAAAT--TCATGTAGATGTTACAGATAAGGGAAACCCACCTATGG  988
            .|.||.|||||  |||..||.||||||  .||||  |||  |.||.|..||.||.||.||..|.||.||.||||
Sbjct  922  TTGGATTTTGA--ACAAGAAAACTTATACAAAATCCTCA--TTGACGCCACGGACAAAGGCCATCCTCCCATGG  991

Query  989  TTGGTCACTGCACGGTCCTAGTG-GAACTACTGGATGAAAATGATAA-TTCACCTGAGGTGATTG---TCACTT  1057
            ..|||||.|||||.||..||||| ||| |..|||||.|||||||||| .|| |||||   |||.|   |.||||
Sbjct  992  CGGGTCATTGCACCGTTTTAGTGAGAA-TTTTGGATAAAAATGATAACGTC-CCTGA---GATAGCACTGACTT  1060

Query 1058  CTCTGTCTCTCCCAGTGAAAGAAGATGCTCAAGTGGGCACCGTCATTGCCCTAATCAGCGTTTCTGACCATGAT  1131
            |..|.||..|.||.||....|||||.||||||.|.||.||.|||||.||||||||.|||||....||||..|||
Sbjct 1061  CCTTATCCTTGCCTGTACGTGAAGACGCTCAATTTGGTACTGTCATCGCCCTAATTAGCGTGAACGACCTCGAT  1134

Query 1132  TCAGGAGCCAACGGACAGGTCACCTGCTCTCTGACGCCTCACGTTCCGTTCAAGCTGGTGTCCACCTACAAGAA  1205
            |||||.||||||||.|||||.|.||||||.||||||||||||||.||.|||||||||||||||||||.||||||
Sbjct 1135  TCAGGTGCCAACGGGCAGGTGAACTGCTCGCTGACGCCTCACGTCCCTTTCAAGCTGGTGTCCACCTTCAAGAA  1208

Query 1206  TTACTACTCATTGGTGCTGGACAGCGCTCTGGACCGCGAGAGGGTGTCGGCCTATGAGCTGGTGGTGACCGCGC  1279
            |||||||||.||||||||||||||.||.||||||||||||||.|||||||||||||||.|||||||.|||||||
Sbjct 1209  TTACTACTCGTTGGTGCTGGACAGTGCCCTGGACCGCGAGAGCGTGTCGGCCTATGAGTTGGTGGTAACCGCGC  1282

Query 1280  GGGACGGGGGCTCGCCTCCGCTGTGGGCCACGGCCAGCGTGTCTGTGGAGGTGGCCGACGTGAACGACAACGCG  1353
            |||||||||||||||||.|||||||||||||.||||||.||||||||||||||||||||.||||.|||||.||.
Sbjct 1283  GGGACGGGGGCTCGCCTTCGCTGTGGGCCACCGCCAGCTTGTCTGTGGAGGTGGCCGACATGAATGACAATGCT  1356

Query 1354  CCTGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCAGGCTGCCACATCTTCACGGT  1427
            ||.||||||||||||.||||||||||.||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 1357  CCGGCGTTCGCGCAGCCCGAGTACACAGTGTTCGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCACGGT  1430

Query 1428  GTCTGCGTGGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCTCTGGTGGAGCGGCGGTTGGGCGAGC  1501
            |||||||.|.|||||||||||||||||||||||.||||||||||||||.|||||||||||||||.|||||||||
Sbjct 1431  GTCTGCGCGAGACGCGGACGCGCAGGAGAACGCGCTGGTGTCCTACTCGCTGGTGGAGCGGCGGGTGGGCGAGC  1504

Query 1502  GCTCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAG  1575
            ||.||.|||||||||||.|.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505  GCGCGTTGTCGAGCTACATTTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAG  1578

Query 1576  GAGCTGGAGCTGCTACAGTTCCAG--------------------------------------------------  1599
            |||||.||||||||.|||||.|||                                                  
Sbjct 1579  GAGCTAGAGCTGCTGCAGTTTCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCTCTGGGCAGCAACGTGACGCT  1652

Query 1600  --------------------------------------------------------------------------  1599
                                                                                      
Sbjct 1653  GCAGGTGTTCGTGCTGGACGAGAACGACAACGCGCCGGCGCTGCTGGCGCCTCGGGTGGGTGGTACTGGTGGTG  1726

Query 1600  --------------------------------------------------------------------------  1599
                                                                                      
Sbjct 1727  CAGTGAGCGAGCTGGTGCCGCGGTCACTGGGTGCAGGCCAAGTGGTGGCGAAGGTGCGCGCAGTTGACGCCGAC  1800

Query 1600  --------------------------------------------------------------------------  1599
                                                                                      
Sbjct 1801  TCAGGCTACAACGCGTGGCTTTCGTATGAGCTGCAGCCCCCGGCAAGCAGCGCTCGCTTCCCGTTTCGCGTGGG  1874

Query 1600  --------------------------------------------------------------------------  1599
                                                                                      
Sbjct 1875  GCTGTACACGGGCGAGATCAGCACCACTCGTGTCCTGGACGAAGCGGACTCTCCGCGCCACCGGCTGCTGGTGC  1948

Query 1600  --------------------------------------------------------------------------  1599
                                                                                      
Sbjct 1949  TGGTGAAAGACCACGGTGAGCCGGCGCTGACAGCGACGGCCACGGTTCTGGTGTCGCTGGTGGAGAGTGGCCAG  2022

Query 1600  --------------------------------------------------------------------------  1599
                                                                                      
Sbjct 2023  GCTCCAAAGGCGTCATCACGGGCGTCGGTGGGCGCCGCGGGCCCAGAGGCGGCGCTGGTGGATGTCAACGTGTA  2096

Query 1600  --------------------------------------------------------------------------  1599
                                                                                      
Sbjct 2097  CCTGATCATCGCCATCTGCGCGGTATCCAGCCTGCTGGTCCTCACGCTACTGCTGTACACAGCGCTGCGGTGCT  2170

Query 1600  --------------------------------------------------------------------------  1599
                                                                                      
Sbjct 2171  CGGCGCCACCCACCGAGGGCGCGTGCACGGCGGACAAGCCCACGCTGGTGTGCTCCAGCGCAGTGGGGAGCTGG  2244

Query 1600  --------------------------------------------------------------------------  1599
                                                                                      
Sbjct 2245  TCGTACTCGCAGCAGAGGCGGCAGAGGGTGTGCTCCGGGGAGGGCCCACCCAAGATGGATCTCATGGCCTTTAG  2318

Query 1600  --------------------------------------------------------------------------  1599
                                                                                      
Sbjct 2319  CCCCAGCCTTTCACCTTGTCCTATTATGATGGGTAAGGCGGAGAATCAGGATTTAAATGAAGATCATGATGCCA  2392

Query 1600  --CCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTA  1671
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2393  AACCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTA  2466

Query 1672  GAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACC  1745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2467  GAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACC  2540

Query 1746  AGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACG  1819
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2541  AGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACG  2614

Query 1820  GACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATC  1893
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2615  GACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATC  2688

Query 1894  ATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGA  1967
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2689  ATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGA  2762

Query 1968  GACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTG  2041
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2763  GACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTG  2836

Query 2042  ACAACAGTGACCAG  2055
            ||||||||||||||
Sbjct 2837  ACAACAGTGACCAG  2850

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