Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_03707
Subject:
NM_031857.1
Aligned Length:
2915
Identities:
1735
Gaps:
925

Alignment

Query    1  ATGGTTTCC-----------AGATGTAGCTGCCTGGGGGTCCAGTGTCTGCTGCTCTCGCTTCTTCTCCTCGCA  63
            |||.|.|.|           ||||       ||.|.|||| |||..|||.||||||||||||||..||||||||
Sbjct    1  ATGTTATACTCAAGTCGAGGAGAT-------CCAGAGGGT-CAGCCTCTACTGCTCTCGCTTCTGATCCTCGCA  66

Query   64  GCCTGGGAGGTGGGGAGCGGCCAGCTCCACTACTCAGTCTACGAGGAGGCCAGACACGGCACCTTCGTGGGCCG  137
            ...||||.|||||||||||||||||||||||||||.|||...|||||.|||..|||||||||||||||||||||
Sbjct   67  ATGTGGGTGGTGGGGAGCGGCCAGCTCCACTACTCCGTCCCGGAGGAAGCCGAACACGGCACCTTCGTGGGCCG  140

Query  138  CATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAAGACACG  211
            |||||||||||||||||||||||||||||||||||||||||.|||||||||||.|.|||..||||||.|.|.||
Sbjct  141  CATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCAGTTGGATTCCAAAGGCCGCG  214

Query  212  GGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATTGACCGCGAGGAGCTGTGC  285
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct  215  GGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGC  288

Query  286  GGGCGGAGCGTGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGT  359
            ||||||||||.||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct  289  GGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTAGACAGGCCGCTGCAGGTTTTCCATGTGGACGT  362

Query  360  GGAAGTGAAGGACATTAACGACAACCCGCCCAG-GTTCTCCGTAACAGAACAAAAGCTCTCAATACCTGAATCC  432
            |||.||||||||||||||||||||||| .|||| ||||.|.|..|||.||.|.||.||.|..||..|.||||||
Sbjct  363  GGAGGTGAAGGACATTAACGACAACCC-TCCAGTGTTCCCAGCGACACAAAAGAATCTGTTCATCGCGGAATCC  435

Query  433  AGACTGCTTGACTCTCGATTTCCACTAGAAGGCGCATCTGATGCGGATGTTGGAGAGAACGCATTGCTTACTTA  506
            ||.|.||||||||||||.|||||||||||.|||||.||.|||||.|||.|.||.||||||||..||||.|||||
Sbjct  436  AGGCCGCTTGACTCTCGGTTTCCACTAGAGGGCGCGTCCGATGCAGATATCGGGGAGAACGCCCTGCTCACTTA  509

Query  507  CAAACTCAGTCCAAATGAGTATTTTGTTCTTGATATTATAAACAAAAAAGACAA--AGACAAATTCCCAG----  574
            ||.|||.||.||.|||||||||||..|.||.||..|             |.|||  || |||    ||||    
Sbjct  510  CAGACTGAGCCCCAATGAGTATTTCTTCCTGGACGT-------------GCCAACCAG-CAA----CCAGCAGG  565

Query  575  ----------TG--CTTGTTCTGCGGAAGCTGCTGGATCGTGAAGAAAATCCTCAGCTAAAGTTGTTGTTGACA  636
                      ||  |||||..|.|||||.||..|.||..|.|||||||.|||..||||..|.||.|||.|.||.
Sbjct  566  TAAAACCTCTTGGACTTGTATTACGGAAACTTTTAGACAGAGAAGAAACTCCGGAGCTTCATTTATTGCTCACG  639

Query  637  GCAACTGATGGAGGCAAACCTGAATTTACCGGATCTGTTTCTCTGCTGATCCTGGTGTTAGATGCCAATGATAA  710
            ||.||.||||||||||||||.||..|.||.||..|.|||....|.||.|||..|||..|.||...||||||.||
Sbjct  640  GCCACCGATGGAGGCAAACCCGAGCTGACTGGCACCGTTCAATTACTCATCACGGTACTGGACAACAATGACAA  713

Query  711  CGCCCCTATCTTTGACAGA--CCGGTTTA---TGAAGTTAAGATGTATGAAAA----TCAAGTGAACCAAACAT  775
            .|||||..|.||.||||||  ||.||.||   ||||.|||..|     |||||    ||    .|.|..|||..
Sbjct  714  TGCCCCAGTGTTCGACAGAACCCTGTATACGGTGAAATTACCA-----GAAAACGTTTC----TATCGGAACGC  778

Query  776  TAGTAATACGGCTCAACGCTTCTGATTCGGATGAAGGAATAAACAAGGAAATGATGTATTCATTTAGCTC----  845
            |.||.||.|..|.|||.||.||.||||..||.|||||..|.||...|||.||.||.||.||.||   |||    
Sbjct  779  TGGTGATTCACCCCAATGCCTCAGATTTAGACGAAGGCTTGAATGGGGATATTATTTACTCCTT---CTCCAGT  849

Query  846  ----TTTGGTC-CCACCCACGATA-AGAAGGAAATTT-----TGGA-----TAAACGAAAGGACG-GGAGAAAT  902
                ||   || |||     |||| |.||...||.||     ||||     |||          | ||.|.|||
Sbjct  850  GATGTT---TCTCCA-----GATATAAAATCCAAGTTCCACATGGACCCCTTAA----------GTGGGGCAAT  905

Query  903  AAAAGT-AAATGATGC-TATTGACTTTGAGGACAGTA----ACACTTATGAA-ATTCATGTAGATGTTACAGAT  969
            .|.||| |.|.||  | |||.||.|||||.||.||||    ||||     || ||.|..||.||.|.|...|||
Sbjct  906  CACAGTGATAGGA--CATATGGATTTTGAAGAAAGTAGAGCACAC-----AAGATCCCAGTCGAGGCTGTCGAT  972

Query  970  AAGGGAAACCCACCTATGGTTGGTCACTGCACGGTCCTAGTGGAACTACTGGATGAAAATGATAATTCACCTGA  1043
            ||.||...||||||..|||.||||||.||.||..|.||.||||||.|..||||||.||||||.|||.|.||..|
Sbjct  973  AAAGGCTTCCCACCCCTGGCTGGTCATTGTACACTTCTTGTGGAAGTTGTGGATGTAAATGACAATGCTCCACA  1046

Query 1044  GGTGATTGTCACTTCTCTGTCTCTCCCAGTGAAAGAAGATGCTCAAGTGGGCACCGTCATTGCCCTAATCAGCG  1117
            |.|||.|.|||...|.||.||..|.||.||.|||||.||.||.|||.||||.||.||.||||||||.||.||.|
Sbjct 1047  GTTGACTATCAAAACGCTCTCGGTTCCTGTAAAAGAGGACGCACAACTGGGGACAGTTATTGCCCTGATTAGTG  1120

Query 1118  T-TTCTGACCATGATTCAGGAGCCAACGGACAGGTCACCTGCTCTCTGACGCCTCACGTTCCGTTCAAGCTGGT  1190
            | .|| ||||..||..|||..||||||||.|||||.||||||||.||||||||.|||||.||.|||||||||||
Sbjct 1121  TGATC-GACCTAGACGCAGATGCCAACGGGCAGGTTACCTGCTCCCTGACGCCCCACGTCCCCTTCAAGCTGGT  1193

Query 1191  GTCCACCTACAAGAATTACTACTCATTGGTGCTGGACAGCGCTCTGGACCGCGAGAGGGTGTCGGCCTATGAGC  1264
            ||||||||||||||||||||||||.||||||||||||||.|||||||||||||||||.|||||.|||||.||||
Sbjct 1194  GTCCACCTACAAGAATTACTACTCGTTGGTGCTGGACAGAGCTCTGGACCGCGAGAGTGTGTCCGCCTACGAGC  1267

Query 1265  TGGTGGTGACCGCGCGGGACGGGGGCTCGCCTCCGCTGTGGGCCACGGCCAGCGTGTCTGTGGAGGTGGCCGAC  1338
            |||||||.||||||||||||||||||||||||.|.|||||||||||||||||.|||||||||||||||||||||
Sbjct 1268  TGGTGGTTACCGCGCGGGACGGGGGCTCGCCTTCACTGTGGGCCACGGCCAGGGTGTCTGTGGAGGTGGCCGAC  1341

Query 1339  GTGAACGACAACGCGCCTGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCAGGCTG  1412
            ||||||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1342  GTGAACGACAACGCACCAGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCGGGCTG  1415

Query 1413  CCACATCTTCACGGTGTCTGCGTGGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCTCTGGTGGAGC  1486
            ||||||||||||||||||||||.|||||||.||||||||||||||||||||||||||||||||.||||||||||
Sbjct 1416  CCACATCTTCACGGTGTCTGCGCGGGACGCTGACGCGCAGGAGAACGCCCTGGTGTCCTACTCGCTGGTGGAGC  1489

Query 1487  GGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAG  1560
            |||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 1490  GGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCAGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAG  1563

Query 1561  CCGCTGGACCACGAGGAGCTGGAGCTGCTACAGTTCC-------------------------------------  1597
            |||.|||||||||||||||||||||||||||||||||                                     
Sbjct 1564  CCGTTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCTCTGGG  1637

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 1638  CAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAATGCGCCGGCGCTGCTGACACCTCGGATGA  1711

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 1712  GGGGCACTGACGGCGCAGTGAGCGAGATGGTGCTGCGGTCGGTGGGCGCCGGCGTAGTGGTGGGGAAGGTGCGC  1785

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 1786  GCAGTGGACGCCGACTCGGGCTACAACGCGTGGCTTTCATACGAGCTGCAGCCAGAAACGGCCAGCGCGAGCAT  1859

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 1860  CCCGTTCCGCGTGGGGCTGTACACGGGCGAGATCAGCACAACGCGTGCCCTGGACGAAACGGACGCACCGCGCC  1933

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 1934  AGCGCCTACTGGTGCTGGTGAAAGACCACGGGGAGCCAGCGCTGACGGCCACGGCCACTGTGCTGGTGTCGCTG  2007

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 2008  GTGGAGAGCGGCCAGGCGCCAAAGTCATCGTCGCGGGCGTCAGTGGGTGCCACGGGCCCCGAGGTGACGCTGGT  2081

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 2082  GGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTGTCTAGCCTGTTGGTTCTCACGCTGCTGCTGTACA  2155

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 2156  CTGTGCTGCGGTGCTCGGCGATGCCCACCGAGGGCGAGTGCGCGCCTGGCAAGCCGACGCTGGTGTGTTCTAGC  2229

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 2230  GCGGTGGGGAGTTGGTCGTACTCGCAGCAGAGGAGGCAGAGGGTGTGCTCTGGCGAGGGTAAGCAGAAGACCGA  2303

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 2304  CCTCATGGCCTTCAGCCCGGGCCTTTCTCCTTGTGCTGGATCTACAGAGCGAACGGGAGAACCCTCTGCTTCCT  2377

Query 1598  ---------------AGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCAC  1656
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2378  CAGATTCAACTGGGAAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCAC  2451

Query 1657  AGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGT  1730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2452  AGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGT  2525

Query 1731  ATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCT  1804
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2526  ATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCT  2599

Query 1805  GGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCA  1878
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2600  GGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCA  2673

Query 1879  GGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTT  1952
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2674  GGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTT  2747

Query 1953  CGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAG  2026
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2748  CGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAG  2821

Query 2027  GGAACAGCACGACTGACAACAGTGACCAG  2055
            |||||||||||||||||||||||||||||
Sbjct 2822  GGAACAGCACGACTGACAACAGTGACCAG  2850

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