Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_03781
Subject:
NR_144379.1
Aligned Length:
3861
Identities:
1549
Gaps:
2312

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGTGTGGAAAAAGTATGTCGGCAAGTCAGCTGGTTTCCCAGTGCAGGACGCGCTGACAGCTCGAGTGAGCGGAC  74

Query    1  ---------------------------------------------------ATGAAGAAAAACAGAGAAAGATT  23
                                                               |||||||||||||||||||||||
Sbjct   75  TGCCCAGGACTTCGGAACTAGACGAGTTCTGTAGAAATCCTGTCAAAGAATATGAAGAAAAACAGAGAAAGATT  148

Query   24  CTGCAATAGAGAGAGAGAATTTGTATATAAATTTAAAGTAGGAAGTCAGTGCTTAGAACTGAGAGTGCCACTCA  97
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CTGCAATAGAGAGAGAGAATTTGTATATAAATTTAAAGTAGGAAGTCAGTGCTTAGAACTGAGAGTGCCACTCA  222

Query   98  AATTTCCTGTTCAAGAGAATGCCAGTCATTTGCATGGACGTCTGATGCTGCTGCACAGTTTACCGTGCTTTATA  171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AATTTCCTGTTCAAGAGAATGCCAGTCATTTGCATGGACGTCTGATGCTGCTGCACAGTTTACCGTGCTTTATA  296

Query  172  GAAAAAGACTTAAAAGAAGCTCTGACTCAGTTTATAGAAGAAGAATCCCTCAGCGATTATGATAGAGATGCTGA  245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GAAAAAGACTTAAAAGAAGCTCTGACTCAGTTTATAGAAGAAGAATCCCTCAGCGATTATGATAGAGATGCTGA  370

Query  246  AGCATCCCTGGCAGCTGTGAAATCAGGTGAAGTAGATTTACATCAGCTGGCGAGTACATGGGCCAAAGCTTATG  319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGCATCCCTGGCAGCTGTGAAATCAGGTGAAGTAGATTTACATCAGCTGGCGAGTACATGGGCCAAAGCTTATG  444

Query  320  CTGAGACCACGTTAGAGCATGCAAGGCCTGAAGAACCCAGCTGGGATGAAGATTTTGCAGATGTGTACCATGAC  393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CTGAGACCACGTTAGAGCATGCAAGGCCTGAAGAACCCAGCTGGGATGAAGATTTTGCAGATGTGTACCATGAC  518

Query  394  TTAATTCATTCTCCTGCCTCTGAAACTCTCTTAAATTTGGAACATAATTACTTTGTTAGTATCTCAGAACTGAT  467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TTAATTCATTCTCCTGCCTCTGAAACTCTCTTAAATTTGGAACATAATTACTTTGTTAGTATCTCAGAACTGAT  592

Query  468  TGGTGAAAGAGATGTGGAGCTGAAAAAATTACGAGAGAGACAAGGTATTGAAATGGAAAAAGTCATGCAGGAAT  541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TGGTGAAAGAGATGTGGAGCTGAAAAAATTACGAGAGAGACAAGGTATTGAAATGGAAAAAGTCATGCAGGAAT  666

Query  542  TGGGAAAATCACTGACAGATCAAGATGTAAATTCACTGGCTGCTCAGCATTTTGAATCCCAGCAAGACCTAGAA  615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TGGGAAAATCACTGACAGATCAAGATGTAAATTCACTGGCTGCTCAGCATTTTGAATCCCAGCAAGACCTAGAA  740

Query  616  AATAAATGGTCGAATGAATTAAAACAATCAACTGCCATCCAAAAACAAGAGTATCAAGAATGGGTAATAAAACT  689
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AATAAATGGTCGAATGAATTAAAACAATCAACTGCCATCCAAAAACAAGAGTATCAAGAATGGGTAATAAAACT  814

Query  690  TCACCAAGACCTAAAAAACCCCAACAACAGCTCCCTTAGTGAGGAAATTAAAGTTCAGCCAAGTCAGTTCAGAG  763
            ||||||||||||||||||||||||||||||||||                                        
Sbjct  815  TCACCAAGACCTAAAAAACCCCAACAACAGCTCC----------------------------------------  848

Query  764  AATCTGTAGAAGCAATTGGAAGGATTTATGAGGAACAGAGAAAGTTAGAAGAAAGTTTTACCATTCACTTAGGA  837
                                                                               |||||||
Sbjct  849  -------------------------------------------------------------------CTTAGGA  855

Query  838  GCCCAGTTGAAGACCATGCATAATTTGAGATTGCTGAGAGCAGATATGCTGGACTTCTGTAAGCATAAAAGAAA  911
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  856  GCCCAGTTGAAGACCATGCATAATTTGAGATTGCTGAGAGCAGATATGCTGGACTTCTGTAAGCATAAAAGAAA  929

Query  912  TCATCGAAGTGGTGTGAAACTTCATCGGCTCCAAACAGCTCTGTCACTTTATTCTACATCTCTCTGTGGCCTGG  985
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  930  TCATCGAAGTGGTGTGAAACTTCATCGGCTCCAAACAGCTCTGTCACTTTATTCTACATCTCTCTGTGGCCTGG  1003

Query  986  TTTTACTAGTAGATAATCGAATTAATTCATATAGTGGTATTAAAAGAGATTTTGCCACAGTTTGCCAAGAATGC  1059
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004  TTTTACTAGTAGATAATCGAATTAATTCATATAGTGGTATTAAAAGAGATTTTGCCACAGTTTGCCAAGAATGC  1077

Query 1060  ACTGACTTCCATTTCCCCCGAATTGAAGAGCAATTAGAAGTTGTCCAACAGGTGGTACTTTATGCTAGAACCCA  1133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078  ACTGACTTCCATTTCCCCCGAATTGAAGAGCAATTAGAAGTTGTCCAACAGGTGGTACTTTATGCTAGAACCCA  1151

Query 1134  GCGCAGGAGTAAATTGAAAGAATCACTTGATTCTGGAAACCAAAATGGAGGAAATGATGATAAGACTAAGAATG  1207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152  GCGCAGGAGTAAATTGAAAGAATCACTTGATTCTGGAAACCAAAATGGAGGAAATGATGATAAGACTAAGAATG  1225

Query 1208  CTGAGAGGAACTATTTAAATGTTTTACCTGGGGAATTTTATATTACACGGCATTCTAATCTCTCAGAAATCCAT  1281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226  CTGAGAGGAACTATTTAAATGTTTTACCTGGGGAATTTTATATTACACGGCATTCTAATCTCTCAGAAATCCAT  1299

Query 1282  GTTGCTTTCCATCTCTGTGTGGATGACCATGTGAAATCGGGAAACATCACTGCTCGTGATCCTGCCATTATGGG  1355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300  GTTGCTTTCCATCTCTGTGTGGATGACCATGTGAAATCGGGAAACATCACTGCTCGTGATCCTGCCATTATGGG  1373

Query 1356  ACTCCGAAATATACTCAAAGTTTGCTGTACCCATGACATCACAACAATAAGCATTCCTCTCTTGCTGGTACATG  1429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374  ACTCCGAAATATACTCAAAGTTTGCTGTACCCATGACATCACAACAATAAGCATTCCTCTCTTGCTGGTACATG  1447

Query 1430  ATATGTCAGAGGAAATGACTATACCCTGGTGCTTAAGGAGAGCGGAACTTGTGTTCAAGTGTGTCAAAGGTTTC  1503
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448  ATATGTCAGAGGAAATGACTATACCCTGGTGCTTAAGGAGAGCGGAACTTGTGTTCAAGTGTGTCAAAGGTTTC  1521

Query 1504  ATGATGGAAATGGCTTCATGGGATGGAGGAATTTCTAGGACAGTGCAATTTCTAGTACCACAGAGTATTTCTGA  1577
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1522  ATGATGGAAATGGCTTCATGGGATGGAGGAATTTCTAGGACAGTGCAATTTCTAGTACCACAGAGTATTTCTGA  1595

Query 1578  AGAAATGTTTTATCAACTTAGTAACATGCTTCCCCAGATCTTCCGAGTATCATCAACACTCACTCTGACATCCA  1651
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1596  AGAAATGTTTTATCAACTTAGTAACATGCTTCCCCAGATCTTCCGAGTATCATCAACACTCACTCTGACATCCA  1669

Query 1652  AGCAC---------------------------------------------------------------------  1656
            |||||                                                                     
Sbjct 1670  AGCACTAAACCCTTATAGATTGACATGCTGGCAGAAGATGATTGTTAAACTCTCCAGGAACTTGTGCTATGCTG  1743

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 1744  GGAATCTGTCAAGCAAAAGATGCCCAGAAAGAGAACTTGCAGCTCAATCCACAAATCAAGATACATGTGTGTGA  1817

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 1818  AACCATTCCAAAAATTTATATACTGCACAAACTGGTGATCAACCCCTAACTTAAACACTTAAAGTCTCTTTATG  1891

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 1892  AATTTCTCTTTTTTTCTTCTCTGTGTTACCTGTGAATATTAGTAATCTAAAACTTTTTATTTATCACACATGGA  1965

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 1966  CACTTGGGAAAGGAAACTTGATTATATTTACATGGAGGCATTTGACTTTTTCAAGAGGCTTGACTCGTCTCAGG  2039

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 2040  TGCAATCCTTAATTAAACATACAAACAAAATTTTCCTTTTACTTTCTTTGCCAAAACAAAATGTAAAAGCACTG  2113

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 2114  AAATATACATTGCAAGTACAAATTTCCTGTGAAAATCTTTTTATAGAAACACAAATGTATAAGACAAATGTGCT  2187

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 2188  TGTTCTTTTAAATTCTCCTGTTTCAGAATCTCTTTTTAATCTACTCCTAAGGATGTACAAGTTAGAGTCAGAAG  2261

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 2262  ACGTTTTGGATTTTTTCCCTCTCTCTCATCCTCCCGCTGTGCCCTTGCACTTGCATATTAATAACATTTCATGG  2335

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 2336  ACTGGGAAATAGTGTTCTTTTTTGCAAGCTTGATGTCAAGTTAGTCTAAACCAGCACCTGGCAGTATTTTAGTG  2409

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 2410  CTCATCAACATTGTGACAATCACACAAGGAAGATCATTTCTACATTTCTGTCCTCCCTGCGTTCTCAGCTTGCT  2483

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 2484  TAACCATTCCTCTACCTCTTGCATTTTTTTGCGGATAAATGTATCCCCATTTCTGCTTCTCTGTTTCCCCTCCT  2557

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 2558  TTTCCATTGTTTTTCCTTATGGTACTACTTTCTCAGGTGCTACATATCATATATTTGTCCCATCTATAACATAT  2631

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 2632  TTAAATGCTATAAGTAGTAACTCCATTAAACAAAGGCATTTACAAAAGCACACAGGTGTTTAGAAAAGCAATAG  2705

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 2706  TTTCATCAATTCCAAGTTATGTGGATATTGTAACTGGCCACAAGAATGAAATGGAGGGCATTTGGTGTCATAAG  2779

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 2780  ATGGCATGTCTTGATGACAAGAAACAAAACGCCCTTCATTAATATGCCTCAGTGTAATAACTATTATAGAAACT  2853

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 2854  GTTGGCAAGCAGAGTGCTTTCCTATAACAGAATGTGTCTTAATTTTCTACTCGAGGGAAAGGTTTGTCCAGGTA  2927

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 2928  ACAACACTAAAGACAACCCTAAGAACACCCACTCCAGCAGTATGTCCATTAGACACTAAAACTCTCCAAATTAT  3001

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 3002  TTGTCAGGGAGCCTGGCGATTCTGCCAAGAAGGCAGGTGTTTTGCCCTTAGAGCCTATACAGTTCTCTTGGAGA  3075

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 3076  AATTGTCTTTCAGGCACCACTGTTAATCACTGAGACTGATTCTAATGCAAAGCAGGGAAGACAGAGGCAGAAAC  3149

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 3150  CAGGAGAGTGGTAGATCAGTGCAGCCCAGATATCGGAATGGAGGAGCAAAGTTTCATTCACGGATGTTTGTTGA  3223

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 3224  ATGCTGCTGCCCAACTCTTCCTTTGTCACCTCTAGGCTATTCCACTAAGTTACTTATAAACTGGTGGCTTTAAC  3297

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 3298  TGAGGGCTGTGTAAAGGTACTATTTGGCATGTGAAGTCAGGATAAATTTATCGAATGTCCGTTTTCCACATGCA  3371

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 3372  ACTGTGTTACAGAAGTAGTAAAATTGGAAGAATCATGTTTATGGTGTTACCACTGATGGAAACACACAAACACC  3445

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 3446  AAGCTAATAATAAATATATAACTTAAAAAGCTAATTATATGCACTGAAATGGTGGGAATTTTAGTGATGCAGTA  3519

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 3520  ATTGAGGAGTCTGGAGTTTTGTATTTGGACCAAGAATTATGAGATGAGGATCTTTTTCTGAGTGTTCTAAAGGG  3593

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 3594  CTTCTTGAGGGGGAGTGGTTTAAAGCACTTCATGAATGATGTGAAGAAGGTACCTTGGGCTGAGACAGCATTCT  3667

Query 1657  --------------------------------------------------------------------------  1656
                                                                                      
Sbjct 3668  AGGTACAGATGGCACTCTGTTCAACCAACTGTGGATGGAAAATATTCTGAAAAAAAATACAATAAAAATTTTAA  3741

Query 1657  -------------  1656
                         
Sbjct 3742  AAATACAATATAA  3754

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