Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_03802
• Subject: NM_005721.5
• Aligned Length: 1261
• Identities: 815
• Gaps: 224

Alignment

Query    1  ATGGCAGGCTCCCTGCCTCCCTGCGTGGTGGACTGTGGCACCGGGTATACCAAGCTTGGCTACGCAGGCAACAC  74
            |||||.||....|||||..||||.|||||||||||||||||.||||||||.||.||.||.||.||.||.||.||
Sbjct    1  ATGGCGGGACGGCTGCCGGCCTGTGTGGTGGACTGTGGCACGGGGTATACAAAACTAGGATATGCTGGAAATAC  74

Query   75  TGAGCCCCAGTTCATTATTCCTTCATGTATTGCCATCAGAGAGTCAGCAAAGGTAGTTGACCAAGCTCAAAGGA  148
            .||.||.|||||.||.||.|||||.||||||||.||.|..|||||||||||.||.|.|||.|||||||||||||
Sbjct   75  AGAACCACAGTTTATCATCCCTTCCTGTATTGCTATTAAGGAGTCAGCAAAAGTGGGTGATCAAGCTCAAAGGA  148

Query  149  GAGTGTTGAGGGGAGTTGATGACCTTGACTTTTTCATAGGAGATGAAGCCATCGATAAACCTACATATGCTACA  222
            |.|||.|||..||.|||||||||||.|||||.|||||.||.||||||||.||.||.||||||||||||||.|||
Sbjct  149  GGGTGATGAAAGGTGTTGATGACCTAGACTTCTTCATTGGTGATGAAGCAATAGAAAAACCTACATATGCAACA  222

Query  223  AAGTGGCCGATACGACATGGAATCATTGAAGACTGGGATCTT-ATGGAAAGGTTCATGGAGCAAGTGGTTTTTA  295
            ||||||||.||.||.|||||.||..|||||||.||||| ||| |||||||||||.||||||||||||.|.||||
Sbjct  223  AAGTGGCCAATCCGCCATGGTATAGTTGAAGATTGGGA-CTTAATGGAAAGGTTTATGGAGCAAGTGATCTTTA  295

Query  296  AATATCTTCGAGCTGAACCTGAGGACCATTATTTTTTAATGACAGAACCTCCACTCAATACACCAGAAAACAGA  369
            |||||.|..|.||.||||||||.||||||||||||.|..||||.|||||||||.|.|||||.|||||||||||.
Sbjct  296  AATATTTAAGGGCAGAACCTGAAGACCATTATTTTCTTTTGACTGAACCTCCATTGAATACTCCAGAAAACAGG  369

Query  370  GAGTATCTTGCAGAAATTATGTTTGAATCATTTAACGTACCAGGACTCTACATTGCAGTTCAGGCAGTGCTGGC  443
            ||.|||..|||.|||||.||||||||.||.||.||.||.|||||..|.||||||||.||.|||||.||.||.||
Sbjct  370  GAATATACTGCTGAAATAATGTTTGAGTCCTTCAATGTTCCAGGCTTGTACATTGCTGTGCAGGCTGTTCTTGC  443

Query  444  CTTGGCGGCATCTTGGACATCTCGACAAGTGGGTGAACGTACGTTAACGGGGATAGTCATTGACAGCGGAGATG  517
            |||.||.|||||||||||.||..|||||||.||.|||||.|||||.||.||.|..||.||.|||||.|||||||
Sbjct  444  CTTAGCTGCATCTTGGACCTCAAGACAAGTAGGAGAACGGACGTTGACCGGTACGGTAATAGACAGTGGAGATG  517

Query  518  GAGTCACCCATGTTATCCCAGTGGCAGAAGGTTATGTAATTGGAAGCTGCATCAAACACATCCCGATTGCAGGT  591
            |.|||||.|||||.||.||.|||||.|||||.|||||.|||||.|||||.||.||||||||.||.||.|||||.
Sbjct  518  GTGTCACTCATGTCATTCCTGTGGCTGAAGGGTATGTGATTGGCAGCTGTATTAAACACATTCCAATCGCAGGA  591

Query  592  AGAGATATTACGTATTTCATTCAACAGCTGCTAAGGGAGAGGGAGGTGGGAATCCCTCCTGAGCAGTCACTGGA  665
            .|||||||.||.|||||.|||||.||.|||||.||.||..|.||.||.|||||||||||.||.||.||..||||
Sbjct  592  CGAGATATAACATATTTTATTCAGCAACTGCTGAGAGACCGAGAAGTAGGAATCCCTCCAGAACAATCCTTGGA  665

Query  666  GACCGCAAAAGCCATTAAGGAGAAATACTGTTACATTTGCCCCGATATAGTCAAGGAATTTGCCAAGTATGAT-  738
            .||.||.||.||..|.||||||...||..||||..|.|||||.|||.||||.||.||||||..|||||||||| 
Sbjct  666  AACTGCTAAGGCAGTAAAGGAGCGCTATAGTTATGTCTGCCCAGATTTAGTAAAAGAATTTAACAAGTATGATA  739

Query  739  ---GTGGATCCCCGGAAGTGGATCAAACAGTACACGGGTATCAATGCGA--TCAACCAGAAGAAGTTTGTTATA  807
               .|||.||    .||.|||||.||||||||.||.||.||||||||.|  ||||  ||||..|||||..|||.
Sbjct  740  CAGATGGGTC----AAAATGGATTAAACAGTATACTGGAATCAATGCTATCTCAA--AGAAAGAGTTTTCTATC  807

Query  808  GACGTTGGTTACGAAAGATTCCTGGGACCTGAAATATTCTTTCACCCGGAGTTTGCCAACCCAGACTTTATGGA  881
            ||.||||||||.||.|||||..|||||||||||||.||.|||||.||.||||||||.||.||||||||||...|
Sbjct  808  GATGTTGGTTATGAGAGATTTTTGGGACCTGAAATCTTTTTTCATCCAGAGTTTGCTAATCCAGACTTTACACA  881

Query  882  GTCCATCTCAGATGTTGTTGATGAAGTAATACAGAACTGCCCCATCGATGTGCGGCGCCCGCTGTATAA-----  950
            ..|.||||||||.|||||.|||||||||||.|||||.||.||.||.|||||..|.||.||.||.||.||     
Sbjct  882  ACCTATCTCAGAAGTTGTAGATGAAGTAATTCAGAATTGTCCTATTGATGTCAGACGTCCTCTCTACAAGAATA  955

Query  951  --------------------------------------------------------------------------  950
                                                                                      
Sbjct  956  TTGTCCTCTCTGGAGGTTCAACCATGTTCAGGGACTTTGGACGTCGCTTGCAAAGAGATTTGAAAAGAACTGTA  1029

Query  951  --------------------------------------------------------------------------  950
                                                                                      
Sbjct 1030  GATGCCCGGCTGAAATTAAGTGAGGAATTGAGTGGTGGTAGATTGAAGCCAAAACCTATTGATGTACAAGTCAT  1103

Query  951  ---------------------------------------------------------GCCCGAGTTCTTTCAGG  967
                                                                     |||.|||||||..||.|
Sbjct 1104  TACACACCACATGCAGCGATATGCAGTTTGGTTTGGAGGATCAATGCTGGCTTCCACGCCTGAGTTCTACCAAG  1177

Query  968  TCTGCCACACCAAGAAGGACTATGAAGAGTACGGGCCCAGCATCTGCCGCCACAACCCCGTCTTTGGAGTCATG  1041
            |.|||||||||||.|||||.||||||||....||.||.|||||.||.||.|||||.||.||.||||||||||||
Sbjct 1178  TATGCCACACCAAAAAGGATTATGAAGAAATTGGACCTAGCATTTGTCGTCACAATCCAGTGTTTGGAGTCATG  1251

Query 1042  TCC  1044
            ||.
Sbjct 1252  TCG  1254